Wall clock time and date at job start Tue Mar 31 2020 12:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47438 * 2 1 4 4 C 1.42893 * 114.00136 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47266 * 30.00066 * 4 3 2 6 6 C 1.50705 * 109.47134 * 269.99770 * 4 3 2 7 7 O 1.21274 * 120.00048 * 354.99811 * 6 4 3 8 8 N 1.34778 * 119.99796 * 174.99824 * 6 4 3 9 9 C 1.46500 * 119.99894 * 180.02562 * 8 6 4 10 10 C 1.50695 * 109.47220 * 180.02562 * 9 8 6 11 11 C 1.31007 * 120.00352 * 124.99842 * 10 9 8 12 12 C 1.50700 * 120.00057 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46701 * 125.00081 * 12 11 10 14 14 C 1.36940 * 119.99748 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99983 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00184 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00037 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47085 * 90.00502 * 18 16 14 20 20 H 1.48506 * 109.47139 * 210.00335 * 18 16 14 21 21 H 1.48497 * 109.47135 * 330.00291 * 18 16 14 22 22 C 1.50703 * 109.47481 * 149.99814 * 4 3 2 23 23 C 1.38235 * 120.00292 * 220.00139 * 22 4 3 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 39.97431 * 22 4 3 28 28 H 1.09001 * 109.46957 * 60.00068 * 1 2 3 29 29 H 1.08997 * 109.47533 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46850 * 300.00424 * 1 2 3 31 31 H 1.08992 * 109.47279 * 239.99473 * 2 1 3 32 32 H 1.09006 * 109.46517 * 120.00002 * 2 1 3 33 33 H 0.97003 * 120.00258 * 0.02562 * 8 6 4 34 34 H 1.09003 * 109.47129 * 300.00111 * 9 8 6 35 35 H 1.08994 * 109.47039 * 59.99675 * 9 8 6 36 36 H 1.08006 * 120.00383 * 304.99819 * 10 9 8 37 37 H 1.07996 * 119.99304 * 0.02562 * 11 10 9 38 38 H 1.08997 * 109.46863 * 244.99717 * 12 11 10 39 39 H 1.08997 * 109.47174 * 5.00035 * 12 11 10 40 40 H 0.96998 * 119.99993 * 359.97438 * 13 12 11 41 41 H 0.96996 * 119.99809 * 179.97438 * 17 16 14 42 42 H 1.08001 * 119.99730 * 359.97438 * 23 22 4 43 43 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00455 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5129 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5295 2.3418 8 7 5.2558 1.5028 1.6699 9 6 5.7420 1.5410 3.0513 10 6 7.2490 1.5368 3.0538 11 6 7.9057 2.4826 3.6786 12 6 9.4127 2.4781 3.6815 13 7 9.9058 3.7604 3.1727 14 6 11.2530 3.9891 3.0834 15 1 11.9519 3.2240 3.3876 16 6 11.7203 5.2038 2.6008 17 7 10.8684 6.1360 2.2295 18 14 13.5580 5.5155 2.4783 19 1 14.0460 5.0810 1.1448 20 1 13.8271 6.9652 2.6556 21 1 14.2619 4.7483 3.5371 22 6 3.8349 2.7262 -0.7099 23 6 4.9336 2.7276 -1.5488 24 6 5.3038 3.8888 -2.2008 25 6 4.5749 5.0485 -2.0147 26 6 3.4754 5.0468 -1.1769 27 6 3.1065 3.8860 -0.5230 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 5.8873 1.4795 0.9340 34 1 5.3808 2.4466 3.5388 35 1 5.3750 0.6675 3.5900 36 1 7.7877 0.7541 2.5404 37 1 7.3670 3.2651 4.1923 38 1 9.7736 2.3279 4.6989 39 1 9.7748 1.6710 3.0447 40 1 9.2780 4.4473 2.8991 41 1 11.1950 6.9850 1.8926 42 1 5.5027 1.8213 -1.6948 43 1 6.1624 3.8901 -2.8560 44 1 4.8667 5.9570 -2.5207 45 1 2.9061 5.9529 -1.0311 46 1 2.2481 3.8850 0.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754212995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:11 Heat of formation + Delta-G solvation = -30.790440 kcal Electronic energy + Delta-G solvation = -25739.529046 eV Core-core repulsion = 22015.848241 eV Total energy + Delta-G solvation = -3723.680805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52063 -38.88079 -37.76339 -36.20847 -34.70421 -33.21015 -32.55053 -31.10875 -30.77815 -30.52245 -27.91795 -26.28779 -24.08205 -23.28599 -22.55451 -22.15870 -21.74464 -20.61140 -19.48322 -17.76181 -17.37620 -17.09484 -16.98666 -15.95509 -15.64637 -15.44406 -14.94225 -14.78940 -14.69486 -14.33795 -13.95671 -13.70493 -13.55014 -13.45437 -13.26713 -12.92244 -12.85049 -12.63092 -12.44857 -12.13709 -12.01813 -11.85705 -11.54345 -11.25905 -11.09267 -11.04800 -10.84631 -10.70278 -10.61801 -10.09611 -9.82529 -9.66511 -9.29678 -9.02831 -9.00233 -8.85243 -8.70956 -6.96581 -5.79430 -3.09225 1.10805 1.30250 2.23449 2.48901 3.05716 3.41399 3.43016 3.46604 3.48505 3.80291 4.40953 4.55923 4.57521 4.63464 4.79739 4.85705 4.91911 4.98073 4.99826 5.05950 5.10755 5.24725 5.34569 5.38332 5.50337 5.53345 5.59230 5.65936 5.76840 5.79107 5.85375 5.92809 5.97941 6.11750 6.30462 6.31736 6.33560 6.42113 6.45151 6.55178 6.78351 6.85187 6.88689 7.12756 7.43053 7.66395 8.11298 8.38711 9.50006 10.06262 10.41607 11.43181 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002745 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.110345 B =10197.556732 C =11706.595642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.350 6.350 4 C 0.121 3.879 5 H 0.092 0.908 6 C 0.494 3.506 7 O -0.527 6.527 8 N -0.718 5.718 9 C 0.156 3.844 10 C -0.202 4.202 11 C -0.105 4.105 12 C 0.173 3.827 13 N -0.729 5.729 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.095 4.095 23 C -0.107 4.107 24 C -0.116 4.116 25 C -0.109 4.109 26 C -0.121 4.121 27 C -0.085 4.085 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.403 0.597 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.031 0.969 39 H 0.025 0.975 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.880 -11.429 -9.084 23.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.268 6.268 4 C 0.059 3.941 5 H 0.110 0.890 6 C 0.279 3.721 7 O -0.403 6.403 8 N -0.371 5.371 9 C 0.033 3.967 10 C -0.222 4.222 11 C -0.124 4.124 12 C 0.046 3.954 13 N -0.374 5.374 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.739 3.261 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.095 4.095 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.127 4.127 26 C -0.139 4.139 27 C -0.103 4.103 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.237 0.763 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.127 0.873 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -19.424 -11.275 -8.381 23.972 hybrid contribution 1.386 0.265 -0.457 1.483 sum -18.037 -11.010 -8.838 22.906 Atomic orbital electron populations 1.21705 0.93308 1.02261 1.03299 1.22605 0.96093 0.83371 1.00118 1.88009 1.17515 1.26862 1.94416 1.20653 0.83909 0.97364 0.92166 0.88994 1.21129 0.82663 0.76684 0.91648 1.90705 1.55153 1.48638 1.45758 1.46048 1.06699 1.74829 1.09529 1.20319 0.91763 1.02194 0.82402 1.22675 0.93800 1.01346 1.04339 1.23343 0.97524 0.95931 0.95644 1.19822 0.87914 0.90499 0.97192 1.42299 1.04803 1.12849 1.77424 1.19235 0.83198 0.98837 1.36055 0.91090 1.24766 0.97767 0.96528 1.01879 1.69672 1.32695 1.06249 1.49402 0.86169 0.84993 0.77136 0.77760 1.21669 1.21706 1.20711 1.19315 0.97341 0.93679 0.99179 1.20941 0.96212 0.98930 0.96412 1.21127 0.99744 0.92655 0.99849 1.21271 0.95112 0.98307 0.98006 1.21199 0.97477 0.98086 0.97170 1.21010 0.99040 0.91807 0.98405 0.91855 0.91047 0.91534 0.93254 0.92955 0.76307 0.91210 0.91108 0.86759 0.87286 0.95139 0.95693 0.78118 0.93448 0.85779 0.85473 0.85774 0.85795 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.05 0.50 6.46 37.16 0.24 0.74 16 3 O -0.35 -4.19 8.85 -55.09 -0.49 -4.68 16 4 C 0.12 1.33 2.72 -29.03 -0.08 1.26 16 5 H 0.09 0.76 7.65 -51.93 -0.40 0.36 16 6 C 0.49 6.65 7.11 -10.98 -0.08 6.57 16 7 O -0.53 -8.98 16.51 -14.30 -0.24 -9.22 16 8 N -0.72 -8.75 5.50 -61.47 -0.34 -9.09 16 9 C 0.16 2.03 6.11 -5.20 -0.03 2.00 16 10 C -0.20 -2.76 9.24 -36.03 -0.33 -3.10 16 11 C -0.10 -1.72 9.24 -36.03 -0.33 -2.05 16 12 C 0.17 3.45 6.70 -5.19 -0.03 3.42 16 13 N -0.73 -18.60 5.59 -61.09 -0.34 -18.94 16 14 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 15 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.21 13.06 55.49 0.72 -27.48 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 C -0.09 -1.08 4.92 -104.62 -0.51 -1.59 16 23 C -0.11 -1.08 9.67 -39.59 -0.38 -1.47 16 24 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 25 C -0.11 -1.16 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.08 -1.03 9.35 -39.58 -0.37 -1.40 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.40 4.21 8.46 -40.82 -0.35 3.87 16 34 H 0.07 1.00 7.79 -51.93 -0.40 0.60 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.45 7.84 -52.48 -0.41 1.04 16 37 H 0.11 1.77 7.84 -52.49 -0.41 1.36 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 40 H 0.39 10.38 7.66 -40.82 -0.31 10.07 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 0.94 8.04 -52.49 -0.42 0.52 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.59 7.78 -52.49 -0.41 1.18 16 LS Contribution 395.92 15.07 5.97 5.97 Total: -1.00 -33.95 395.92 -10.00 -43.95 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -7.29 Total: 10.94 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.97 Total: -8.69 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: 0.04 Total: -55.52 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.72 Total: -13.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.95 -10.00 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754212995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.155 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds