Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21284 * 120.00196 * 2 1 4 4 N 1.34772 * 119.99869 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00149 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47379 * 174.98212 * 5 4 2 7 7 N 1.46908 * 112.84995 * 51.18971 * 6 5 4 8 8 C 1.46893 * 110.99889 * 64.41984 * 7 6 5 9 9 C 1.50696 * 109.47223 * 174.94273 * 8 7 6 10 10 C 1.38297 * 119.93318 * 269.72775 * 9 8 7 11 11 C 1.38097 * 120.07127 * 179.72223 * 10 9 8 12 12 C 1.38883 * 119.92935 * 0.57198 * 11 10 9 13 13 O 1.35749 * 120.07143 * 179.67798 * 12 11 10 14 14 C 1.34825 * 117.00198 * 185.67908 * 13 12 11 15 15 H 1.08003 * 120.00089 * 5.09361 * 14 13 12 16 16 C 1.38656 * 120.00273 * 185.08256 * 14 13 12 17 17 N 1.31561 * 119.99946 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 119.99754 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47164 * 89.99656 * 18 16 14 20 20 H 1.48498 * 109.46985 * 209.99437 * 18 16 14 21 21 H 1.48500 * 109.47354 * 329.99405 * 18 16 14 22 22 C 1.38885 * 119.86230 * 359.70465 * 12 11 10 23 23 C 1.38101 * 119.92445 * 359.97438 * 22 12 11 24 24 C 1.53782 * 113.61445 * 279.88635 * 6 5 4 25 25 C 1.53779 * 87.07990 * 220.01512 * 24 6 5 26 26 C 1.53781 * 87.08340 * 25.43347 * 25 24 6 27 27 H 1.08989 * 109.47300 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47048 * 300.00750 * 1 2 3 29 29 H 1.09008 * 109.46626 * 60.00145 * 1 2 3 30 30 H 0.97007 * 119.99765 * 359.73321 * 4 2 1 31 31 H 1.08996 * 109.47348 * 294.97946 * 5 4 2 32 32 H 1.08997 * 109.46928 * 54.98021 * 5 4 2 33 33 H 1.00902 * 110.99763 * 300.46440 * 7 6 5 34 34 H 1.09003 * 109.47194 * 294.94554 * 8 7 6 35 35 H 1.09003 * 109.47337 * 54.94640 * 8 7 6 36 36 H 1.07999 * 119.96615 * 359.97438 * 10 9 8 37 37 H 1.07997 * 120.04166 * 180.27034 * 11 10 9 38 38 H 0.96997 * 119.99553 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.03675 * 180.02562 * 22 12 11 40 40 H 1.08005 * 119.96006 * 180.02562 * 23 22 12 41 41 H 1.08997 * 113.61529 * 334.56623 * 24 6 5 42 42 H 1.09001 * 113.61741 * 105.47208 * 24 6 5 43 43 H 1.09000 * 113.61808 * 270.87785 * 25 24 6 44 44 H 1.09010 * 113.61133 * 139.97967 * 25 24 6 45 45 H 1.09003 * 113.61225 * 220.01929 * 26 25 24 46 46 H 1.08996 * 113.61734 * 89.11461 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1558 -2.6042 0.1278 7 7 3.5464 -3.5142 -0.8513 8 6 3.9194 -3.1393 -2.2218 9 6 3.3805 -4.1634 -3.1870 10 6 4.1497 -5.2603 -3.5301 11 6 3.6565 -6.2035 -4.4100 12 6 2.3911 -6.0434 -4.9597 13 8 1.9060 -6.9654 -5.8300 14 6 0.7232 -6.6911 -6.4161 15 1 0.2464 -5.7366 -6.2492 16 6 0.1191 -7.6344 -7.2333 17 7 -1.0348 -7.3665 -7.8056 18 14 0.9437 -9.2855 -7.5216 19 1 0.4898 -10.2524 -6.4899 20 1 0.5793 -9.7922 -8.8691 21 1 2.4174 -9.1247 -7.4351 22 6 1.6233 -4.9378 -4.6177 23 6 2.1198 -4.0016 -3.7321 24 6 4.1325 -3.1413 1.5685 25 6 5.4865 -3.8021 1.2605 26 6 5.6884 -2.7102 0.1966 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.6958 -2.0072 0.0048 31 1 4.0096 -0.7335 -0.9304 32 1 4.0089 -0.5774 0.8427 33 1 2.5434 -3.5415 -0.7442 34 1 3.4999 -2.1613 -2.4579 35 1 5.0055 -3.0984 -2.3044 36 1 5.1357 -5.3816 -3.1063 37 1 4.2558 -7.0621 -4.6741 38 1 -1.4575 -8.0265 -8.3770 39 1 0.6389 -4.8108 -5.0432 40 1 1.5230 -3.1418 -3.4654 41 1 4.1902 -2.3604 2.3267 42 1 3.3306 -3.8556 1.7554 43 1 5.3980 -4.8058 0.8448 44 1 6.1976 -3.7454 2.0848 45 1 6.1426 -3.0764 -0.7242 46 1 6.1715 -1.8113 0.5797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484621110.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = -39.675182 kcal Electronic energy + Delta-G solvation = -26279.178717 eV Core-core repulsion = 22555.112641 eV Total energy + Delta-G solvation = -3724.066076 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34450 -40.80793 -39.97341 -38.49748 -35.65018 -34.87419 -34.30971 -31.79946 -31.45716 -30.66133 -28.09852 -27.45898 -26.76965 -25.25214 -23.67812 -23.20132 -21.92934 -21.56701 -19.84044 -19.65040 -19.09352 -18.16146 -17.40287 -16.98269 -16.71952 -16.35870 -16.17171 -15.97865 -15.72272 -15.52106 -15.44945 -14.98856 -14.66698 -14.62368 -14.35407 -14.23894 -14.07321 -13.84708 -13.39007 -13.18702 -13.12962 -13.03889 -12.89512 -12.56789 -12.46208 -12.33466 -12.07878 -11.92505 -11.74400 -11.41585 -11.28727 -11.08781 -10.94622 -10.88749 -10.17920 -9.78027 -9.42238 -8.96760 -8.49950 -6.22100 0.59570 0.63878 1.31990 1.35704 1.52311 1.58896 2.20490 2.28308 2.72748 3.02022 3.13212 3.32005 3.55409 3.72745 3.81025 3.94376 4.02854 4.05499 4.09379 4.22727 4.41706 4.43021 4.49206 4.50685 4.59860 4.62804 4.68219 4.76509 4.84474 4.88562 4.95237 5.02651 5.04167 5.17348 5.19129 5.27979 5.31640 5.38835 5.44052 5.53740 5.60096 5.77512 5.81843 5.92055 6.07522 6.27250 6.38766 6.48258 6.84830 7.18317 7.60202 8.61738 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015708 B = 0.002839 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.071989 B = 9861.922550 C =11187.796778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.717 5.717 5 C 0.102 3.898 6 C 0.079 3.921 7 N -0.652 5.652 8 C 0.121 3.879 9 C -0.146 4.146 10 C -0.047 4.047 11 C -0.193 4.193 12 C 0.120 3.880 13 O -0.246 6.246 14 C -0.397 4.397 15 H 0.080 0.920 16 C 0.010 3.990 17 N -0.924 5.924 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.268 1.268 21 H -0.263 1.263 22 C -0.236 4.236 23 C -0.065 4.065 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.125 4.125 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.343 0.657 34 H 0.035 0.965 35 H 0.089 0.911 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.284 0.716 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.164 9.455 20.372 24.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.294 3.706 3 O -0.483 6.483 4 N -0.370 5.370 5 C -0.025 4.025 6 C -0.013 4.013 7 N -0.284 5.284 8 C -0.007 4.007 9 C -0.147 4.147 10 C -0.066 4.066 11 C -0.213 4.213 12 C 0.071 3.929 13 O -0.154 6.154 14 C -0.474 4.474 15 H 0.098 0.902 16 C -0.188 4.188 17 N -0.565 5.565 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.193 1.193 21 H -0.187 1.187 22 C -0.255 4.255 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.162 4.162 26 C -0.163 4.163 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.115 0.885 30 H 0.247 0.753 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.053 0.947 35 H 0.107 0.893 36 H 0.167 0.833 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.010 9.425 20.217 24.875 hybrid contribution -1.266 -0.018 -0.918 1.564 sum 9.743 9.407 19.300 23.577 Atomic orbital electron populations 1.21894 0.88741 1.06192 1.05893 1.21494 0.92099 0.82861 0.74129 1.90700 1.72089 1.33200 1.52315 1.46060 1.07431 1.08976 1.74569 1.21940 0.80260 0.98650 1.01609 1.22399 0.96857 0.87758 0.94256 1.60518 1.15237 1.50441 1.02188 1.20576 1.00850 0.93362 0.85894 1.19580 0.94851 0.98461 1.01765 1.20876 0.99787 0.91731 0.94157 1.20519 0.93735 1.03276 1.03724 1.19704 0.93963 0.89396 0.89843 1.83524 1.36562 1.42920 1.52401 1.20681 0.96045 1.03343 1.27304 0.90236 1.25271 0.95632 1.02704 0.95240 1.69731 1.16783 1.37833 1.32115 0.85224 0.79453 0.77938 0.78157 1.19083 1.19299 1.18690 1.21237 1.01375 0.97835 1.05083 1.20883 0.95492 0.97298 0.94679 1.22959 0.98880 1.00277 0.93620 1.22629 0.96859 0.98329 0.98381 1.22999 0.92780 1.00038 1.00466 0.88079 0.87722 0.88497 0.75344 0.93035 0.91286 0.83750 0.94679 0.89298 0.83294 0.85660 0.90604 0.87627 0.85141 0.89143 0.90879 0.90309 0.90856 0.90899 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.39 71.24 0.74 -1.19 16 2 C 0.51 9.78 7.94 87.66 0.70 10.48 16 3 O -0.60 -17.64 17.10 -3.04 -0.05 -17.69 16 4 N -0.72 -10.75 5.44 -463.07 -2.52 -13.27 16 5 C 0.10 1.64 4.63 86.38 0.40 2.04 16 6 C 0.08 1.06 0.70 4.05 0.00 1.06 16 7 N -0.65 -10.61 6.16 -471.54 -2.90 -13.51 16 8 C 0.12 2.37 5.35 85.56 0.46 2.83 16 9 C -0.15 -3.94 5.44 -19.84 -0.11 -4.05 16 10 C -0.05 -1.36 9.69 22.25 0.22 -1.15 16 11 C -0.19 -7.15 9.99 22.39 0.22 -6.93 16 12 C 0.12 5.48 6.65 22.58 0.15 5.63 16 13 O -0.25 -13.26 8.59 -22.67 -0.19 -13.46 16 14 C -0.40 -23.24 9.90 67.92 0.67 -22.57 16 15 H 0.08 4.87 5.52 -2.91 -0.02 4.86 16 16 C 0.01 0.57 5.49 84.83 0.47 1.03 16 17 N -0.92 -54.90 13.96 21.61 0.30 -54.59 16 18 Si 0.97 45.17 28.62 68.60 1.96 47.13 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.24 -9.98 9.14 22.39 0.20 -9.77 16 23 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 24 C -0.12 -1.39 7.44 31.12 0.23 -1.16 16 25 C -0.12 -1.51 7.99 31.12 0.25 -1.27 16 26 C -0.12 -1.56 7.15 31.12 0.22 -1.34 16 27 H 0.10 0.67 7.91 -2.39 -0.02 0.65 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.41 4.37 6.82 -92.70 -0.63 3.74 16 31 H 0.05 1.01 7.39 -2.39 -0.02 0.99 16 32 H 0.07 1.20 7.99 -2.39 -0.02 1.18 16 33 H 0.34 5.33 7.21 -89.69 -0.65 4.68 16 34 H 0.04 0.71 7.12 -2.39 -0.02 0.69 16 35 H 0.09 1.60 6.49 -2.39 -0.02 1.58 16 36 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 37 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 38 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 39 H 0.11 4.97 5.71 -2.91 -0.02 4.96 16 40 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.09 0.94 8.00 -2.39 -0.02 0.92 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.07 1.00 6.71 -2.39 -0.02 0.98 16 46 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 Total: -1.00 -71.81 376.92 1.37 -70.44 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: -0.27 Total: 23.15 kcal Atomic # 6 Polarization: -33.24 SS G_CDS: 5.04 Total: -28.20 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -5.12 Total: -81.37 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.25 Total: -31.15 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.96 Total: 47.13 kcal Total: -71.81 1.37 -70.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484621110.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.767 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds