Wall clock time and date at job start Tue Mar 31 2020 12:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21284 * 120.00196 * 2 1 4 4 N 1.34772 * 119.99869 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00149 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47379 * 174.98212 * 5 4 2 7 7 N 1.46908 * 112.84995 * 51.18971 * 6 5 4 8 8 C 1.46893 * 110.99889 * 64.41984 * 7 6 5 9 9 C 1.50696 * 109.47223 * 174.94273 * 8 7 6 10 10 C 1.38297 * 119.93318 * 269.72775 * 9 8 7 11 11 C 1.38097 * 120.07127 * 179.72223 * 10 9 8 12 12 C 1.38883 * 119.92935 * 0.57198 * 11 10 9 13 13 O 1.35749 * 120.07143 * 179.67798 * 12 11 10 14 14 C 1.34825 * 117.00198 * 185.67908 * 13 12 11 15 15 H 1.08003 * 120.00089 * 5.09361 * 14 13 12 16 16 C 1.38656 * 120.00273 * 185.08256 * 14 13 12 17 17 N 1.31561 * 119.99946 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99754 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47164 * 89.99656 * 18 16 14 20 20 H 1.48498 * 109.46985 * 209.99437 * 18 16 14 21 21 H 1.48500 * 109.47354 * 329.99405 * 18 16 14 22 22 C 1.38885 * 119.86230 * 359.70465 * 12 11 10 23 23 C 1.38101 * 119.92445 * 359.97438 * 22 12 11 24 24 C 1.53782 * 113.61445 * 279.88635 * 6 5 4 25 25 C 1.53779 * 87.07990 * 220.01512 * 24 6 5 26 26 C 1.53781 * 87.08340 * 25.43347 * 25 24 6 27 27 H 1.08989 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47048 * 300.00750 * 1 2 3 29 29 H 1.09008 * 109.46626 * 60.00145 * 1 2 3 30 30 H 0.97007 * 119.99765 * 359.73321 * 4 2 1 31 31 H 1.08996 * 109.47348 * 294.97946 * 5 4 2 32 32 H 1.08997 * 109.46928 * 54.98021 * 5 4 2 33 33 H 1.00902 * 110.99763 * 300.46440 * 7 6 5 34 34 H 1.09003 * 109.47194 * 294.94554 * 8 7 6 35 35 H 1.09003 * 109.47337 * 54.94640 * 8 7 6 36 36 H 1.07999 * 119.96615 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.04166 * 180.27034 * 11 10 9 38 38 H 0.96997 * 119.99553 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03675 * 180.02562 * 22 12 11 40 40 H 1.08005 * 119.96006 * 180.02562 * 23 22 12 41 41 H 1.08997 * 113.61529 * 334.56623 * 24 6 5 42 42 H 1.09001 * 113.61741 * 105.47208 * 24 6 5 43 43 H 1.09000 * 113.61808 * 270.87785 * 25 24 6 44 44 H 1.09010 * 113.61133 * 139.97967 * 25 24 6 45 45 H 1.09003 * 113.61225 * 220.01929 * 26 25 24 46 46 H 1.08996 * 113.61734 * 89.11461 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1558 -2.6042 0.1278 7 7 3.5464 -3.5142 -0.8513 8 6 3.9194 -3.1393 -2.2218 9 6 3.3805 -4.1634 -3.1870 10 6 4.1497 -5.2603 -3.5301 11 6 3.6565 -6.2035 -4.4100 12 6 2.3911 -6.0434 -4.9597 13 8 1.9060 -6.9654 -5.8300 14 6 0.7232 -6.6911 -6.4161 15 1 0.2464 -5.7366 -6.2492 16 6 0.1191 -7.6344 -7.2333 17 7 -1.0348 -7.3665 -7.8056 18 14 0.9437 -9.2855 -7.5216 19 1 0.4898 -10.2524 -6.4899 20 1 0.5793 -9.7922 -8.8691 21 1 2.4174 -9.1247 -7.4351 22 6 1.6233 -4.9378 -4.6177 23 6 2.1198 -4.0016 -3.7321 24 6 4.1325 -3.1413 1.5685 25 6 5.4865 -3.8021 1.2605 26 6 5.6884 -2.7102 0.1966 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6958 -2.0072 0.0048 31 1 4.0096 -0.7335 -0.9304 32 1 4.0089 -0.5774 0.8427 33 1 2.5434 -3.5415 -0.7442 34 1 3.4999 -2.1613 -2.4579 35 1 5.0055 -3.0984 -2.3044 36 1 5.1357 -5.3816 -3.1063 37 1 4.2558 -7.0621 -4.6741 38 1 -1.4575 -8.0265 -8.3770 39 1 0.6389 -4.8108 -5.0432 40 1 1.5230 -3.1418 -3.4654 41 1 4.1902 -2.3604 2.3267 42 1 3.3306 -3.8556 1.7554 43 1 5.3980 -4.8058 0.8448 44 1 6.1976 -3.7454 2.0848 45 1 6.1426 -3.0764 -0.7242 46 1 6.1715 -1.8113 0.5797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484621110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:40 Heat of formation + Delta-G solvation = -18.437807 kcal Electronic energy + Delta-G solvation = -26278.257795 eV Core-core repulsion = 22555.112641 eV Total energy + Delta-G solvation = -3723.145154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.54181 -39.31964 -39.04264 -36.94466 -34.82545 -33.75045 -32.38843 -30.68983 -30.29230 -29.45729 -27.28759 -26.25495 -25.54260 -24.02396 -22.55594 -22.06765 -20.88137 -20.36537 -18.97961 -17.94502 -17.46605 -17.27153 -16.62273 -16.05815 -15.59565 -15.23414 -15.07925 -14.76456 -14.45815 -14.05874 -13.95218 -13.85554 -13.77707 -13.43717 -13.25351 -12.89392 -12.70152 -12.60563 -12.54966 -12.30942 -12.20016 -11.90194 -11.75322 -11.34940 -11.09603 -10.97211 -10.78539 -10.71226 -10.61808 -10.39769 -10.17957 -10.11260 -9.44866 -9.37366 -8.90977 -8.55986 -8.29241 -7.36624 -6.45681 -4.12257 2.09112 2.13035 2.39409 2.91846 3.19406 3.23189 3.37806 3.90717 4.20467 4.22134 4.41013 4.44730 4.52639 4.64731 4.65631 4.84862 4.91930 5.04956 5.11177 5.12877 5.18045 5.29398 5.34400 5.42562 5.44156 5.52943 5.56464 5.63541 5.68899 5.73935 5.76338 5.87315 6.00593 6.08887 6.12657 6.18288 6.30285 6.53396 6.74404 6.88445 7.01817 7.14478 7.19661 7.23058 7.30684 7.57444 7.75322 7.94553 7.99802 8.89648 9.52120 10.61951 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002839 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.071989 B = 9861.922550 C =11187.796778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.511 3.489 3 O -0.551 6.551 4 N -0.727 5.727 5 C 0.098 3.902 6 C 0.073 3.927 7 N -0.652 5.652 8 C 0.115 3.885 9 C -0.175 4.175 10 C -0.053 4.053 11 C -0.194 4.194 12 C 0.162 3.838 13 O -0.217 6.217 14 C -0.390 4.390 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.221 4.221 23 C -0.067 4.067 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.125 4.125 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.339 0.661 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.280 0.720 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.219 9.337 17.969 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.298 3.702 3 O -0.428 6.428 4 N -0.381 5.381 5 C -0.028 4.028 6 C -0.019 4.019 7 N -0.283 5.283 8 C -0.013 4.013 9 C -0.176 4.176 10 C -0.072 4.072 11 C -0.213 4.213 12 C 0.109 3.891 13 O -0.122 6.122 14 C -0.465 4.465 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.240 4.240 23 C -0.086 4.086 24 C -0.164 4.164 25 C -0.164 4.164 26 C -0.163 4.163 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.234 0.766 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.052 9.315 17.776 22.016 hybrid contribution -0.839 -0.234 -0.443 0.977 sum 8.214 9.081 17.332 21.221 Atomic orbital electron populations 1.21863 0.91531 1.04459 1.05372 1.20843 0.90686 0.83358 0.75286 1.90722 1.70856 1.31433 1.49825 1.46096 1.07488 1.08817 1.75672 1.21993 0.79990 0.98263 1.02520 1.22425 0.96546 0.88800 0.94116 1.60593 1.14775 1.49987 1.02988 1.20647 1.00162 0.94727 0.85760 1.19128 0.96288 0.98840 1.03366 1.20446 0.98376 0.92757 0.95619 1.20218 0.95047 1.02201 1.03849 1.19158 0.92317 0.88875 0.88722 1.83586 1.37084 1.41349 1.50149 1.20756 0.95227 1.03943 1.26593 0.87699 1.24474 0.94976 0.99199 0.95349 1.69647 1.15193 1.36354 1.30485 0.86177 0.80932 0.82179 0.77603 1.19875 1.20763 1.18323 1.21235 1.02137 0.96873 1.03796 1.20620 0.94481 0.97531 0.95934 1.22973 0.98949 1.00176 0.94316 1.22667 0.96506 0.99063 0.98140 1.22948 0.93409 0.99471 1.00481 0.90411 0.88752 0.88578 0.76619 0.91548 0.90921 0.84144 0.94993 0.90696 0.86952 0.86592 0.91018 0.85058 0.87816 0.90037 0.90880 0.89233 0.91948 0.90500 0.89877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.39 36.01 0.37 -0.80 16 2 C 0.51 5.35 7.94 -10.98 -0.09 5.26 16 3 O -0.55 -8.22 17.10 5.55 0.09 -8.13 16 4 N -0.73 -6.31 5.44 -60.30 -0.33 -6.64 16 5 C 0.10 0.91 4.63 -4.04 -0.02 0.89 16 6 C 0.07 0.61 0.70 -130.78 -0.09 0.52 16 7 N -0.65 -6.49 6.16 -100.39 -0.62 -7.11 16 8 C 0.11 1.35 5.35 -4.98 -0.03 1.32 16 9 C -0.17 -2.65 5.44 -104.58 -0.57 -3.22 16 10 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 11 C -0.19 -3.71 9.99 -39.39 -0.39 -4.11 16 12 C 0.16 3.62 6.65 -39.10 -0.26 3.36 16 13 O -0.22 -5.62 8.59 0.07 0.00 -5.62 16 14 C -0.39 -10.80 9.90 30.89 0.31 -10.50 16 15 H 0.11 2.97 5.52 -52.48 -0.29 2.68 16 16 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 17 N -0.88 -25.07 13.96 55.48 0.77 -24.30 16 18 Si 0.91 21.39 28.62 -169.99 -4.86 16.53 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 22 C -0.22 -4.57 9.14 -39.39 -0.36 -4.93 16 23 C -0.07 -1.12 9.69 -39.61 -0.38 -1.51 16 24 C -0.13 -0.94 7.44 -25.92 -0.19 -1.14 16 25 C -0.13 -0.98 7.99 -25.92 -0.21 -1.19 16 26 C -0.12 -0.99 7.15 -25.92 -0.19 -1.18 16 27 H 0.08 0.38 7.91 -51.94 -0.41 -0.03 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.40 2.74 6.82 -40.82 -0.28 2.46 16 31 H 0.07 0.72 7.39 -51.93 -0.38 0.34 16 32 H 0.07 0.71 7.99 -51.93 -0.41 0.29 16 33 H 0.34 3.26 7.21 -39.29 -0.28 2.98 16 34 H 0.03 0.38 7.12 -51.93 -0.37 0.01 16 35 H 0.07 0.85 6.49 -51.93 -0.34 0.51 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.13 2.88 5.71 -52.49 -0.30 2.58 16 40 H 0.10 1.50 8.06 -52.48 -0.42 1.07 16 41 H 0.08 0.56 8.00 -51.93 -0.42 0.15 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.08 0.67 6.71 -51.93 -0.35 0.32 16 46 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -31.26 376.92 -8.60 -39.86 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.77 Total: 6.52 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -2.57 Total: -16.80 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.17 Total: -38.04 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: 0.10 Total: -13.75 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.26 -8.60 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484621110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.422 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds