Wall clock time and date at job start Tue Mar 31 2020 12:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39953 * 125.86004 * 2 1 4 4 C 1.30598 * 108.95931 * 179.97438 * 3 2 1 5 5 C 1.40828 * 108.26721 * 0.02562 * 4 3 2 6 6 C 1.48350 * 126.36570 * 179.97438 * 5 4 3 7 7 N 1.33715 * 126.31010 * 179.97438 * 6 5 4 8 8 N 1.28566 * 109.84725 * 179.97438 * 7 6 5 9 9 N 1.28919 * 109.73176 * 0.02562 * 8 7 6 10 10 H 0.97000 * 126.42662 * 180.02562 * 9 8 7 11 11 N 1.32023 * 126.31582 * 359.68848 * 6 5 4 12 12 C 1.35157 * 125.86377 * 179.97438 * 2 1 3 13 13 N 1.38817 * 126.38221 * 359.97438 * 12 2 1 14 14 C 1.46900 * 111.00219 * 352.79495 * 13 12 2 15 15 C 1.53047 * 109.45680 * 279.76536 * 14 13 12 16 16 C 1.53189 * 109.31090 * 178.61356 * 15 14 13 17 17 N 1.46924 * 108.77520 * 54.63687 * 16 15 14 18 18 C 1.36940 * 120.63228 * 126.37104 * 17 16 15 19 19 H 1.07996 * 119.99962 * 215.53640 * 18 17 16 20 20 C 1.38816 * 119.99634 * 35.53261 * 18 17 16 21 21 N 1.31617 * 120.00299 * 356.19250 * 20 18 17 22 22 Si 1.86799 * 119.99699 * 176.18907 * 20 18 17 23 23 H 1.48508 * 109.47213 * 60.00235 * 22 20 18 24 24 H 1.48499 * 109.47248 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47459 * 300.00415 * 22 20 18 26 26 C 1.46925 * 118.73740 * 306.38924 * 17 16 15 27 27 C 1.53045 * 109.46177 * 159.69948 * 14 13 12 28 28 H 1.08998 * 109.46818 * 105.24750 * 1 2 3 29 29 H 1.09005 * 109.46686 * 225.24392 * 1 2 3 30 30 H 1.09000 * 109.47035 * 345.23815 * 1 2 3 31 31 H 1.07998 * 125.86948 * 179.97438 * 4 3 2 32 32 H 1.00904 * 111.00098 * 116.74647 * 13 12 2 33 33 H 1.08996 * 109.45748 * 39.72565 * 14 13 12 34 34 H 1.08994 * 109.49569 * 298.56540 * 15 14 13 35 35 H 1.08996 * 109.49418 * 58.66440 * 15 14 13 36 36 H 1.09001 * 109.58394 * 294.84908 * 16 15 14 37 37 H 1.08994 * 109.58615 * 174.42472 * 16 15 14 38 38 H 0.96997 * 119.99987 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.58902 * 293.81959 * 26 17 16 40 40 H 1.09003 * 109.70403 * 173.47280 * 26 17 16 41 41 H 1.08994 * 109.49467 * 301.33684 * 27 14 13 42 42 H 1.08999 * 109.49767 * 61.40050 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2849 1.1342 0.0000 4 6 3.5345 0.7546 0.0006 5 6 3.5681 -0.6533 0.0003 6 6 4.7833 -1.5042 0.0003 7 7 4.8139 -2.8410 0.0005 8 7 6.0329 -3.2497 -0.0002 9 7 6.8313 -2.2375 -0.0004 10 1 7.8008 -2.2687 -0.0012 11 7 6.0339 -1.0812 -0.0054 12 6 2.2569 -1.0953 0.0005 13 7 1.8336 -2.4174 0.0016 14 6 0.3773 -2.5038 0.1742 15 6 0.0291 -2.3430 1.6558 16 6 -1.4921 -2.3990 1.8277 17 7 -1.9910 -3.6411 1.2219 18 6 -2.7700 -4.5055 1.9438 19 1 -2.6752 -5.5709 1.7946 20 6 -3.6814 -4.0123 2.8674 21 7 -3.7445 -2.7191 3.1037 22 14 -4.8185 -5.1842 3.7747 23 1 -4.0091 -6.1559 4.5532 24 1 -5.6889 -4.4134 4.6986 25 1 -5.6610 -5.9150 2.7943 26 6 -1.6379 -3.9382 -0.1730 27 6 -0.1151 -3.8651 -0.3225 28 1 -0.3633 -0.2703 -0.9915 29 1 -0.3633 -0.7236 0.7298 30 1 -0.3633 0.9937 0.2619 31 1 4.3944 1.4080 0.0003 32 1 2.1268 -2.8917 -0.8394 33 1 -0.1039 -1.7120 -0.3998 34 1 0.4897 -3.1488 2.2272 35 1 0.4007 -1.3833 2.0147 36 1 -1.9476 -1.5419 1.3317 37 1 -1.7406 -2.3844 2.8888 38 1 -4.3817 -2.3745 3.7488 39 1 -2.1054 -3.2067 -0.8320 40 1 -1.9831 -4.9386 -0.4344 41 1 0.1539 -3.9886 -1.3715 42 1 0.3473 -4.6566 0.2673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592598116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:22 Heat of formation + Delta-G solvation = 268.402978 kcal Electronic energy + Delta-G solvation = -27172.654938 eV Core-core repulsion = 23422.993292 eV Total energy + Delta-G solvation = -3749.661646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.05510 -41.58815 -38.49856 -35.39030 -34.24036 -32.98126 -32.45546 -32.41332 -30.44370 -29.91209 -28.21346 -26.84449 -24.77570 -24.49080 -23.15928 -22.35475 -21.97523 -20.60316 -20.32695 -19.25468 -18.59764 -17.15151 -16.75054 -16.48955 -16.07041 -15.21529 -15.19710 -14.81550 -14.58675 -14.14123 -13.87169 -13.76659 -13.55781 -13.19184 -12.83412 -12.72735 -12.41551 -12.17776 -11.71435 -11.52415 -11.31771 -11.11159 -10.93819 -10.89929 -10.87042 -10.77699 -10.71482 -10.40720 -10.38710 -10.04186 -9.92387 -9.74183 -9.63253 -8.78098 -8.53115 -7.87593 -6.67131 -5.87655 -3.40831 0.88995 1.66495 2.09514 2.14432 2.42975 3.16515 3.34405 3.39875 3.40720 3.78024 3.92775 4.27509 4.41667 4.64462 4.99719 5.08423 5.13996 5.22489 5.31784 5.39111 5.41367 5.54495 5.60239 5.62707 5.70018 5.76038 5.95629 6.07169 6.14995 6.28020 6.42172 6.47867 6.52262 6.52932 6.59122 6.66999 6.84834 7.01512 7.27761 7.31319 7.63905 7.68298 7.72081 8.24769 8.43943 9.15199 9.73368 10.31911 11.19109 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.003353 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.993545 B = 8348.274846 C = 9079.794914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.379 5.379 3 N -0.299 5.299 4 C 0.106 3.894 5 C -0.225 4.225 6 C 0.311 3.689 7 N -0.291 5.291 8 N 0.002 4.998 9 N -0.310 5.310 10 H 0.465 0.535 11 N -0.313 5.313 12 C 0.349 3.651 13 N -0.579 5.579 14 C 0.044 3.956 15 C -0.141 4.141 16 C 0.166 3.834 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.064 0.936 20 C 0.011 3.989 21 N -0.906 5.906 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.148 3.852 27 C -0.133 4.133 28 H 0.078 0.922 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.190 0.810 32 H 0.373 0.627 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.106 0.894 38 H 0.256 0.744 39 H 0.018 0.982 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 4.435 -8.442 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.164 5.164 3 N -0.119 5.119 4 C -0.084 4.084 5 C -0.244 4.244 6 C 0.031 3.969 7 N -0.169 5.169 8 N 0.005 4.995 9 N -0.156 5.156 10 H 0.318 0.682 11 N -0.158 5.158 12 C 0.118 3.882 13 N -0.213 5.213 14 C -0.063 4.063 15 C -0.181 4.181 16 C 0.039 3.961 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.082 0.918 20 C -0.188 4.188 21 N -0.550 5.550 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.208 1.208 26 C 0.021 3.979 27 C -0.173 4.173 28 H 0.096 0.904 29 H 0.152 0.848 30 H 0.110 0.890 31 H 0.206 0.794 32 H 0.204 0.796 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.036 0.964 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.933 4.846 -7.702 17.487 hybrid contribution 0.261 -0.632 -0.175 0.706 sum 15.194 4.215 -7.878 17.626 Atomic orbital electron populations 1.23216 0.73472 1.06874 1.04755 1.48721 1.06932 1.02989 1.57764 1.77278 1.01160 1.06971 1.26477 1.23646 0.95311 0.92680 0.96773 1.16510 0.86079 0.91472 1.30307 1.22468 0.90803 0.88897 0.94736 1.75593 1.09905 1.10332 1.21102 1.78331 0.95959 1.15786 1.09387 1.50946 1.12006 1.01048 1.51581 0.68173 1.78847 1.01969 1.06712 1.28224 1.19770 0.89831 0.85130 0.93519 1.57525 1.16009 1.06005 1.41719 1.22892 0.83271 1.00294 0.99822 1.22499 1.01860 1.00686 0.93054 1.21059 0.85605 0.87496 1.01893 1.43956 1.58279 1.22522 1.06575 1.19113 1.12557 0.88721 1.18232 0.91786 1.25306 0.97330 0.95717 1.00428 1.69838 1.37340 1.11350 1.36426 0.86338 0.80905 0.80147 0.79166 1.20853 1.21559 1.20802 1.20884 0.90320 0.99049 0.87630 1.22233 1.00117 0.95748 0.99167 0.90427 0.84773 0.88957 0.79355 0.79556 0.90365 0.90950 0.93204 0.96561 0.87618 0.93336 0.96429 0.92159 0.92928 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 9.00 59.85 0.54 1.28 16 2 N -0.38 -5.49 3.91 -70.61 -0.28 -5.77 16 3 N -0.30 -4.37 12.51 30.79 0.39 -3.98 16 4 C 0.11 1.38 11.99 -17.10 -0.20 1.18 16 5 C -0.22 -3.22 6.16 -104.71 -0.64 -3.86 16 6 C 0.31 4.40 8.15 -156.44 -1.27 3.13 16 7 N -0.29 -4.25 11.95 32.11 0.38 -3.86 16 8 N 0.00 0.02 13.42 60.35 0.81 0.83 16 9 N -0.31 -3.01 8.44 60.35 0.51 -2.50 16 10 H 0.46 2.26 8.96 -331.92 -2.98 -0.72 16 11 N -0.31 -3.87 12.90 32.13 0.41 -3.45 16 12 C 0.35 5.13 6.95 -153.08 -1.06 4.07 16 13 N -0.58 -8.33 6.01 -53.22 -0.32 -8.65 16 14 C 0.04 0.66 1.92 -67.66 -0.13 0.53 16 15 C -0.14 -2.56 4.50 -26.61 -0.12 -2.68 16 16 C 0.17 3.60 5.02 -3.71 -0.02 3.58 16 17 N -0.59 -13.66 3.00 -172.33 -0.52 -14.18 16 18 C -0.26 -6.68 9.55 -15.06 -0.14 -6.82 16 19 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 20 C 0.01 0.29 5.31 -17.43 -0.09 0.20 16 21 N -0.91 -24.76 10.64 55.49 0.59 -24.17 16 22 Si 0.91 20.93 29.55 -169.99 -5.02 15.90 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.15 2.79 6.51 -3.71 -0.02 2.77 16 27 C -0.13 -2.07 5.41 -26.61 -0.14 -2.21 16 28 H 0.08 0.90 7.20 -51.93 -0.37 0.52 16 29 H 0.13 1.99 1.64 -51.93 -0.09 1.90 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 32 H 0.37 4.87 8.43 -39.29 -0.33 4.54 16 33 H 0.08 1.13 3.48 -57.43 -0.20 0.93 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.05 0.88 6.48 -51.93 -0.34 0.54 16 36 H 0.02 0.36 7.12 -51.93 -0.37 -0.01 16 37 H 0.11 2.68 5.94 -51.93 -0.31 2.37 16 38 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.06 1.13 7.94 -51.93 -0.41 0.71 16 41 H 0.05 0.68 8.10 -51.93 -0.42 0.25 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 336.18 15.07 5.07 5.07 Total: -1.00 -30.65 336.18 -8.77 -39.42 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.47 Total: 4.18 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -3.32 Total: 1.17 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: 1.98 Total: -65.74 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.65 -8.77 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592598116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 307.827 kcal (2) G-P(sol) polarization free energy of solvation -30.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 277.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 268.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds