Wall clock time and date at job start Tue Mar 31 2020 12:49:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46900 * 1
3 3 C 1.47891 * 110.99849 * 2 1
4 4 C 1.53998 * 107.05593 * 145.84544 * 3 2 1
5 5 C 1.54594 * 105.13872 * 358.77402 * 4 3 2
6 6 O 1.42898 * 110.72120 * 96.58276 * 5 4 3
7 7 C 1.53006 * 110.72095 * 219.68394 * 5 4 3
8 8 N 1.46499 * 109.46822 * 179.97438 * 7 5 4
9 9 C 1.34774 * 120.00269 * 179.97438 * 8 7 5
10 10 O 1.21285 * 119.99739 * 0.02562 * 9 8 7
11 11 C 1.50698 * 120.00465 * 180.02562 * 9 8 7
12 12 H 1.09002 * 109.46843 * 60.00844 * 11 9 8
13 13 C 1.50699 * 109.46999 * 300.00634 * 11 9 8
14 14 H 1.07997 * 120.00181 * 335.01629 * 13 11 9
15 15 C 1.37878 * 119.99877 * 155.01906 * 13 11 9
16 16 N 1.31517 * 120.00004 * 355.28356 * 15 13 11
17 17 Si 1.86796 * 120.00011 * 175.28161 * 15 13 11
18 18 H 1.48497 * 109.46908 * 90.00339 * 17 15 13
19 19 H 1.48491 * 109.47146 * 330.00148 * 17 15 13
20 20 H 1.48501 * 109.46992 * 210.00016 * 17 15 13
21 21 C 1.50700 * 109.47241 * 180.02562 * 11 9 8
22 22 C 1.38237 * 119.99871 * 66.35810 * 21 11 9
23 23 C 1.38230 * 119.99867 * 179.80901 * 22 21 11
24 24 C 1.38230 * 120.00192 * 0.41707 * 23 22 21
25 25 C 1.38239 * 119.99979 * 359.81493 * 24 23 22
26 26 C 1.38232 * 120.00161 * 246.63225 * 21 11 9
27 27 C 1.48529 * 110.99724 * 117.40145 * 2 1 3
28 28 H 1.08998 * 109.47334 * 59.87376 * 1 2 3
29 29 H 1.09009 * 109.47358 * 179.87025 * 1 2 3
30 30 H 1.09001 * 109.47477 * 299.87457 * 1 2 3
31 31 H 1.09004 * 109.92245 * 26.49188 * 3 2 1
32 32 H 1.08998 * 109.92250 * 265.19609 * 3 2 1
33 33 H 1.09006 * 110.30871 * 239.85662 * 4 3 2
34 34 H 1.09005 * 110.39249 * 117.73783 * 4 3 2
35 35 H 0.96704 * 113.99788 * 182.44691 * 6 5 4
36 36 H 1.08996 * 109.47185 * 60.00264 * 7 5 4
37 37 H 1.08996 * 109.47077 * 300.00284 * 7 5 4
38 38 H 0.97005 * 119.99694 * 0.02562 * 8 7 5
39 39 H 0.97009 * 119.99822 * 5.56476 * 16 15 13
40 40 H 1.08005 * 119.99932 * 0.02562 * 22 21 11
41 41 H 1.08003 * 120.00037 * 180.20940 * 23 22 21
42 42 H 1.08001 * 120.00144 * 179.78830 * 24 23 22
43 43 H 1.07997 * 119.99773 * 179.97438 * 25 24 23
44 44 H 1.07997 * 120.00329 * 359.97438 * 26 21 11
45 45 H 1.09001 * 110.67275 * 81.84337 * 27 2 1
46 46 H 1.09005 * 110.66712 * 318.70591 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9990 1.3807 0.0000
4 6 3.2982 1.3658 0.8266
5 6 3.4491 -0.0930 1.3154
6 8 4.3208 -0.8275 0.4535
7 6 3.9588 -0.1308 2.7575
8 7 4.0909 -1.5235 3.1924
9 6 4.5274 -1.8025 4.4366
10 8 4.8104 -0.9005 5.1964
11 6 4.6639 -3.2352 4.8837
12 1 5.3704 -3.7526 4.2347
13 6 3.3212 -3.9151 4.8079
14 1 2.4154 -3.3303 4.8708
15 6 3.2490 -5.2838 4.6582
16 7 4.3483 -5.9856 4.4885
17 14 1.5900 -6.1414 4.6964
18 1 1.0371 -6.2111 3.3200
19 1 0.6586 -5.3791 5.5660
20 1 1.7556 -7.5160 5.2335
21 6 5.1658 -3.2724 6.3042
22 6 4.3727 -2.7939 7.3303
23 6 4.8315 -2.8317 8.6337
24 6 6.0869 -3.3400 8.9100
25 6 6.8820 -3.8141 7.8834
26 6 6.4216 -3.7798 6.5804
27 6 2.0012 -0.6382 1.2311
28 1 -0.3634 0.5158 -0.8888
29 1 -0.3634 -1.0277 -0.0023
30 1 -0.3634 0.5119 0.8911
31 1 1.2758 2.0561 0.4571
32 1 2.2122 1.6967 -1.0212
33 1 3.2136 2.0429 1.6767
34 1 4.1478 1.6460 0.2038
35 1 4.4196 -1.7587 0.6949
36 1 3.2521 0.3865 3.4063
37 1 4.9299 0.3612 2.8126
38 1 3.8649 -2.2449 2.5845
39 1 5.2143 -5.5527 4.5492
40 1 3.3931 -2.3938 7.1140
41 1 4.2105 -2.4610 9.4358
42 1 6.4467 -3.3664 9.9280
43 1 7.8630 -4.2109 8.0993
44 1 7.0429 -4.1500 5.7784
45 1 2.0040 -1.7236 1.1315
46 1 1.4237 -0.3323 2.1035
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001433890957.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:49:51
Heat of formation + Delta-G solvation = -82.566534 kcal
Electronic energy + Delta-G solvation = -27306.848732 eV
Core-core repulsion = 23580.922748 eV
Total energy + Delta-G solvation = -3725.925985 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.32509 -40.49676 -39.34287 -37.14966 -35.87959 -35.13266 -32.78919 -32.53988
-31.64719 -30.23146 -28.98870 -27.60077 -25.80615 -25.02460 -23.28421 -22.72799
-22.16811 -21.51658 -21.10592 -19.32149 -18.44771 -17.60969 -17.52859 -16.95657
-16.67391 -16.40482 -16.16565 -15.74847 -15.67003 -15.51110 -15.23348 -14.77799
-14.70797 -14.31081 -14.26919 -14.07742 -13.86705 -13.77952 -13.43322 -13.23369
-13.10157 -12.85326 -12.60112 -12.57982 -12.51362 -12.18778 -12.00626 -11.95288
-11.87347 -11.77069 -11.03979 -10.92341 -10.69981 -10.49638 -10.08440 -9.66560
-9.45135 -9.35454 -8.61882 -6.38702 0.64299 0.69682 1.54621 1.62452
1.78701 1.80079 2.29457 2.55221 2.91979 3.05559 3.08256 3.21483
3.45590 3.52385 3.77387 4.09372 4.13904 4.20514 4.20704 4.26658
4.33740 4.38218 4.41493 4.45204 4.56319 4.61221 4.64864 4.68161
4.72253 4.79165 4.82807 4.90218 4.96695 4.98766 5.11410 5.24569
5.31197 5.46232 5.68161 5.71537 5.73018 5.77424 5.99968 6.04506
6.13938 6.29927 6.49836 6.57882 6.63470 7.35474 7.39938 8.76311
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.012782 B = 0.004178 C = 0.003492
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2190.065633 B = 6700.259509 C = 8017.104121
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.014 3.986
2 N -0.530 5.530
3 C 0.038 3.962
4 C -0.116 4.116
5 C 0.128 3.872
6 O -0.550 6.550
7 C 0.107 3.893
8 N -0.716 5.716
9 C 0.533 3.467
10 O -0.588 6.588
11 C 0.043 3.957
12 H 0.050 0.950
13 C -0.586 4.586
14 H 0.049 0.951
15 C -0.006 4.006
16 N -0.920 5.920
17 Si 1.107 2.893
18 H -0.266 1.266
19 H -0.278 1.278
20 H -0.290 1.290
21 C -0.048 4.048
22 C -0.106 4.106
23 C -0.134 4.134
24 C -0.140 4.140
25 C -0.128 4.128
26 C -0.150 4.150
27 C 0.012 3.988
28 H 0.083 0.917
29 H 0.068 0.932
30 H 0.032 0.968
31 H 0.061 0.939
32 H 0.088 0.912
33 H 0.096 0.904
34 H 0.089 0.911
35 H 0.383 0.617
36 H 0.067 0.933
37 H 0.065 0.935
38 H 0.407 0.593
39 H 0.264 0.736
40 H 0.094 0.906
41 H 0.137 0.863
42 H 0.149 0.851
43 H 0.142 0.858
44 H 0.109 0.891
45 H 0.082 0.918
46 H 0.054 0.946
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.890 10.636 -4.774 12.290
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 N -0.254 5.254
3 C -0.089 4.089
4 C -0.154 4.154
5 C 0.086 3.914
6 O -0.357 6.357
7 C -0.018 4.018
8 N -0.368 5.368
9 C 0.322 3.678
10 O -0.469 6.469
11 C 0.022 3.978
12 H 0.068 0.932
13 C -0.623 4.623
14 H 0.067 0.933
15 C -0.208 4.208
16 N -0.555 5.555
17 Si 0.930 3.070
18 H -0.192 1.192
19 H -0.204 1.204
20 H -0.216 1.216
21 C -0.049 4.049
22 C -0.124 4.124
23 C -0.152 4.152
24 C -0.158 4.158
25 C -0.145 4.145
26 C -0.169 4.169
27 C -0.116 4.116
28 H 0.101 0.899
29 H 0.087 0.913
30 H 0.051 0.949
31 H 0.079 0.921
32 H 0.106 0.894
33 H 0.115 0.885
34 H 0.108 0.892
35 H 0.232 0.768
36 H 0.086 0.914
37 H 0.083 0.917
38 H 0.243 0.757
39 H 0.075 0.925
40 H 0.113 0.887
41 H 0.155 0.845
42 H 0.167 0.833
43 H 0.160 0.840
44 H 0.127 0.873
45 H 0.100 0.900
46 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -4.230 10.128 -5.232 12.159
hybrid contribution 0.371 0.802 0.909 1.267
sum -3.860 10.930 -4.323 12.371
Atomic orbital electron populations
1.22594 0.86720 1.02643 1.01513 1.64714 1.09177 1.15623 1.35885
1.22922 0.95193 0.89578 1.01233 1.22456 0.99243 0.92623 1.01063
1.22212 0.88371 0.94111 0.86719 1.86531 1.67332 1.26702 1.55154
1.21945 1.01527 0.83380 0.94907 1.45712 1.68002 1.08374 1.14718
1.21073 0.73985 0.91645 0.81064 1.90568 1.52246 1.49522 1.54559
1.18092 0.98808 0.89859 0.91087 0.93182 1.21629 0.90155 0.94320
1.56242 0.93309 1.26908 1.06498 0.95338 0.92034 1.70867 0.98954
1.40215 1.45500 0.83032 0.71149 0.74900 0.77936 1.19160 1.20366
1.21551 1.20168 0.93040 0.95020 0.96637 1.20825 0.98847 0.99467
0.93299 1.21365 0.97234 1.00601 0.96021 1.21319 0.94349 1.00183
0.99964 1.21325 1.00710 1.00261 0.92251 1.21178 0.95754 1.02151
0.97782 1.23866 0.94998 1.00664 0.92083 0.89856 0.91330 0.94946
0.92105 0.89358 0.88534 0.89217 0.76788 0.91436 0.91693 0.75683
0.92506 0.88736 0.84472 0.83291 0.84018 0.87322 0.89955 0.92760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.25 9.40 127.69 1.20 1.45 16
2 N -0.53 -11.82 5.55 -909.16 -5.05 -16.87 16
3 C 0.04 0.71 6.70 86.45 0.58 1.29 16
4 C -0.12 -2.31 6.27 31.47 0.20 -2.11 16
5 C 0.13 3.13 1.03 -9.59 -0.01 3.12 16
6 O -0.55 -14.60 13.11 -148.98 -1.95 -16.55 16
7 C 0.11 3.14 4.74 86.38 0.41 3.55 16
8 N -0.72 -25.04 5.10 -463.06 -2.36 -27.40 16
9 C 0.53 23.53 7.04 87.66 0.62 24.15 16
10 O -0.59 -28.70 15.43 -3.05 -0.05 -28.75 16
11 C 0.04 2.04 2.01 -13.03 -0.03 2.01 16
12 H 0.05 2.50 6.42 -2.39 -0.02 2.48 16
13 C -0.59 -29.25 7.46 25.60 0.19 -29.06 16
14 H 0.05 2.47 7.81 -2.91 -0.02 2.45 16
15 C -0.01 -0.31 5.45 84.65 0.46 0.16 16
16 N -0.92 -50.68 13.62 21.45 0.29 -50.38 16
17 Si 1.11 46.48 29.91 68.60 2.05 48.53 16
18 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16
19 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16
20 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16
21 C -0.05 -2.25 4.30 -19.87 -0.09 -2.34 16
22 C -0.11 -4.82 8.32 22.27 0.19 -4.63 16
23 C -0.13 -5.07 10.05 22.27 0.22 -4.84 16
24 C -0.14 -4.77 10.05 22.27 0.22 -4.55 16
25 C -0.13 -4.64 10.05 22.27 0.22 -4.41 16
26 C -0.15 -6.51 9.67 22.27 0.22 -6.29 16
27 C 0.01 0.30 5.42 86.65 0.47 0.77 16
28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
29 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16
30 H 0.03 0.56 8.00 -2.39 -0.02 0.54 16
31 H 0.06 0.95 7.74 -2.38 -0.02 0.93 16
32 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.10 1.65 7.85 -2.38 -0.02 1.63 16
34 H 0.09 1.77 8.08 -2.38 -0.02 1.75 16
35 H 0.38 9.07 7.78 -74.05 -0.58 8.49 16
36 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16
37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
38 H 0.41 13.33 7.16 -92.70 -0.66 12.66 16
39 H 0.26 14.63 6.66 -92.70 -0.62 14.01 16
40 H 0.09 4.47 7.88 -2.91 -0.02 4.45 16
41 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16
42 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16
43 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16
44 H 0.11 4.54 7.96 -2.91 -0.02 4.51 16
45 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16
46 H 0.05 1.35 7.84 -2.38 -0.02 1.33 16
Total: -1.00 -65.44 376.15 -2.09 -67.53
By element:
Atomic # 1 Polarization: 45.73 SS G_CDS: -0.10 Total: 45.63 kcal
Atomic # 6 Polarization: -26.81 SS G_CDS: 5.08 Total: -21.74 kcal
Atomic # 7 Polarization: -87.54 SS G_CDS: -7.12 Total: -94.65 kcal
Atomic # 8 Polarization: -43.30 SS G_CDS: -2.00 Total: -45.30 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.05 Total: 48.53 kcal
Total: -65.44 -2.09 -67.53 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001433890957.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.037 kcal
(2) G-P(sol) polarization free energy of solvation -65.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.475 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.092 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.530 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds