Wall clock time and date at job start Tue Mar 31 2020 12:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39953 * 125.86004 * 2 1 4 4 C 1.30598 * 108.95931 * 179.97438 * 3 2 1 5 5 C 1.40828 * 108.26721 * 0.02562 * 4 3 2 6 6 C 1.48350 * 126.36570 * 179.97438 * 5 4 3 7 7 N 1.33715 * 126.31010 * 179.97438 * 6 5 4 8 8 N 1.28566 * 109.84725 * 179.97438 * 7 6 5 9 9 N 1.28919 * 109.73176 * 0.02562 * 8 7 6 10 10 H 0.97000 * 126.42662 * 180.02562 * 9 8 7 11 11 N 1.32023 * 126.31582 * 359.68848 * 6 5 4 12 12 C 1.35157 * 125.86377 * 179.97438 * 2 1 3 13 13 N 1.38817 * 126.38221 * 359.97438 * 12 2 1 14 14 C 1.46900 * 111.00219 * 352.79495 * 13 12 2 15 15 C 1.53047 * 109.45680 * 279.76536 * 14 13 12 16 16 C 1.53189 * 109.31090 * 178.61356 * 15 14 13 17 17 N 1.46924 * 108.77520 * 54.63687 * 16 15 14 18 18 C 1.36940 * 120.63228 * 126.37104 * 17 16 15 19 19 H 1.07996 * 119.99962 * 215.53640 * 18 17 16 20 20 C 1.38816 * 119.99634 * 35.53261 * 18 17 16 21 21 N 1.31617 * 120.00299 * 356.19250 * 20 18 17 22 22 Si 1.86799 * 119.99699 * 176.18907 * 20 18 17 23 23 H 1.48508 * 109.47213 * 60.00235 * 22 20 18 24 24 H 1.48499 * 109.47248 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47459 * 300.00415 * 22 20 18 26 26 C 1.46925 * 118.73740 * 306.38924 * 17 16 15 27 27 C 1.53045 * 109.46177 * 159.69948 * 14 13 12 28 28 H 1.08998 * 109.46818 * 105.24750 * 1 2 3 29 29 H 1.09005 * 109.46686 * 225.24392 * 1 2 3 30 30 H 1.09000 * 109.47035 * 345.23815 * 1 2 3 31 31 H 1.07998 * 125.86948 * 179.97438 * 4 3 2 32 32 H 1.00904 * 111.00098 * 116.74647 * 13 12 2 33 33 H 1.08996 * 109.45748 * 39.72565 * 14 13 12 34 34 H 1.08994 * 109.49569 * 298.56540 * 15 14 13 35 35 H 1.08996 * 109.49418 * 58.66440 * 15 14 13 36 36 H 1.09001 * 109.58394 * 294.84908 * 16 15 14 37 37 H 1.08994 * 109.58615 * 174.42472 * 16 15 14 38 38 H 0.96997 * 119.99987 * 179.97438 * 21 20 18 39 39 H 1.08995 * 109.58902 * 293.81959 * 26 17 16 40 40 H 1.09003 * 109.70403 * 173.47280 * 26 17 16 41 41 H 1.08994 * 109.49467 * 301.33684 * 27 14 13 42 42 H 1.08999 * 109.49767 * 61.40050 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2849 1.1342 0.0000 4 6 3.5345 0.7546 0.0006 5 6 3.5681 -0.6533 0.0003 6 6 4.7833 -1.5042 0.0003 7 7 4.8139 -2.8410 0.0005 8 7 6.0329 -3.2497 -0.0002 9 7 6.8313 -2.2375 -0.0004 10 1 7.8008 -2.2687 -0.0012 11 7 6.0339 -1.0812 -0.0054 12 6 2.2569 -1.0953 0.0005 13 7 1.8336 -2.4174 0.0016 14 6 0.3773 -2.5038 0.1742 15 6 0.0291 -2.3430 1.6558 16 6 -1.4921 -2.3990 1.8277 17 7 -1.9910 -3.6411 1.2219 18 6 -2.7700 -4.5055 1.9438 19 1 -2.6752 -5.5709 1.7946 20 6 -3.6814 -4.0123 2.8674 21 7 -3.7445 -2.7191 3.1037 22 14 -4.8185 -5.1842 3.7747 23 1 -4.0091 -6.1559 4.5532 24 1 -5.6889 -4.4134 4.6986 25 1 -5.6610 -5.9150 2.7943 26 6 -1.6379 -3.9382 -0.1730 27 6 -0.1151 -3.8651 -0.3225 28 1 -0.3633 -0.2703 -0.9915 29 1 -0.3633 -0.7236 0.7298 30 1 -0.3633 0.9937 0.2619 31 1 4.3944 1.4080 0.0003 32 1 2.1268 -2.8917 -0.8394 33 1 -0.1039 -1.7120 -0.3998 34 1 0.4897 -3.1488 2.2272 35 1 0.4007 -1.3833 2.0147 36 1 -1.9476 -1.5419 1.3317 37 1 -1.7406 -2.3844 2.8888 38 1 -4.3817 -2.3745 3.7488 39 1 -2.1054 -3.2067 -0.8320 40 1 -1.9831 -4.9386 -0.4344 41 1 0.1539 -3.9886 -1.3715 42 1 0.3473 -4.6566 0.2673 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592598116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:21 Heat of formation + Delta-G solvation = 246.894456 kcal Electronic energy + Delta-G solvation = -27173.587617 eV Core-core repulsion = 23422.993292 eV Total energy + Delta-G solvation = -3750.594325 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.02097 -42.67775 -39.86053 -36.89129 -35.25394 -34.18806 -33.92367 -33.45237 -31.95755 -31.44629 -29.43099 -28.00989 -26.48922 -25.46382 -24.28750 -23.75098 -23.49091 -21.71733 -21.42792 -20.69465 -19.58118 -18.80806 -17.96133 -17.52580 -17.20299 -16.79771 -16.35422 -16.21687 -15.93801 -15.42664 -15.13496 -15.03575 -14.77533 -14.72738 -14.28583 -13.88242 -13.82993 -13.26406 -13.14982 -12.93401 -12.73948 -12.64717 -12.60302 -12.22879 -12.11457 -12.01240 -11.93100 -11.78801 -11.77786 -11.67546 -11.43234 -11.23970 -10.90995 -10.49474 -9.84677 -8.96490 -8.53626 -7.85515 -5.40190 -0.06771 0.60867 1.11745 1.19476 1.49923 1.50241 1.51781 1.56817 2.12989 2.51703 2.62500 2.95706 3.27453 3.31923 3.62350 3.67380 3.81325 3.88754 4.07718 4.20043 4.25148 4.38439 4.44721 4.53321 4.57584 4.66841 4.67418 4.71303 4.83398 4.88767 4.96075 5.02917 5.17355 5.29868 5.42569 5.51732 5.59388 5.67231 5.81149 5.85918 5.94263 6.19870 6.48693 6.62811 7.20703 7.27643 7.88061 8.40131 9.18292 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.020154 B = 0.003353 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.993545 B = 8348.274846 C = 9079.794914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.384 5.384 3 N -0.317 5.317 4 C 0.112 3.888 5 C -0.231 4.231 6 C 0.299 3.701 7 N -0.318 5.318 8 N -0.003 5.003 9 N -0.280 5.280 10 H 0.485 0.515 11 N -0.311 5.311 12 C 0.338 3.662 13 N -0.579 5.579 14 C 0.056 3.944 15 C -0.121 4.121 16 C 0.176 3.824 17 N -0.610 5.610 18 C -0.266 4.266 19 H 0.063 0.937 20 C -0.040 4.040 21 N -0.930 5.930 22 Si 0.964 3.036 23 H -0.280 1.280 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.145 3.855 27 C -0.121 4.121 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.217 0.783 32 H 0.383 0.617 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.014 0.986 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.028 0.972 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.192 4.486 -9.857 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.169 5.169 3 N -0.137 5.137 4 C -0.077 4.077 5 C -0.250 4.250 6 C 0.018 3.982 7 N -0.196 5.196 8 N 0.001 4.999 9 N -0.131 5.131 10 H 0.343 0.657 11 N -0.157 5.157 12 C 0.106 3.894 13 N -0.213 5.213 14 C -0.051 4.051 15 C -0.161 4.161 16 C 0.050 3.950 17 N -0.334 5.334 18 C -0.396 4.396 19 H 0.080 0.920 20 C -0.236 4.236 21 N -0.575 5.575 22 Si 0.792 3.208 23 H -0.206 1.206 24 H -0.221 1.221 25 H -0.202 1.202 26 C 0.019 3.981 27 C -0.160 4.160 28 H 0.115 0.885 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.233 0.767 32 H 0.215 0.785 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.032 0.968 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.078 0.922 41 H 0.108 0.892 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.576 4.875 -9.146 19.549 hybrid contribution -0.073 -0.638 0.243 0.687 sum 16.503 4.237 -8.903 19.224 Atomic orbital electron populations 1.23195 0.73108 1.06931 1.05186 1.48809 1.07223 1.02947 1.57921 1.77261 1.01806 1.07256 1.27348 1.24090 0.95611 0.92613 0.95401 1.16696 0.86097 0.92077 1.30134 1.22486 0.91215 0.88887 0.95587 1.75568 1.10871 1.10766 1.22385 1.78277 0.95834 1.16143 1.09685 1.50961 1.12913 0.99970 1.49230 0.65684 1.78797 1.01585 1.07427 1.27848 1.19863 0.90251 0.85116 0.94143 1.57370 1.15068 1.06329 1.42551 1.22674 0.84231 1.00651 0.97544 1.22164 0.98824 0.99848 0.95265 1.20754 0.87849 0.87127 0.99289 1.44199 1.58467 1.22358 1.08386 1.19400 1.12571 0.89250 1.18418 0.91968 1.25960 0.98853 0.97034 1.01743 1.70018 1.37785 1.12644 1.37086 0.85415 0.79089 0.78326 0.78001 1.20630 1.22059 1.20168 1.21033 0.92552 0.99214 0.85322 1.22069 0.97366 0.95337 1.01273 0.88528 0.86683 0.88076 0.76660 0.78493 0.88866 0.93356 0.92926 0.96848 0.91733 0.94007 0.95396 0.92245 0.89153 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.37 9.00 127.77 1.15 2.52 16 2 N -0.38 -10.55 3.91 -377.32 -1.47 -12.03 16 3 N -0.32 -8.73 12.51 -56.51 -0.71 -9.43 16 4 C 0.11 2.71 11.99 85.51 1.03 3.73 16 5 C -0.23 -6.23 6.16 -19.92 -0.12 -6.35 16 6 C 0.30 7.92 8.15 137.37 1.12 9.04 16 7 N -0.32 -8.80 11.95 -52.31 -0.63 -9.42 16 8 N 0.00 -0.07 13.42 37.02 0.50 0.42 16 9 N -0.28 -4.74 8.44 37.02 0.31 -4.43 16 10 H 0.48 3.34 8.96 -340.35 -3.05 0.29 16 11 N -0.31 -6.96 12.90 -52.27 -0.67 -7.64 16 12 C 0.34 9.42 6.95 132.10 0.92 10.34 16 13 N -0.58 -15.79 6.01 -322.28 -1.94 -17.73 16 14 C 0.06 1.62 1.92 44.95 0.09 1.71 16 15 C -0.12 -4.43 4.50 30.67 0.14 -4.29 16 16 C 0.18 7.85 5.02 86.36 0.43 8.29 16 17 N -0.61 -28.54 3.00 -699.13 -2.10 -30.64 16 18 C -0.27 -14.05 9.55 84.03 0.80 -13.24 16 19 H 0.06 3.23 7.83 -2.91 -0.02 3.21 16 20 C -0.04 -2.15 5.31 84.86 0.45 -1.70 16 21 N -0.93 -52.32 10.64 21.65 0.23 -52.09 16 22 Si 0.96 43.67 29.55 68.60 2.03 45.69 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.14 5.30 6.51 86.36 0.56 5.86 16 27 C -0.12 -3.54 5.41 30.67 0.17 -3.38 16 28 H 0.10 2.02 7.20 -2.39 -0.02 2.01 16 29 H 0.12 3.34 1.64 -2.38 0.00 3.34 16 30 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.22 3.74 8.06 -2.91 -0.02 3.71 16 32 H 0.38 9.20 8.43 -89.69 -0.76 8.44 16 33 H 0.09 2.50 3.48 -7.56 -0.03 2.48 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.88 6.48 -2.39 -0.02 1.86 16 36 H 0.01 0.60 7.12 -2.39 -0.02 0.59 16 37 H 0.06 3.43 5.94 -2.39 -0.01 3.41 16 38 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 2.16 7.94 -2.39 -0.02 2.14 16 41 H 0.09 2.01 8.10 -2.39 -0.02 1.99 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.64 336.18 -0.43 -67.07 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -2.71 Total: 17.70 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 6.73 Total: 12.52 kcal Atomic # 7 Polarization: -136.51 SS G_CDS: -6.47 Total: -142.98 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -66.64 -0.43 -67.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592598116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 313.964 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 247.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 246.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds