Wall clock time and date at job start Tue Mar 31 2020 13:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 119.99703 * 2 1 4 4 H 1.08001 * 119.99855 * 165.05632 * 3 2 1 5 5 C 1.38811 * 120.00292 * 344.77636 * 3 2 1 6 6 N 1.31613 * 120.00028 * 343.75724 * 5 3 2 7 7 Si 1.86806 * 120.00058 * 163.75005 * 5 3 2 8 8 H 1.48504 * 109.46773 * 90.00439 * 7 5 3 9 9 H 1.48497 * 109.47241 * 210.00075 * 7 5 3 10 10 H 1.48499 * 109.47205 * 330.00810 * 7 5 3 11 11 C 1.46492 * 120.00268 * 180.02562 * 2 1 3 12 12 C 1.53006 * 109.47011 * 269.99660 * 11 2 1 13 13 N 1.46498 * 109.47222 * 179.97438 * 12 11 2 14 14 C 1.46502 * 119.99707 * 89.99967 * 13 12 11 15 15 C 1.34776 * 120.00549 * 270.00265 * 13 12 11 16 16 O 1.21293 * 119.99713 * 4.34876 * 15 13 12 17 17 C 1.50697 * 120.00357 * 184.34999 * 15 13 12 18 18 H 1.08998 * 109.33744 * 28.95252 * 17 15 13 19 19 O 1.42730 * 109.33726 * 148.62727 * 17 15 13 20 20 C 1.43159 * 113.16530 * 172.12092 * 19 17 15 21 21 C 1.52974 * 108.32320 * 289.05491 * 20 19 17 22 22 C 1.50741 * 109.75088 * 49.27815 * 21 20 19 23 23 C 1.38596 * 118.75765 * 163.12740 * 22 21 20 24 24 C 1.38072 * 120.27678 * 179.75209 * 23 22 21 25 25 C 1.38258 * 119.86106 * 0.02562 * 24 23 22 26 26 C 1.38057 * 119.89661 * 0.08023 * 25 24 23 27 27 C 1.37903 * 121.35581 * 343.04168 * 22 21 20 28 28 H 1.08997 * 109.47377 * 84.81583 * 1 2 3 29 29 H 1.08999 * 109.47201 * 204.82255 * 1 2 3 30 30 H 1.09004 * 109.46913 * 324.81655 * 1 2 3 31 31 H 0.97006 * 120.00091 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47447 * 29.99098 * 11 2 1 33 33 H 1.08997 * 109.47726 * 150.00122 * 11 2 1 34 34 H 1.08991 * 109.47114 * 300.00133 * 12 11 2 35 35 H 1.09004 * 109.46858 * 59.99707 * 12 11 2 36 36 H 1.08997 * 109.47004 * 85.17661 * 14 13 12 37 37 H 1.09001 * 109.47177 * 205.17022 * 14 13 12 38 38 H 1.08995 * 109.47313 * 325.17699 * 14 13 12 39 39 H 1.09001 * 109.67245 * 169.42770 * 20 19 17 40 40 H 1.08992 * 109.91597 * 48.82833 * 20 19 17 41 41 H 1.09008 * 109.42730 * 289.19296 * 21 20 19 42 42 H 1.09004 * 109.42205 * 169.36571 * 21 20 19 43 43 H 1.07999 * 119.86431 * 359.77975 * 23 22 21 44 44 H 1.08000 * 120.07084 * 179.97438 * 24 23 22 45 45 H 1.07995 * 120.05588 * 180.08766 * 25 24 23 46 46 H 1.08002 * 119.85148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2022 1.2018 0.2412 5 6 1.4921 2.3670 -0.3157 6 7 0.3218 2.3283 -0.9166 7 14 2.2682 4.0113 0.1127 8 1 3.1127 4.4699 -1.0195 9 1 1.2003 5.0106 0.3701 10 1 3.1085 3.8606 1.3277 11 6 2.1975 -1.2686 -0.0006 12 6 2.4526 -1.7109 1.4418 13 7 3.1846 -2.9799 1.4413 14 6 4.6496 -2.9803 1.4410 15 6 2.5104 -4.1469 1.4410 16 8 1.3001 -4.1480 1.3615 17 6 3.2602 -5.4504 1.5394 18 1 4.1856 -5.2935 2.0937 19 8 2.4548 -6.4082 2.2258 20 6 3.0115 -7.7270 2.2097 21 6 2.8958 -8.2806 0.7883 22 6 3.4198 -7.2674 -0.1972 23 6 3.7356 -7.6864 -1.4800 24 6 4.2132 -6.7839 -2.4093 25 6 4.3775 -5.4566 -2.0587 26 6 4.0651 -5.0389 -0.7804 27 6 3.5862 -5.9442 0.1540 28 1 -0.3634 0.0929 -1.0234 29 1 -0.3633 -0.9327 0.4314 30 1 -0.3633 0.8400 0.5922 31 1 -0.1379 3.1536 -1.1369 32 1 1.6084 -2.0282 -0.5146 33 1 3.1499 -1.1381 -0.5143 34 1 3.0416 -0.9515 1.9559 35 1 1.5002 -1.8414 1.9556 36 1 5.0131 -2.8944 2.4650 37 1 5.0126 -3.9104 1.0036 38 1 5.0132 -2.1367 0.8544 39 1 2.4593 -8.3668 2.8980 40 1 4.0602 -7.6910 2.5045 41 1 1.8502 -8.4947 0.5666 42 1 3.4778 -9.1987 0.7084 43 1 3.6073 -8.7232 -1.7540 44 1 4.4586 -7.1141 -3.4079 45 1 4.7494 -4.7477 -2.7835 46 1 4.1941 -4.0020 -0.5071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753858669.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:28 Heat of formation + Delta-G solvation = -9.829090 kcal Electronic energy + Delta-G solvation = -27440.779016 eV Core-core repulsion = 23718.007163 eV Total energy + Delta-G solvation = -3722.771852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.05439 -39.10076 -37.74120 -36.02695 -34.98526 -33.33480 -32.21110 -31.31035 -29.77683 -28.67974 -26.91574 -26.07296 -25.65004 -24.13724 -23.57157 -22.39837 -20.57212 -20.38626 -19.08306 -17.71381 -17.19240 -16.81141 -16.59932 -15.82642 -15.64667 -15.24286 -15.13690 -14.76074 -14.40224 -14.07702 -13.79956 -13.60605 -13.53082 -13.19773 -12.99287 -12.76639 -12.63383 -12.47982 -12.27814 -12.14810 -11.99240 -11.92541 -11.29994 -11.23564 -10.89880 -10.83867 -10.79782 -10.47996 -10.14548 -9.93092 -9.87061 -9.79409 -9.68861 -8.95661 -8.76549 -8.67194 -8.36093 -6.77085 -5.68560 -3.08893 1.05971 1.16628 2.59498 2.90885 3.39613 3.46287 3.48130 3.53688 3.83320 4.33133 4.34992 4.50988 4.54187 4.57046 4.79627 4.87438 4.91418 4.95999 5.03127 5.17101 5.23518 5.32906 5.41378 5.46311 5.47605 5.59968 5.63222 5.73065 5.73819 5.76752 5.85288 6.17334 6.21130 6.29687 6.30702 6.32924 6.52432 6.65274 6.76123 6.79391 6.93417 6.98566 7.52759 7.54075 7.74993 7.88069 8.32632 8.40840 9.26826 9.91831 10.39133 11.36738 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.003181 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.398079 B = 8799.676137 C = 9227.046457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.601 5.601 3 C -0.255 4.255 4 H 0.071 0.929 5 C -0.001 4.001 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.290 1.290 10 H -0.281 1.281 11 C 0.144 3.856 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.062 3.938 15 C 0.522 3.478 16 O -0.509 6.509 17 C 0.117 3.883 18 H 0.090 0.910 19 O -0.348 6.348 20 C 0.058 3.942 21 C -0.117 4.117 22 C -0.066 4.066 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.111 4.111 28 H 0.025 0.975 29 H 0.000 1.000 30 H 0.049 0.951 31 H 0.252 0.748 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.124 0.876 45 H 0.127 0.873 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 -22.254 3.056 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.385 4.385 4 H 0.088 0.912 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.015 3.985 12 C -0.030 4.030 13 N -0.345 5.345 14 C -0.081 4.081 15 C 0.307 3.693 16 O -0.382 6.382 17 C 0.055 3.945 18 H 0.107 0.893 19 O -0.266 6.266 20 C -0.018 4.018 21 C -0.154 4.154 22 C -0.066 4.066 23 C -0.138 4.138 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.131 4.131 27 C -0.112 4.112 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.145 0.855 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.041 -22.034 3.053 24.834 hybrid contribution 0.728 0.923 -0.070 1.178 sum 11.770 -21.110 2.983 24.353 Atomic orbital electron populations 1.20838 0.82050 0.95833 0.99377 1.43908 1.02185 1.00372 1.85995 1.19215 0.94213 0.84351 1.40695 0.91163 1.24881 0.97439 0.98068 0.99540 1.70148 1.16183 1.26053 1.42870 0.86284 0.78137 0.84059 0.78206 1.21579 1.21600 1.20637 1.20955 0.96081 0.88682 0.92803 1.22591 0.96754 0.81584 1.02025 1.47941 1.06703 1.06377 1.73487 1.22071 0.80249 1.03402 1.02351 1.19840 0.87910 0.84113 0.77427 1.90735 1.13704 1.86598 1.47202 1.20805 0.94183 0.88888 0.90597 0.89300 1.88174 1.47156 1.17328 1.73935 1.22691 0.99143 0.83833 0.96181 1.21164 1.02637 0.97285 0.94289 1.19430 0.98657 0.93345 0.95201 1.21033 1.00231 0.99844 0.92698 1.21169 0.99005 0.93533 0.99346 1.21144 1.00007 0.96115 0.96174 1.21434 0.98277 0.99926 0.93503 1.19768 1.01812 0.94000 0.95610 0.95652 0.98138 0.93197 0.93788 0.94206 0.93798 0.90398 0.90459 0.92288 0.90878 0.90078 0.87717 0.92413 0.89309 0.89542 0.85844 0.85786 0.85469 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.34 8.98 59.85 0.54 4.88 16 2 N -0.60 -15.71 2.93 -181.12 -0.53 -16.24 16 3 C -0.26 -7.06 9.71 -15.06 -0.15 -7.20 16 4 H 0.07 1.84 7.88 -52.49 -0.41 1.43 16 5 C 0.00 -0.04 5.07 -17.43 -0.09 -0.13 16 6 N -0.91 -27.02 10.45 55.49 0.58 -26.44 16 7 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 8 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.14 3.10 5.97 -4.04 -0.02 3.08 16 12 C 0.09 1.76 5.72 -4.04 -0.02 1.74 16 13 N -0.61 -9.32 2.55 -181.57 -0.46 -9.78 16 14 C 0.06 0.66 8.57 59.85 0.51 1.17 16 15 C 0.52 8.87 6.06 -10.99 -0.07 8.80 16 16 O -0.51 -11.06 16.38 -12.19 -0.20 -11.26 16 17 C 0.12 1.56 2.44 -29.06 -0.07 1.49 16 18 H 0.09 0.94 6.68 -51.93 -0.35 0.59 16 19 O -0.35 -4.88 10.14 -52.97 -0.54 -5.42 16 20 C 0.06 0.53 6.85 37.14 0.25 0.78 16 21 C -0.12 -1.02 6.00 -27.88 -0.17 -1.19 16 22 C -0.07 -0.74 5.78 -104.59 -0.60 -1.34 16 23 C -0.12 -1.17 9.67 -39.51 -0.38 -1.56 16 24 C -0.11 -1.10 10.05 -39.64 -0.40 -1.50 16 25 C -0.12 -1.27 10.05 -39.64 -0.40 -1.67 16 26 C -0.11 -1.40 8.12 -39.50 -0.32 -1.72 16 27 C -0.11 -1.41 5.39 -104.62 -0.56 -1.98 16 28 H 0.03 0.72 7.54 -51.93 -0.39 0.32 16 29 H 0.00 0.00 8.03 -51.93 -0.42 -0.42 16 30 H 0.05 1.40 6.89 -51.93 -0.36 1.04 16 31 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 0.90 8.04 -51.93 -0.42 0.49 16 34 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 35 H 0.08 1.62 7.49 -51.93 -0.39 1.23 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.65 4.33 -51.93 -0.22 0.43 16 38 H 0.08 0.83 8.11 -51.93 -0.42 0.41 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 41 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.14 1.66 4.64 -52.49 -0.24 1.42 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -35.07 366.66 -9.58 -44.65 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.97 Total: -1.54 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.95 Total: 3.64 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.41 Total: -52.47 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.74 Total: -16.68 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.07 -9.58 -44.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753858669.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.821 kcal (2) G-P(sol) polarization free energy of solvation -35.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds