Wall clock time and date at job start Tue Mar 31 2020 13:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34769 * 120.00099 * 2 1 4 4 O 1.21588 * 120.00355 * 185.46664 * 3 2 1 5 5 C 1.47540 * 119.99875 * 5.47486 * 3 2 1 6 6 C 1.39660 * 120.19731 * 54.05515 * 5 3 2 7 7 C 1.37829 * 119.91795 * 180.02562 * 6 5 3 8 8 C 1.38576 * 120.32484 * 0.02562 * 7 6 5 9 9 C 1.38018 * 120.39950 * 0.02562 * 8 7 6 10 10 C 1.38838 * 120.07469 * 359.67477 * 9 8 7 11 11 O 1.35518 * 120.16568 * 180.29473 * 10 9 8 12 12 C 1.34818 * 116.99759 * 5.53784 * 11 10 9 13 13 H 1.07995 * 119.99977 * 5.30092 * 12 11 10 14 14 C 1.38699 * 119.99810 * 185.31320 * 12 11 10 15 15 N 1.31515 * 120.00165 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00055 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47161 * 89.99966 * 16 14 12 18 18 H 1.48502 * 109.47164 * 210.00153 * 16 14 12 19 19 H 1.48500 * 109.47413 * 330.00320 * 16 14 12 20 20 C 1.46507 * 119.99862 * 180.02562 * 2 1 3 21 21 C 1.53005 * 109.47005 * 358.82512 * 20 2 1 22 22 C 1.53004 * 109.46695 * 299.99803 * 21 20 2 23 23 C 1.52995 * 109.47328 * 300.00030 * 22 21 20 24 24 N 1.46897 * 109.47182 * 180.02562 * 23 22 21 25 25 C 1.53005 * 109.47257 * 60.00314 * 23 22 21 26 26 C 1.52995 * 109.46880 * 238.82184 * 20 2 1 27 27 H 1.09007 * 109.46836 * 276.15265 * 1 2 3 28 28 H 1.08992 * 109.47525 * 36.15077 * 1 2 3 29 29 H 1.08999 * 109.47259 * 156.15721 * 1 2 3 30 30 H 1.08002 * 120.04310 * 359.97438 * 6 5 3 31 31 H 1.07997 * 119.83757 * 179.97438 * 7 6 5 32 32 H 1.07997 * 119.79922 * 179.97438 * 8 7 6 33 33 H 1.07998 * 119.96592 * 179.97438 * 9 8 7 34 34 H 0.96997 * 120.00644 * 179.97438 * 15 14 12 35 35 H 1.08995 * 109.47002 * 118.82171 * 20 2 1 36 36 H 1.08995 * 109.46720 * 180.02562 * 21 20 2 37 37 H 1.08993 * 109.47080 * 59.99803 * 21 20 2 38 38 H 1.09000 * 109.46572 * 180.02562 * 22 21 20 39 39 H 1.08994 * 109.47360 * 60.00514 * 22 21 20 40 40 H 1.08994 * 109.47295 * 300.00524 * 23 22 21 41 41 H 1.00897 * 111.00307 * 180.02562 * 24 23 22 42 42 H 1.00899 * 110.99888 * 303.95743 * 24 23 22 43 43 H 1.09008 * 109.46537 * 59.99427 * 25 23 22 44 44 H 1.08992 * 109.47518 * 179.97438 * 25 23 22 45 45 H 1.09003 * 109.46840 * 179.97438 * 26 20 2 46 46 H 1.09000 * 109.47618 * 300.00102 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3506 1.1696 -0.1003 5 6 1.4062 2.4419 0.1219 6 6 0.5259 2.6472 1.1865 7 6 -0.1560 3.8401 1.2945 8 6 0.0269 4.8384 0.3510 9 6 0.8928 4.6493 -0.7070 10 6 1.5928 3.4565 -0.8286 11 8 2.4480 3.2712 -1.8634 12 6 2.6618 4.3248 -2.6769 13 1 2.2290 5.2857 -2.4410 14 6 3.4374 4.1746 -3.8169 15 7 3.6455 5.2022 -4.6108 16 14 4.1863 2.5126 -4.2247 17 1 3.2407 1.7368 -5.0669 18 1 5.4590 2.7111 -4.9636 19 1 4.4544 1.7686 -2.9678 20 6 2.1975 -1.2688 -0.0006 21 6 1.2035 -2.4316 0.0285 22 6 0.3462 -2.3381 1.2924 23 6 1.2479 -2.4070 2.5265 24 7 0.4248 -2.3179 3.7399 25 6 2.2420 -1.2442 2.4974 26 6 3.0992 -1.3376 1.2335 27 1 -0.3633 0.1102 1.0218 28 1 -0.3634 0.8297 -0.6062 29 1 -0.3634 -0.9399 -0.4154 30 1 0.3790 1.8718 1.9238 31 1 -0.8367 3.9973 2.1181 32 1 -0.5121 5.7697 0.4436 33 1 1.0296 5.4319 -1.4386 34 1 4.1882 5.0973 -5.4078 35 1 2.8082 -1.3353 -0.9009 36 1 1.7485 -3.3755 0.0285 37 1 0.5611 -2.3825 -0.8507 38 1 -0.3616 -3.1667 1.3133 39 1 -0.1988 -1.3942 1.2928 40 1 1.7929 -3.3509 2.5260 41 1 0.9976 -2.3607 4.5694 42 1 -0.1396 -1.4815 3.7334 43 1 1.6969 -0.3002 2.4978 44 1 2.8840 -1.2930 3.3768 45 1 3.6439 -2.2818 1.2333 46 1 3.8074 -0.5092 1.2128 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578391609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:11 Heat of formation + Delta-G solvation = -20.479134 kcal Electronic energy + Delta-G solvation = -28262.673241 eV Core-core repulsion = 24539.439568 eV Total energy + Delta-G solvation = -3723.233673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.67207 -39.26418 -37.68656 -36.55649 -35.07135 -32.71655 -32.48407 -31.22851 -30.40448 -29.26571 -28.16830 -26.10104 -25.36024 -23.43065 -22.81392 -21.74272 -21.25837 -20.32336 -18.84455 -17.99221 -17.38348 -16.48642 -16.43699 -15.84925 -15.49234 -15.25855 -14.66456 -14.53041 -14.39083 -14.09757 -13.89028 -13.85455 -13.48548 -13.06572 -12.95274 -12.61473 -12.60456 -12.39124 -12.33131 -12.22747 -11.95112 -11.89506 -11.41301 -11.25333 -11.14082 -10.83782 -10.82849 -10.72717 -10.44963 -10.39685 -10.19759 -9.63305 -9.15698 -8.93972 -8.82655 -8.39405 -8.29224 -7.52222 -6.50175 -4.16043 1.68225 2.14390 3.20897 3.22645 3.25696 3.36584 3.51540 4.24603 4.27709 4.35463 4.55928 4.59052 4.69934 4.88532 5.02017 5.04130 5.09488 5.14842 5.22248 5.30891 5.35029 5.36955 5.47314 5.51847 5.59735 5.63210 5.70747 5.78986 5.85077 5.94151 6.03370 6.04379 6.08978 6.11407 6.17694 6.34378 6.35549 6.52158 6.83269 6.88556 6.92143 6.99908 7.13365 7.20148 7.44939 7.63354 7.76533 7.92150 8.71765 8.84797 9.45426 10.56059 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014916 B = 0.004822 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.723872 B = 5805.140228 C = 7096.597012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.577 3.423 4 O -0.522 6.522 5 C -0.213 4.213 6 C -0.043 4.043 7 C -0.215 4.215 8 C -0.057 4.057 9 C -0.223 4.223 10 C 0.195 3.805 11 O -0.191 6.191 12 C -0.392 4.392 13 H 0.109 0.891 14 C 0.071 3.929 15 N -0.871 5.871 16 Si 0.894 3.106 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.246 1.246 20 C 0.151 3.849 21 C -0.124 4.124 22 C -0.138 4.138 23 C 0.093 3.907 24 N -0.846 5.846 25 C -0.146 4.146 26 C -0.133 4.133 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.138 0.862 34 H 0.282 0.718 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.339 0.661 42 H 0.338 0.662 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.597 -13.187 12.548 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.348 5.348 3 C 0.367 3.633 4 O -0.398 6.398 5 C -0.218 4.218 6 C -0.062 4.062 7 C -0.234 4.234 8 C -0.075 4.075 9 C -0.242 4.242 10 C 0.139 3.861 11 O -0.093 6.093 12 C -0.467 4.467 13 H 0.126 0.874 14 C -0.134 4.134 15 N -0.507 5.507 16 Si 0.719 3.281 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.169 1.169 20 C 0.048 3.952 21 C -0.162 4.162 22 C -0.175 4.175 23 C -0.019 4.019 24 N -0.373 5.373 25 C -0.186 4.186 26 C -0.172 4.172 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.156 0.844 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -8.010 -13.995 11.929 20.058 hybrid contribution 0.842 0.536 -0.152 1.010 sum -7.168 -13.459 11.777 19.267 Atomic orbital electron populations 1.22073 0.80422 1.03166 1.00949 1.47785 1.06415 1.05201 1.75414 1.18182 0.86886 0.83007 0.75218 1.90743 1.14055 1.87026 1.47959 1.18760 1.07524 0.95045 1.00471 1.20651 0.93367 0.96937 0.95226 1.20542 1.05613 0.95170 1.02027 1.20941 0.95683 0.97796 0.93079 1.21264 1.01889 0.99099 1.01913 1.18966 0.87705 0.91912 0.87479 1.83619 1.52720 1.38980 1.34027 1.20819 1.33329 0.88867 1.03704 0.87397 1.24446 0.95864 0.98983 0.94076 1.69618 1.37305 1.30382 1.13410 0.86309 0.78654 0.83061 0.80117 1.19944 1.20593 1.16926 1.20919 0.92967 0.82829 0.98461 1.21802 0.98105 0.97899 0.98362 1.22171 0.98182 1.04208 0.92984 1.21455 0.92704 0.97653 0.90074 1.58991 1.28006 1.46107 1.04241 1.22300 0.98609 0.99634 0.98019 1.21864 0.98520 1.03134 0.93653 0.92719 0.91166 0.90421 0.86913 0.87016 0.86851 0.84441 0.90828 0.90856 0.90513 0.90845 0.91362 0.89346 0.90643 0.84920 0.84975 0.91934 0.92547 0.91446 0.89692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.90 7.07 59.85 0.42 1.33 16 2 N -0.61 -9.29 2.25 -175.16 -0.39 -9.69 16 3 C 0.58 11.57 6.45 -12.47 -0.08 11.49 16 4 O -0.52 -12.59 15.00 1.86 0.03 -12.56 16 5 C -0.21 -4.27 4.56 -104.81 -0.48 -4.74 16 6 C -0.04 -0.69 8.32 -39.20 -0.33 -1.02 16 7 C -0.21 -3.27 10.03 -39.61 -0.40 -3.67 16 8 C -0.06 -0.95 10.03 -39.54 -0.40 -1.35 16 9 C -0.22 -4.63 9.13 -39.44 -0.36 -4.99 16 10 C 0.20 4.53 6.65 -38.60 -0.26 4.28 16 11 O -0.19 -5.19 7.78 -2.63 -0.02 -5.21 16 12 C -0.39 -11.12 9.90 30.90 0.31 -10.81 16 13 H 0.11 3.07 5.52 -52.49 -0.29 2.78 16 14 C 0.07 2.03 5.49 -17.52 -0.10 1.93 16 15 N -0.87 -25.15 13.96 55.48 0.77 -24.37 16 16 Si 0.89 22.53 28.62 -169.99 -4.86 17.67 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.25 -6.60 7.11 56.52 0.40 -6.20 16 20 C 0.15 2.03 2.91 -67.93 -0.20 1.83 16 21 C -0.12 -1.19 4.91 -26.73 -0.13 -1.33 16 22 C -0.14 -1.23 4.81 -26.73 -0.13 -1.36 16 23 C 0.09 0.84 3.25 -67.71 -0.22 0.62 16 24 N -0.85 -6.96 9.25 -4.67 -0.04 -7.00 16 25 C -0.15 -1.59 5.33 -26.73 -0.14 -1.73 16 26 C -0.13 -1.72 5.22 -26.73 -0.14 -1.86 16 27 H 0.05 0.55 5.76 -51.93 -0.30 0.25 16 28 H 0.07 0.94 7.13 -51.93 -0.37 0.57 16 29 H 0.08 0.75 4.96 -51.93 -0.26 0.49 16 30 H 0.11 1.48 7.16 -52.49 -0.38 1.10 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.14 2.99 5.71 -52.49 -0.30 2.69 16 34 H 0.28 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.68 6.88 -51.93 -0.36 0.32 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.79 3.69 -51.93 -0.19 0.60 16 40 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.34 2.44 9.04 -39.29 -0.36 2.09 16 42 H 0.34 2.58 8.98 -39.29 -0.35 2.22 16 43 H 0.06 0.76 7.60 -51.92 -0.39 0.37 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 1.40 6.27 -51.93 -0.33 1.08 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -32.16 354.21 -8.19 -40.35 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.39 Total: 6.84 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.62 Total: -11.37 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.34 Total: -41.06 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.01 Total: -17.77 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.86 Total: 17.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.16 -8.19 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578391609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.872 kcal (2) G-P(sol) polarization free energy of solvation -32.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds