Wall clock time and date at job start Tue Mar 31 2020 12:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42897 * 109.47539 * 2 1 4 4 C 1.42901 * 114.00358 * 179.97438 * 3 2 1 5 5 H 1.09006 * 112.86938 * 21.77558 * 4 3 2 6 6 C 1.53889 * 113.64263 * 250.49830 * 4 3 2 7 7 C 1.53878 * 87.18069 * 220.48638 * 6 4 3 8 8 H 1.09002 * 113.64508 * 139.59429 * 7 6 4 9 9 N 1.46499 * 113.64131 * 270.49645 * 7 6 4 10 10 C 1.38825 * 120.00169 * 255.49066 * 9 7 6 11 11 C 1.39792 * 119.58302 * 359.73072 * 10 9 7 12 12 C 1.38600 * 119.49019 * 179.76462 * 11 10 9 13 13 C 1.38383 * 118.67833 * 0.49657 * 12 11 10 14 14 C 1.40558 * 119.15328 * 359.75110 * 13 12 11 15 15 C 1.41311 * 119.78690 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00249 * 359.97438 * 15 14 13 17 17 C 1.40025 * 120.00319 * 179.97438 * 15 14 13 18 18 N 1.30744 * 119.99670 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47265 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46926 * 120.00447 * 19 17 15 22 22 H 1.48495 * 109.47298 * 240.00019 * 19 17 15 23 23 N 1.31960 * 119.58311 * 179.97438 * 10 9 7 24 24 C 1.53191 * 113.64413 * 153.17285 * 4 3 2 25 25 C 1.53853 * 114.62116 * 23.54774 * 24 4 3 26 26 C 1.55438 * 102.04663 * 208.55222 * 25 24 4 27 27 C 1.54998 * 101.01697 * 33.66929 * 26 25 24 28 28 O 1.42625 * 115.41376 * 256.70944 * 24 4 3 29 29 H 1.09001 * 109.46928 * 300.00176 * 1 2 3 30 30 H 1.09004 * 109.46729 * 59.99556 * 1 2 3 31 31 H 1.09004 * 109.47617 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47440 * 239.99798 * 2 1 3 33 33 H 1.09001 * 109.47363 * 120.00057 * 2 1 3 34 34 H 1.09002 * 113.60057 * 105.91246 * 6 4 3 35 35 H 1.08996 * 113.59887 * 335.05901 * 6 4 3 36 36 H 0.97004 * 120.00243 * 75.77562 * 9 7 6 37 37 H 1.08004 * 120.25660 * 359.97438 * 11 10 9 38 38 H 1.07999 * 120.65739 * 180.24420 * 12 11 10 39 39 H 1.08000 * 120.42401 * 179.76951 * 13 12 11 40 40 H 0.96999 * 120.00322 * 180.02562 * 18 17 15 41 41 H 1.09004 * 110.91485 * 326.73672 * 25 24 4 42 42 H 1.08995 * 110.91985 * 90.36376 * 25 24 4 43 43 H 1.09002 * 111.10735 * 275.73148 * 26 25 24 44 44 H 1.09001 * 111.11380 * 151.60934 * 26 25 24 45 45 H 1.08997 * 110.30447 * 204.94916 * 27 26 25 46 46 H 1.08994 * 110.30372 * 82.79856 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9270 0.5636 -0.3717 6 6 4.0084 1.9781 1.3296 7 6 4.9859 2.8187 0.4895 8 1 5.1482 3.8225 0.8821 9 7 6.2352 2.1231 0.1709 10 6 7.4039 2.4516 0.8443 11 6 7.3799 3.4517 1.8208 12 6 8.5467 3.7748 2.4953 13 6 9.7101 3.0991 2.1711 14 6 9.6711 2.1071 1.1761 15 6 10.8510 1.4085 0.8347 16 1 11.7789 1.6376 1.3375 17 6 10.8172 0.4190 -0.1555 18 7 9.6940 0.1419 -0.7646 19 14 12.3772 -0.5040 -0.6071 20 1 13.5045 -0.0061 0.2214 21 1 12.1834 -1.9551 -0.3579 22 1 12.6835 -0.2852 -2.0436 23 7 8.5244 1.8194 0.5511 24 6 3.9448 2.7568 -0.6327 25 6 2.9326 3.9156 -0.6317 26 6 3.3652 4.7252 -1.8861 27 6 3.8501 3.5874 -2.8203 28 8 4.4740 2.6265 -1.9507 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 4.4965 1.2057 1.9239 35 1 3.3041 2.5762 1.9078 36 1 6.2467 1.4357 -0.5134 37 1 6.4584 3.9662 2.0503 38 1 8.5488 4.5415 3.2560 39 1 10.6361 3.3309 2.6763 40 1 9.6705 -0.5438 -1.4502 41 1 1.9142 3.5428 -0.7414 42 1 3.0302 4.5168 0.2722 43 1 4.1779 5.4118 -1.6491 44 1 2.5190 5.2568 -2.3213 45 1 4.5729 3.9713 -3.5402 46 1 3.0034 3.1359 -3.3374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647145936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:12 Heat of formation + Delta-G solvation = -24.639252 kcal Electronic energy + Delta-G solvation = -27330.277054 eV Core-core repulsion = 23606.862984 eV Total energy + Delta-G solvation = -3723.414069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.77798 -38.11310 -37.72305 -36.09878 -33.74195 -32.65042 -31.90312 -30.95656 -30.23064 -28.38979 -27.33032 -25.33865 -24.22639 -22.92048 -22.85054 -21.87073 -21.40326 -20.46837 -18.81692 -17.38478 -17.05767 -16.58698 -16.15520 -15.83524 -15.59644 -15.14867 -14.81342 -14.63788 -14.20482 -13.62937 -13.47924 -13.26673 -13.08267 -12.95410 -12.75550 -12.54789 -12.17237 -12.06835 -11.95815 -11.78868 -11.69355 -11.38747 -11.28133 -11.13372 -11.05419 -10.93527 -10.70453 -10.57384 -10.48927 -10.29810 -9.85158 -9.64633 -9.46786 -9.18246 -8.80418 -7.87386 -7.45702 -6.46071 -6.27837 -4.42913 2.89935 3.14422 3.18820 3.27734 3.32585 3.43464 3.92220 4.02095 4.26273 4.44033 4.56754 4.70748 4.83131 4.87819 4.94931 4.98485 5.07338 5.08607 5.21682 5.28747 5.39193 5.46662 5.68070 5.69921 5.73007 5.75827 5.77985 5.84902 5.92563 6.03623 6.09985 6.12211 6.17564 6.19842 6.30253 6.65276 6.89910 6.93126 6.96882 7.09993 7.27363 7.30397 7.64893 7.86011 7.97061 8.22266 8.41946 8.75416 8.85187 9.17253 10.29485 10.45223 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014393 B = 0.003514 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.895987 B = 7966.009021 C = 8367.402493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.374 6.374 4 C 0.066 3.934 5 H 0.093 0.907 6 C -0.176 4.176 7 C 0.156 3.844 8 H 0.098 0.902 9 N -0.710 5.710 10 C 0.415 3.585 11 C -0.368 4.368 12 C -0.032 4.032 13 C -0.318 4.318 14 C 0.293 3.707 15 C -0.434 4.434 16 H 0.083 0.917 17 C 0.071 3.929 18 N -0.714 5.714 19 Si 0.904 3.096 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.274 1.274 23 N -0.530 5.530 24 C 0.082 3.918 25 C -0.121 4.121 26 C -0.156 4.156 27 C 0.051 3.949 28 O -0.353 6.353 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 2.628 -1.936 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.008 3.992 5 H 0.111 0.889 6 C -0.216 4.216 7 C 0.047 3.953 8 H 0.116 0.884 9 N -0.344 5.344 10 C 0.175 3.825 11 C -0.394 4.394 12 C -0.056 4.056 13 C -0.341 4.341 14 C 0.166 3.834 15 C -0.467 4.467 16 H 0.101 0.899 17 C -0.154 4.154 18 N -0.335 5.335 19 Si 0.728 3.272 20 H -0.185 1.185 21 H -0.200 1.200 22 H -0.200 1.200 23 N -0.251 5.251 24 C 0.040 3.960 25 C -0.158 4.158 26 C -0.194 4.194 27 C -0.026 4.026 28 O -0.271 6.271 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.697 1.982 -2.707 17.030 hybrid contribution 0.624 -0.155 0.215 0.678 sum -16.073 1.826 -2.491 16.367 Atomic orbital electron populations 1.21735 0.94018 1.02054 1.02863 1.22483 0.95225 0.84256 1.00183 1.87856 1.20782 1.26067 1.94611 1.24127 0.80659 0.98310 0.96153 0.88923 1.23960 0.99156 1.01549 0.96897 1.21708 0.83845 0.96706 0.93069 0.88417 1.43639 1.03937 1.43368 1.43443 1.18499 0.86991 0.89202 0.87823 1.20615 0.98405 1.10171 1.10196 1.20583 0.92865 0.96184 0.95971 1.21527 0.97323 1.07000 1.08237 1.18201 0.90341 0.88214 0.86667 1.19608 0.94808 1.15404 1.16839 0.89900 1.26049 0.96978 0.96865 0.95501 1.70165 1.25665 1.22336 1.15377 0.86341 0.82389 0.79472 0.78985 1.18476 1.19992 1.19968 1.68210 0.96546 1.29654 1.30710 1.23978 0.93470 0.94767 0.83773 1.22673 0.99522 0.94753 0.98888 1.23299 1.01758 0.98368 0.95956 1.23387 0.97290 0.88618 0.93280 1.88429 1.63203 1.57194 1.18297 0.91947 0.92061 0.91321 0.93445 0.93353 0.89911 0.88909 0.76401 0.89178 0.89010 0.88774 0.92008 0.88985 0.89862 0.90250 0.90103 0.89861 0.92463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.15 0.38 -0.88 16 2 C 0.06 0.59 6.51 37.15 0.24 0.83 16 3 O -0.37 -4.80 8.94 -35.23 -0.32 -5.12 16 4 C 0.07 0.93 4.00 -26.17 -0.10 0.82 16 5 H 0.09 1.40 7.90 -51.93 -0.41 0.99 16 6 C -0.18 -2.53 7.51 -25.81 -0.19 -2.73 16 7 C 0.16 2.59 3.53 -67.37 -0.24 2.35 16 8 H 0.10 1.62 6.07 -51.93 -0.32 1.30 16 9 N -0.71 -14.86 5.23 -53.36 -0.28 -15.14 16 10 C 0.41 10.33 7.65 -155.32 -1.19 9.14 16 11 C -0.37 -8.59 9.30 -38.87 -0.36 -8.95 16 12 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 13 C -0.32 -8.18 9.83 -38.65 -0.38 -8.56 16 14 C 0.29 8.30 6.55 -85.00 -0.56 7.74 16 15 C -0.43 -11.98 9.14 -37.74 -0.34 -12.32 16 16 H 0.08 2.15 7.85 -52.49 -0.41 1.74 16 17 C 0.07 1.86 5.50 -17.35 -0.10 1.76 16 18 N -0.71 -19.39 11.46 55.55 0.64 -18.75 16 19 Si 0.90 19.07 29.56 -169.99 -5.02 14.04 16 20 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 N -0.53 -14.95 7.89 -10.33 -0.08 -15.03 16 24 C 0.08 1.18 1.51 -89.97 -0.14 1.05 16 25 C -0.12 -1.40 5.97 -24.99 -0.15 -1.55 16 26 C -0.16 -1.67 7.16 -24.38 -0.17 -1.84 16 27 C 0.05 0.63 7.79 38.21 0.30 0.93 16 28 O -0.35 -5.72 10.54 -35.23 -0.37 -6.09 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.40 8.78 8.52 -40.82 -0.35 8.43 16 37 H 0.09 1.86 6.07 -52.48 -0.32 1.54 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.09 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.27 6.64 8.29 -40.82 -0.34 6.30 16 41 H 0.09 1.05 7.03 -51.93 -0.37 0.68 16 42 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -30.79 372.56 -10.43 -41.22 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -7.21 Total: 12.62 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.40 Total: -13.36 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.28 Total: -48.93 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.69 Total: -11.21 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.79 -10.43 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647145936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.581 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds