Wall clock time and date at job start Tue Mar 31 2020 11:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.46969 * 2 1 4 4 C 1.35714 * 117.00195 * 179.97438 * 3 2 1 5 5 C 1.38994 * 119.91227 * 179.97438 * 4 3 2 6 6 C 1.37704 * 120.08618 * 180.02562 * 5 4 3 7 7 C 1.39733 * 119.91074 * 359.97438 * 6 5 4 8 8 C 1.47603 * 120.08727 * 179.97438 * 7 6 5 9 9 O 1.21587 * 119.99850 * 30.47042 * 8 7 6 10 10 N 1.34769 * 120.00367 * 210.47631 * 8 7 6 11 11 C 1.47434 * 125.64583 * 357.37728 * 10 8 7 12 12 C 1.54909 * 104.83092 * 156.14097 * 11 10 8 13 13 C 1.55157 * 101.58293 * 37.01121 * 12 11 10 14 14 C 1.47022 * 125.65188 * 177.69229 * 10 8 7 15 15 H 1.09000 * 109.88298 * 300.20594 * 14 10 8 16 16 C 1.52997 * 109.88375 * 61.21689 * 14 10 8 17 17 N 1.46500 * 109.47415 * 271.32972 * 16 14 10 18 18 C 1.36931 * 120.00045 * 172.50058 * 17 16 14 19 19 H 1.07995 * 120.00350 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99762 * 179.97438 * 18 17 16 21 21 N 1.31622 * 120.00367 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00008 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47364 * 59.99899 * 22 20 18 24 24 H 1.48504 * 109.47041 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47095 * 300.00079 * 22 20 18 26 26 C 1.39726 * 119.82576 * 0.27342 * 7 6 5 27 27 C 1.37704 * 119.91184 * 359.46710 * 26 7 6 28 28 H 1.09003 * 109.46797 * 60.00145 * 1 2 3 29 29 H 1.08996 * 109.46677 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47598 * 300.00097 * 1 2 3 31 31 H 1.09000 * 109.47598 * 239.99902 * 2 1 3 32 32 H 1.09000 * 109.47159 * 119.99470 * 2 1 3 33 33 H 1.08002 * 119.95862 * 0.02562 * 5 4 3 34 34 H 1.07998 * 120.04309 * 180.02562 * 6 5 4 35 35 H 1.09003 * 110.36525 * 274.98057 * 11 10 8 36 36 H 1.09001 * 110.36164 * 37.30166 * 11 10 8 37 37 H 1.08997 * 111.00282 * 278.93573 * 12 11 10 38 38 H 1.08995 * 111.03557 * 155.10049 * 12 11 10 39 39 H 1.09001 * 110.71697 * 206.13210 * 13 12 11 40 40 H 1.08998 * 110.72412 * 82.86043 * 13 12 11 41 41 H 1.09006 * 109.47098 * 31.33019 * 16 14 10 42 42 H 1.09003 * 109.47432 * 151.32911 * 16 14 10 43 43 H 0.97005 * 119.99707 * 352.50643 * 17 16 14 44 44 H 0.96997 * 120.00635 * 180.02562 * 21 20 18 45 45 H 1.08003 * 120.04549 * 179.73124 * 26 7 6 46 46 H 1.07996 * 119.96117 * 180.25671 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5252 0.0005 5 6 3.8810 2.8104 0.0000 6 6 5.2456 2.9951 0.0000 7 6 6.0985 1.8883 0.0011 8 6 7.5618 2.0817 0.0006 9 8 8.0457 3.0617 0.5333 10 7 8.3616 1.1721 -0.5905 11 6 7.9151 -0.0828 -1.2227 12 6 9.0300 -0.4330 -2.2395 13 6 10.3028 0.0123 -1.4720 14 6 9.8244 1.2638 -0.7060 15 1 10.0970 2.1631 -1.2582 16 6 10.4553 1.2977 0.6874 17 7 10.5417 2.6848 1.1507 18 6 10.9314 2.9545 2.4354 19 1 11.1755 2.1447 3.1070 20 6 11.0137 4.2689 2.8743 21 7 10.7167 5.2559 2.0557 22 14 11.5460 4.6369 4.6266 23 1 12.9107 4.0969 4.8532 24 1 11.5520 6.1059 4.8439 25 1 10.5979 4.0004 5.5759 26 6 5.5625 0.5979 -0.0036 27 6 4.1968 0.4216 0.0018 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.2211 3.6654 -0.0004 34 1 5.6560 3.9940 0.0001 35 1 7.8213 -0.8712 -0.4759 36 1 6.9662 0.0685 -1.7372 37 1 8.9106 0.1359 -3.1615 38 1 9.0513 -1.5035 -2.4435 39 1 11.1026 0.2679 -2.1671 40 1 10.6265 -0.7639 -0.7787 41 1 9.8405 0.7213 1.3787 42 1 11.4553 0.8662 0.6441 43 1 10.3227 3.4122 0.5474 44 1 10.7746 6.1743 2.3622 45 1 6.2184 -0.2601 -0.0072 46 1 3.7817 -0.5754 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753601887.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:19 Heat of formation + Delta-G solvation = -15.248323 kcal Electronic energy + Delta-G solvation = -26904.984858 eV Core-core repulsion = 23181.978010 eV Total energy + Delta-G solvation = -3723.006848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53399 -39.65823 -37.66713 -36.58269 -34.24528 -32.48189 -31.63201 -31.17444 -30.91722 -29.53419 -28.57019 -25.10867 -24.47543 -23.72903 -22.44339 -22.13643 -21.40373 -20.75715 -19.03519 -18.32294 -17.30430 -16.53179 -16.41026 -16.31895 -16.00205 -14.87395 -14.54884 -14.45070 -14.20993 -13.88760 -13.60747 -13.42858 -13.39725 -13.33666 -13.06624 -12.88798 -12.75200 -12.50857 -12.32625 -12.02829 -11.93141 -11.61002 -11.50800 -11.18523 -11.06132 -10.96602 -10.73156 -10.64075 -10.56071 -10.42995 -9.87653 -9.46964 -9.15919 -9.09214 -8.64650 -8.27037 -8.12122 -6.58710 -5.47456 -2.73582 1.06967 1.29207 2.93212 3.22089 3.34773 3.58065 3.61691 3.63163 3.94717 4.51005 4.56122 4.59051 4.62138 4.71782 4.79234 4.80847 4.88911 4.97330 5.06262 5.13359 5.25264 5.35894 5.39543 5.41395 5.47100 5.57956 5.62024 5.66653 5.75226 5.83227 5.87728 5.94002 6.02901 6.08537 6.13082 6.19519 6.25316 6.42397 6.51074 6.58728 6.65343 6.87894 7.07136 7.21875 7.89109 7.99600 8.68742 8.83449 9.81717 10.44731 10.80175 11.74942 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012801 B = 0.003544 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.865715 B = 7897.837939 C = 9500.781765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 O -0.315 6.315 4 C 0.143 3.857 5 C -0.159 4.159 6 C -0.024 4.024 7 C -0.151 4.151 8 C 0.553 3.447 9 O -0.464 6.464 10 N -0.614 5.614 11 C 0.096 3.904 12 C -0.134 4.134 13 C -0.124 4.124 14 C 0.131 3.869 15 H 0.076 0.924 16 C 0.150 3.850 17 N -0.715 5.715 18 C -0.232 4.232 19 H 0.062 0.938 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.900 3.100 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.289 1.289 26 C -0.060 4.060 27 C -0.219 4.219 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.390 0.610 44 H 0.251 0.749 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.233 -16.106 -11.444 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.229 6.229 4 C 0.097 3.903 5 C -0.177 4.177 6 C -0.043 4.043 7 C -0.154 4.154 8 C 0.340 3.660 9 O -0.335 6.335 10 N -0.351 5.351 11 C -0.027 4.027 12 C -0.172 4.172 13 C -0.163 4.163 14 C 0.028 3.972 15 H 0.094 0.906 16 C 0.021 3.979 17 N -0.360 5.360 18 C -0.363 4.363 19 H 0.080 0.920 20 C -0.208 4.208 21 N -0.573 5.573 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.216 1.216 26 C -0.078 4.078 27 C -0.238 4.238 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.153 0.847 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.226 0.774 44 H 0.061 0.939 45 H 0.155 0.845 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -17.129 -15.322 -10.926 25.447 hybrid contribution 0.172 0.066 0.942 0.960 sum -16.957 -15.256 -9.984 24.899 Atomic orbital electron populations 1.21779 0.92740 1.02840 1.03585 1.22804 0.95875 0.82001 1.01533 1.86031 1.19228 1.29367 1.88281 1.19198 0.82069 0.94231 0.94797 1.20376 0.94985 0.94825 1.07543 1.21108 0.91452 0.99259 0.92485 1.19978 0.93767 0.93891 1.07807 1.17900 0.85396 0.83244 0.79506 1.91119 1.74707 1.27493 1.40163 1.48383 1.07203 1.21048 1.58479 1.22518 0.98200 0.87008 0.95020 1.22794 0.94876 1.01464 0.98089 1.22661 0.97445 0.97262 0.98885 1.21901 0.79317 0.98110 0.97901 0.90570 1.20978 0.96009 0.89753 0.91200 1.42327 1.80834 1.00512 1.12296 1.19079 1.36664 0.91441 0.89149 0.92001 1.24661 1.02920 0.95754 0.97456 1.69686 1.55113 0.98124 1.34388 0.86375 0.78163 0.76784 0.85485 1.21588 1.21850 1.21632 1.21501 0.94597 0.96909 0.94838 1.21118 0.94061 0.97951 1.10636 0.91505 0.90377 0.91466 0.91933 0.91892 0.84721 0.83999 0.91742 0.90607 0.90718 0.90192 0.90112 0.90399 0.96278 0.96510 0.77436 0.93937 0.84535 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 37.16 0.38 -0.47 16 2 C 0.05 0.39 5.45 37.16 0.20 0.60 16 3 O -0.32 -3.48 10.12 -18.85 -0.19 -3.67 16 4 C 0.14 1.74 6.70 -39.02 -0.26 1.48 16 5 C -0.16 -2.08 9.97 -39.50 -0.39 -2.48 16 6 C -0.02 -0.37 9.59 -39.22 -0.38 -0.75 16 7 C -0.15 -2.42 5.63 -104.96 -0.59 -3.01 16 8 C 0.55 10.84 7.40 -12.44 -0.09 10.75 16 9 O -0.46 -11.82 14.23 5.29 0.08 -11.75 16 10 N -0.61 -10.15 3.02 -164.20 -0.50 -10.64 16 11 C 0.10 1.08 5.04 -2.52 -0.01 1.07 16 12 C -0.13 -1.28 7.08 -24.58 -0.17 -1.45 16 13 C -0.12 -1.50 6.35 -24.89 -0.16 -1.65 16 14 C 0.13 2.28 3.08 -66.95 -0.21 2.07 16 15 H 0.08 1.48 7.80 -51.93 -0.41 1.07 16 16 C 0.15 3.28 5.58 -4.04 -0.02 3.26 16 17 N -0.71 -19.99 4.16 -59.91 -0.25 -20.24 16 18 C -0.23 -7.09 9.99 -15.06 -0.15 -7.24 16 19 H 0.06 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.92 -30.39 13.06 55.49 0.72 -29.67 16 22 Si 0.90 24.16 29.55 -169.99 -5.02 19.13 16 23 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 24 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 25 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 26 C -0.06 -0.76 7.91 -39.22 -0.31 -1.07 16 27 C -0.22 -2.44 9.01 -39.49 -0.36 -2.79 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.06 0.43 7.65 -51.93 -0.40 0.03 16 33 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 2.26 7.93 -52.49 -0.42 1.84 16 35 H 0.06 0.65 7.16 -51.93 -0.37 0.28 16 36 H 0.08 0.76 6.43 -51.93 -0.33 0.43 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.89 7.83 -51.93 -0.41 0.49 16 41 H 0.02 0.45 8.06 -51.93 -0.42 0.03 16 42 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 43 H 0.39 11.76 6.39 -40.82 -0.26 11.50 16 44 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 45 H 0.14 1.48 4.87 -52.48 -0.26 1.22 16 46 H 0.13 1.06 6.28 -52.49 -0.33 0.74 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -37.76 369.04 -9.12 -46.89 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.91 Total: 6.55 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.62 Total: -2.16 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.02 Total: -60.55 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.12 Total: -15.42 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.02 Total: 19.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.76 -9.12 -46.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753601887.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.638 kcal (2) G-P(sol) polarization free energy of solvation -37.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds