Wall clock time and date at job start Tue Mar 31 2020 12:49:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.47891 * 110.99849 * 2 1
4 4 C 1.53998 * 107.05593 * 145.84544 * 3 2 1
5 5 C 1.54594 * 105.13872 * 358.77402 * 4 3 2
6 6 O 1.42898 * 110.72120 * 96.58276 * 5 4 3
7 7 C 1.53006 * 110.72095 * 219.68394 * 5 4 3
8 8 N 1.46499 * 109.46822 * 179.97438 * 7 5 4
9 9 C 1.34774 * 120.00269 * 179.97438 * 8 7 5
10 10 O 1.21285 * 119.99739 * 0.02562 * 9 8 7
11 11 C 1.50698 * 120.00465 * 180.02562 * 9 8 7
12 12 H 1.09002 * 109.46843 * 60.00844 * 11 9 8
13 13 C 1.50699 * 109.46999 * 300.00634 * 11 9 8
14 14 H 1.07997 * 120.00181 * 335.01629 * 13 11 9
15 15 C 1.37878 * 119.99877 * 155.01906 * 13 11 9
16 16 N 1.31517 * 120.00004 * 355.28356 * 15 13 11
17 17 Si 1.86796 * 120.00011 * 175.28161 * 15 13 11
18 18 H 1.48497 * 109.46908 * 90.00339 * 17 15 13
19 19 H 1.48491 * 109.47146 * 330.00148 * 17 15 13
20 20 H 1.48501 * 109.46992 * 210.00016 * 17 15 13
21 21 C 1.50700 * 109.47241 * 180.02562 * 11 9 8
22 22 C 1.38237 * 119.99871 * 66.35810 * 21 11 9
23 23 C 1.38230 * 119.99867 * 179.80901 * 22 21 11
24 24 C 1.38230 * 120.00192 * 0.41707 * 23 22 21
25 25 C 1.38239 * 119.99979 * 359.81493 * 24 23 22
26 26 C 1.38232 * 120.00161 * 246.63225 * 21 11 9
27 27 C 1.48529 * 110.99724 * 117.40145 * 2 1 3
28 28 H 1.08998 * 109.47334 * 59.87376 * 1 2 3
29 29 H 1.09009 * 109.47358 * 179.87025 * 1 2 3
30 30 H 1.09001 * 109.47477 * 299.87457 * 1 2 3
31 31 H 1.09004 * 109.92245 * 26.49188 * 3 2 1
32 32 H 1.08998 * 109.92250 * 265.19609 * 3 2 1
33 33 H 1.09006 * 110.30871 * 239.85662 * 4 3 2
34 34 H 1.09005 * 110.39249 * 117.73783 * 4 3 2
35 35 H 0.96704 * 113.99788 * 182.44691 * 6 5 4
36 36 H 1.08996 * 109.47185 * 60.00264 * 7 5 4
37 37 H 1.08996 * 109.47077 * 300.00284 * 7 5 4
38 38 H 0.97005 * 119.99694 * 0.02562 * 8 7 5
39 39 H 0.97009 * 119.99822 * 5.56476 * 16 15 13
40 40 H 1.08005 * 119.99932 * 0.02562 * 22 21 11
41 41 H 1.08003 * 120.00037 * 180.20940 * 23 22 21
42 42 H 1.08001 * 120.00144 * 179.78830 * 24 23 22
43 43 H 1.07997 * 119.99773 * 179.97438 * 25 24 23
44 44 H 1.07997 * 120.00329 * 359.97438 * 26 21 11
45 45 H 1.09001 * 110.67275 * 81.84337 * 27 2 1
46 46 H 1.09005 * 110.66712 * 318.70591 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9990 1.3807 0.0000
4 6 3.2982 1.3658 0.8266
5 6 3.4491 -0.0930 1.3154
6 8 4.3208 -0.8275 0.4535
7 6 3.9588 -0.1308 2.7575
8 7 4.0909 -1.5235 3.1924
9 6 4.5274 -1.8025 4.4366
10 8 4.8104 -0.9005 5.1964
11 6 4.6639 -3.2352 4.8837
12 1 5.3704 -3.7526 4.2347
13 6 3.3212 -3.9151 4.8079
14 1 2.4154 -3.3303 4.8708
15 6 3.2490 -5.2838 4.6582
16 7 4.3483 -5.9856 4.4885
17 14 1.5900 -6.1414 4.6964
18 1 1.0371 -6.2111 3.3200
19 1 0.6586 -5.3791 5.5660
20 1 1.7556 -7.5160 5.2335
21 6 5.1658 -3.2724 6.3042
22 6 4.3727 -2.7939 7.3303
23 6 4.8315 -2.8317 8.6337
24 6 6.0869 -3.3400 8.9100
25 6 6.8820 -3.8141 7.8834
26 6 6.4216 -3.7798 6.5804
27 6 2.0012 -0.6382 1.2311
28 1 -0.3634 0.5158 -0.8888
29 1 -0.3634 -1.0277 -0.0023
30 1 -0.3634 0.5119 0.8911
31 1 1.2758 2.0561 0.4571
32 1 2.2122 1.6967 -1.0212
33 1 3.2136 2.0429 1.6767
34 1 4.1478 1.6460 0.2038
35 1 4.4196 -1.7587 0.6949
36 1 3.2521 0.3865 3.4063
37 1 4.9299 0.3612 2.8126
38 1 3.8649 -2.2449 2.5845
39 1 5.2143 -5.5527 4.5492
40 1 3.3931 -2.3938 7.1140
41 1 4.2105 -2.4610 9.4358
42 1 6.4467 -3.3664 9.9280
43 1 7.8630 -4.2109 8.0993
44 1 7.0429 -4.1500 5.7784
45 1 2.0040 -1.7236 1.1315
46 1 1.4237 -0.3323 2.1035
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001433890957.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:52
Heat of formation + Delta-G solvation = -60.981447 kcal
Electronic energy + Delta-G solvation = -27305.912733 eV
Core-core repulsion = 23580.922748 eV
Total energy + Delta-G solvation = -3724.989985 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.04145 -39.09206 -37.79827 -36.08172 -34.02964 -33.70820 -31.67072 -30.92037
-30.06865 -29.10563 -27.54963 -26.41897 -24.34390 -23.55442 -21.69443 -21.52898
-20.86946 -20.39704 -19.57228 -17.63992 -17.08770 -16.32642 -15.93058 -15.75007
-15.41059 -15.05295 -14.86691 -14.37880 -14.19562 -13.95309 -13.86794 -13.57089
-13.42403 -12.99597 -12.91866 -12.60188 -12.46097 -12.24736 -12.14471 -12.02952
-11.74770 -11.60882 -11.59202 -11.31614 -11.02628 -10.88837 -10.86428 -10.36360
-10.26523 -10.19685 -9.95271 -9.08333 -8.93222 -8.61884 -8.58377 -8.53557
-8.07118 -7.71723 -6.61327 -4.38803 2.23789 2.28449 3.28785 3.34835
3.49638 3.51857 3.71078 3.86064 4.04337 4.34207 4.42458 4.50573
4.71234 4.79307 4.98033 5.12531 5.20293 5.25778 5.29207 5.49334
5.53461 5.61981 5.63186 5.65821 5.68563 5.72015 5.77838 5.83372
5.90367 5.94806 6.03629 6.15070 6.35399 6.41714 6.57745 6.65089
6.82416 6.83406 6.91481 6.96022 7.24769 7.30678 7.52764 7.62662
7.77378 7.89542 8.10564 8.14901 8.55169 9.02428 9.33636 10.76468
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.012782 B = 0.004178 C = 0.003492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2190.065633 B = 6700.259509 C = 8017.104121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.515 5.515
3 C 0.038 3.962
4 C -0.117 4.117
5 C 0.123 3.877
6 O -0.541 6.541
7 C 0.103 3.897
8 N -0.730 5.730
9 C 0.535 3.465
10 O -0.561 6.561
11 C 0.043 3.957
12 H 0.066 0.934
13 C -0.594 4.594
14 H 0.057 0.943
15 C 0.034 3.966
16 N -0.893 5.893
17 Si 1.069 2.931
18 H -0.285 1.285
19 H -0.287 1.287
20 H -0.282 1.282
21 C -0.020 4.020
22 C -0.078 4.078
23 C -0.133 4.133
24 C -0.145 4.145
25 C -0.129 4.129
26 C -0.127 4.127
27 C 0.010 3.990
28 H 0.068 0.932
29 H 0.071 0.929
30 H 0.027 0.973
31 H 0.045 0.955
32 H 0.081 0.919
33 H 0.082 0.918
34 H 0.087 0.913
35 H 0.378 0.622
36 H 0.068 0.932
37 H 0.071 0.929
38 H 0.401 0.599
39 H 0.273 0.727
40 H 0.112 0.888
41 H 0.108 0.892
42 H 0.107 0.893
43 H 0.108 0.892
44 H 0.109 0.891
45 H 0.092 0.908
46 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.377 9.896 -5.266 11.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 N -0.239 5.239
3 C -0.090 4.090
4 C -0.155 4.155
5 C 0.081 3.919
6 O -0.347 6.347
7 C -0.022 4.022
8 N -0.384 5.384
9 C 0.325 3.675
10 O -0.440 6.440
11 C 0.022 3.978
12 H 0.083 0.917
13 C -0.631 4.631
14 H 0.075 0.925
15 C -0.174 4.174
16 N -0.527 5.527
17 Si 0.897 3.103
18 H -0.212 1.212
19 H -0.213 1.213
20 H -0.208 1.208
21 C -0.022 4.022
22 C -0.096 4.096
23 C -0.151 4.151
24 C -0.164 4.164
25 C -0.147 4.147
26 C -0.145 4.145
27 C -0.118 4.118
28 H 0.086 0.914
29 H 0.090 0.910
30 H 0.046 0.954
31 H 0.064 0.936
32 H 0.099 0.901
33 H 0.101 0.899
34 H 0.106 0.894
35 H 0.227 0.773
36 H 0.087 0.913
37 H 0.089 0.911
38 H 0.237 0.763
39 H 0.085 0.915
40 H 0.130 0.870
41 H 0.126 0.874
42 H 0.125 0.875
43 H 0.126 0.874
44 H 0.127 0.873
45 H 0.110 0.890
46 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -3.705 9.369 -5.680 11.566
hybrid contribution 0.163 0.974 1.032 1.429
sum -3.542 10.343 -4.648 11.879
Atomic orbital electron populations
1.22548 0.87835 1.02474 1.00573 1.64719 1.07966 1.14618 1.36562
1.22868 0.95310 0.90097 1.00736 1.22393 0.98735 0.93977 1.00406
1.22218 0.88585 0.92787 0.88354 1.86537 1.67052 1.26172 1.54948
1.21832 1.01743 0.85287 0.93379 1.45842 1.69713 1.06819 1.16038
1.21296 0.73684 0.92482 0.80059 1.90599 1.50701 1.49192 1.53469
1.18158 0.99849 0.89166 0.90634 0.91654 1.21567 0.89811 0.94361
1.57407 0.92460 1.25833 1.04638 0.94379 0.92530 1.70780 0.98815
1.39978 1.43122 0.83525 0.73806 0.76145 0.76863 1.21172 1.21276
1.20791 1.20091 0.91814 0.93476 0.96771 1.20791 0.99189 0.97866
0.91796 1.20989 0.96217 1.01367 0.96535 1.20833 0.95282 1.02110
0.98125 1.20894 0.99244 1.01327 0.93226 1.20977 0.95926 1.01400
0.96223 1.23956 0.95147 1.01096 0.91625 0.91359 0.91025 0.95397
0.93635 0.90087 0.89895 0.89402 0.77318 0.91342 0.91119 0.76347
0.91518 0.87017 0.87388 0.87479 0.87353 0.87275 0.89001 0.92423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.14 9.40 60.06 0.56 0.71 16
2 N -0.52 -6.12 5.55 -238.72 -1.33 -7.44 16
3 C 0.04 0.39 6.70 -2.76 -0.02 0.37 16
4 C -0.12 -1.26 6.27 -25.37 -0.16 -1.42 16
5 C 0.12 1.54 1.03 -88.76 -0.09 1.45 16
6 O -0.54 -7.30 13.11 -35.23 -0.46 -7.76 16
7 C 0.10 1.51 4.74 -4.04 -0.02 1.49 16
8 N -0.73 -12.49 5.10 -60.29 -0.31 -12.80 16
9 C 0.54 11.45 7.04 -10.99 -0.08 11.37 16
10 O -0.56 -13.35 15.43 5.55 0.09 -13.26 16
11 C 0.04 0.99 2.01 -94.08 -0.19 0.80 16
12 H 0.07 1.54 6.42 -51.93 -0.33 1.21 16
13 C -0.59 -14.46 7.46 -34.44 -0.26 -14.72 16
14 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16
15 C 0.03 0.85 5.45 -17.82 -0.10 0.75 16
16 N -0.89 -24.06 13.62 55.43 0.76 -23.31 16
17 Si 1.07 23.05 29.91 -169.99 -5.08 17.97 16
18 H -0.29 -5.85 7.11 56.52 0.40 -5.45 16
19 H -0.29 -6.01 7.11 56.52 0.40 -5.61 16
20 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16
21 C -0.02 -0.47 4.30 -104.62 -0.45 -0.92 16
22 C -0.08 -1.75 8.32 -39.58 -0.33 -2.08 16
23 C -0.13 -2.61 10.05 -39.59 -0.40 -3.01 16
24 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16
25 C -0.13 -2.46 10.05 -39.58 -0.40 -2.86 16
26 C -0.13 -2.72 9.67 -39.59 -0.38 -3.10 16
27 C 0.01 0.12 5.42 -1.90 -0.01 0.11 16
28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16
29 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16
30 H 0.03 0.26 8.00 -51.93 -0.42 -0.15 16
31 H 0.05 0.42 7.74 -51.93 -0.40 0.01 16
32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.08 0.79 7.85 -51.93 -0.41 0.38 16
34 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16
35 H 0.38 4.46 7.78 45.56 0.35 4.81 16
36 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16
37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
38 H 0.40 6.40 7.16 -40.82 -0.29 6.11 16
39 H 0.27 7.29 6.66 -40.82 -0.27 7.02 16
40 H 0.11 2.55 7.88 -52.48 -0.41 2.14 16
41 H 0.11 1.81 8.06 -52.48 -0.42 1.38 16
42 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16
43 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16
44 H 0.11 2.20 7.96 -52.49 -0.42 1.78 16
45 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16
46 H 0.06 0.73 7.84 -51.93 -0.41 0.33 16
LS Contribution 376.15 15.07 5.67 5.67
Total: -1.00 -30.20 376.15 -9.81 -40.01
By element:
Atomic # 1 Polarization: 21.50 SS G_CDS: -6.43 Total: 15.06 kcal
Atomic # 6 Polarization: -11.43 SS G_CDS: -2.71 Total: -14.14 kcal
Atomic # 7 Polarization: -42.67 SS G_CDS: -0.88 Total: -43.55 kcal
Atomic # 8 Polarization: -20.64 SS G_CDS: -0.38 Total: -21.02 kcal
Atomic # 14 Polarization: 23.05 SS G_CDS: -5.08 Total: 17.97 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -30.20 -9.81 -40.01 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001433890957.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.972 kcal
(2) G-P(sol) polarization free energy of solvation -30.196 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds