Wall clock time and date at job start Tue Mar 31 2020 12:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42898 * 109.47438 * 2 1 4 4 C 1.42893 * 114.00136 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47266 * 30.00066 * 4 3 2 6 6 C 1.50705 * 109.47134 * 269.99770 * 4 3 2 7 7 O 1.21274 * 120.00048 * 354.99811 * 6 4 3 8 8 N 1.34778 * 119.99796 * 174.99824 * 6 4 3 9 9 C 1.46500 * 119.99894 * 180.02562 * 8 6 4 10 10 C 1.50695 * 109.47220 * 180.02562 * 9 8 6 11 11 C 1.31007 * 120.00352 * 124.99842 * 10 9 8 12 12 C 1.50700 * 120.00057 * 179.97438 * 11 10 9 13 13 N 1.46504 * 109.46701 * 125.00081 * 12 11 10 14 14 C 1.36940 * 119.99748 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99983 * 179.97438 * 14 13 12 17 17 N 1.31626 * 120.00184 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00037 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47085 * 90.00502 * 18 16 14 20 20 H 1.48506 * 109.47139 * 210.00335 * 18 16 14 21 21 H 1.48497 * 109.47135 * 330.00291 * 18 16 14 22 22 C 1.50703 * 109.47481 * 149.99814 * 4 3 2 23 23 C 1.38235 * 120.00292 * 220.00139 * 22 4 3 24 24 C 1.38230 * 119.99899 * 179.97438 * 23 22 4 25 25 C 1.38235 * 120.00326 * 359.95697 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.97438 * 25 24 23 27 27 C 1.38234 * 119.99503 * 39.97431 * 22 4 3 28 28 H 1.09001 * 109.46957 * 60.00068 * 1 2 3 29 29 H 1.08997 * 109.47533 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46850 * 300.00424 * 1 2 3 31 31 H 1.08992 * 109.47279 * 239.99473 * 2 1 3 32 32 H 1.09006 * 109.46517 * 120.00002 * 2 1 3 33 33 H 0.97003 * 120.00258 * 0.02562 * 8 6 4 34 34 H 1.09003 * 109.47129 * 300.00111 * 9 8 6 35 35 H 1.08994 * 109.47039 * 59.99675 * 9 8 6 36 36 H 1.08006 * 120.00383 * 304.99819 * 10 9 8 37 37 H 1.07996 * 119.99304 * 0.02562 * 11 10 9 38 38 H 1.08997 * 109.46863 * 244.99717 * 12 11 10 39 39 H 1.08997 * 109.47174 * 5.00035 * 12 11 10 40 40 H 0.96998 * 119.99993 * 359.97438 * 13 12 11 41 41 H 0.96996 * 119.99809 * 179.97438 * 17 16 14 42 42 H 1.08001 * 119.99730 * 359.97438 * 23 22 4 43 43 H 1.08000 * 120.00376 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00616 * 179.72578 * 25 24 23 45 45 H 1.08001 * 120.00299 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00455 * 0.02562 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6014 -0.5129 6 6 3.9311 1.4999 1.4216 7 8 3.1416 1.5295 2.3418 8 7 5.2558 1.5028 1.6699 9 6 5.7420 1.5410 3.0513 10 6 7.2490 1.5368 3.0538 11 6 7.9057 2.4826 3.6786 12 6 9.4127 2.4781 3.6815 13 7 9.9058 3.7604 3.1727 14 6 11.2530 3.9891 3.0834 15 1 11.9519 3.2240 3.3876 16 6 11.7203 5.2038 2.6008 17 7 10.8684 6.1360 2.2295 18 14 13.5580 5.5155 2.4783 19 1 14.0460 5.0810 1.1448 20 1 13.8271 6.9652 2.6556 21 1 14.2619 4.7483 3.5371 22 6 3.8349 2.7262 -0.7099 23 6 4.9336 2.7276 -1.5488 24 6 5.3038 3.8888 -2.2008 25 6 4.5749 5.0485 -2.0147 26 6 3.4754 5.0468 -1.1769 27 6 3.1065 3.8860 -0.5230 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 5.8873 1.4795 0.9340 34 1 5.3808 2.4466 3.5388 35 1 5.3750 0.6675 3.5900 36 1 7.7877 0.7541 2.5404 37 1 7.3670 3.2651 4.1923 38 1 9.7736 2.3279 4.6989 39 1 9.7748 1.6710 3.0447 40 1 9.2780 4.4473 2.8991 41 1 11.1950 6.9850 1.8926 42 1 5.5027 1.8213 -1.6948 43 1 6.1624 3.8901 -2.8560 44 1 4.8667 5.9570 -2.5207 45 1 2.9061 5.9529 -1.0311 46 1 2.2481 3.8850 0.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754212995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:10 Heat of formation + Delta-G solvation = -51.613418 kcal Electronic energy + Delta-G solvation = -25740.431998 eV Core-core repulsion = 22015.848241 eV Total energy + Delta-G solvation = -3724.583757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47308 -39.79038 -38.63359 -37.60991 -36.22146 -34.54489 -33.64520 -32.37222 -31.86633 -31.46915 -29.18049 -27.52052 -25.71341 -24.05541 -23.68169 -23.30539 -22.77727 -21.64368 -20.74114 -19.15366 -18.69111 -18.22762 -17.82738 -16.94450 -16.70560 -16.60218 -16.24889 -15.97715 -15.66468 -15.50623 -15.20298 -15.02921 -14.99502 -14.61407 -14.28279 -14.25181 -13.66397 -13.51283 -13.45109 -13.26754 -13.17190 -12.91922 -12.86385 -12.74530 -12.26271 -12.19624 -12.07431 -11.99340 -11.87455 -11.79244 -11.58863 -11.03944 -10.59599 -10.38998 -9.99925 -9.85086 -9.70601 -9.01285 -7.95526 -5.25700 0.27845 0.47346 1.02533 1.45434 1.48562 1.50218 1.58860 2.11876 2.57140 2.58956 2.96430 3.38225 3.58249 3.68149 3.74438 3.82622 4.07427 4.08971 4.13899 4.16665 4.23019 4.27842 4.33556 4.44356 4.45668 4.58473 4.63898 4.65021 4.69346 4.81289 4.91978 4.98269 4.99734 5.01662 5.12128 5.23738 5.27702 5.47898 5.50531 5.51864 5.60601 5.64254 5.81721 6.00083 6.05869 6.26236 6.45821 7.10279 7.32295 8.06171 8.30144 9.27912 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013919 B = 0.002745 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.110345 B =10197.556732 C =11706.595642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 O -0.372 6.372 4 C 0.126 3.874 5 H 0.127 0.873 6 C 0.493 3.507 7 O -0.569 6.569 8 N -0.709 5.709 9 C 0.157 3.843 10 C -0.160 4.160 11 C -0.132 4.132 12 C 0.174 3.826 13 N -0.744 5.744 14 C -0.248 4.248 15 H 0.079 0.921 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.976 3.024 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.269 1.269 22 C -0.104 4.104 23 C -0.106 4.106 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.132 4.132 27 C -0.106 4.106 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.414 0.586 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.374 0.626 41 H 0.252 0.748 42 H 0.154 0.846 43 H 0.145 0.855 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.988 -13.314 -10.372 24.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.290 6.290 4 C 0.064 3.936 5 H 0.144 0.856 6 C 0.279 3.721 7 O -0.448 6.448 8 N -0.362 5.362 9 C 0.034 3.966 10 C -0.179 4.179 11 C -0.151 4.151 12 C 0.049 3.951 13 N -0.387 5.387 14 C -0.380 4.380 15 H 0.097 0.903 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.804 3.196 19 H -0.211 1.211 20 H -0.223 1.223 21 H -0.194 1.194 22 C -0.104 4.104 23 C -0.124 4.124 24 C -0.143 4.143 25 C -0.137 4.137 26 C -0.150 4.150 27 C -0.124 4.124 28 H 0.084 0.916 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.250 0.750 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.153 0.847 37 H 0.122 0.878 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.172 0.828 43 H 0.163 0.837 44 H 0.158 0.842 45 H 0.153 0.847 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.517 -13.211 -9.668 24.716 hybrid contribution 1.025 0.765 -0.048 1.280 sum -17.491 -12.446 -9.716 23.564 Atomic orbital electron populations 1.21729 0.92559 1.03532 1.02556 1.22821 0.96848 0.82388 1.00839 1.88003 1.18085 1.28594 1.94343 1.20709 0.83815 0.98518 0.90533 0.85569 1.21653 0.82471 0.75541 0.92415 1.90685 1.56195 1.50640 1.47264 1.45947 1.06724 1.74135 1.09440 1.20241 0.91204 1.02035 0.83109 1.22765 0.93938 0.99952 1.01267 1.23010 0.95569 0.97759 0.98794 1.19904 0.90171 0.88257 0.96805 1.42537 1.03979 1.14558 1.77627 1.19664 0.84609 0.98911 1.34767 0.90348 1.25617 1.02183 0.96560 1.02447 1.69832 1.34602 1.06575 1.50983 0.85110 0.79856 0.76544 0.78057 1.21084 1.22280 1.19372 1.19441 0.97837 0.93448 0.99703 1.21268 0.95664 1.00049 0.95414 1.21476 1.00189 0.92653 1.00009 1.21564 0.94919 0.99330 0.97907 1.21399 0.98025 0.98300 0.97316 1.21069 0.99336 0.92950 0.99084 0.91615 0.88765 0.93227 0.90720 0.93857 0.75002 0.92783 0.89964 0.84743 0.87844 0.95232 0.94641 0.79476 0.93952 0.82806 0.83695 0.84243 0.84700 0.86957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.05 0.81 6.46 71.98 0.46 1.27 16 3 O -0.37 -8.71 8.85 -129.99 -1.15 -9.86 16 4 C 0.13 2.59 2.72 29.10 0.08 2.67 16 5 H 0.13 1.67 7.65 -2.39 -0.02 1.66 16 6 C 0.49 12.83 7.11 87.66 0.62 13.45 16 7 O -0.57 -19.55 16.51 15.98 0.26 -19.28 16 8 N -0.71 -16.02 5.50 -466.80 -2.57 -18.59 16 9 C 0.16 3.87 6.11 85.63 0.52 4.39 16 10 C -0.16 -4.02 9.24 25.64 0.24 -3.79 16 11 C -0.13 -4.19 9.24 25.64 0.24 -3.96 16 12 C 0.17 6.80 6.70 85.63 0.57 7.38 16 13 N -0.74 -37.89 5.59 -347.18 -1.94 -39.84 16 14 C -0.25 -13.77 9.99 84.03 0.84 -12.93 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 17 N -0.97 -59.28 13.06 21.65 0.28 -59.00 16 18 Si 0.98 45.58 29.55 68.60 2.03 47.61 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C -0.10 -2.25 4.92 -19.87 -0.10 -2.35 16 23 C -0.11 -1.91 9.67 22.27 0.22 -1.69 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 25 C -0.12 -2.42 10.05 22.27 0.22 -2.20 16 26 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 27 C -0.11 -2.61 9.35 22.27 0.21 -2.40 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.41 7.51 8.46 -92.71 -0.78 6.73 16 34 H 0.05 1.54 7.79 -2.39 -0.02 1.52 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 2.91 7.84 -2.91 -0.02 2.89 16 37 H 0.10 3.40 7.84 -2.91 -0.02 3.37 16 38 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 1.32 7.79 -2.39 -0.02 1.30 16 40 H 0.37 20.41 7.66 -92.71 -0.71 19.70 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.15 1.74 8.04 -2.91 -0.02 1.72 16 43 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 44 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 46 H 0.11 3.00 7.78 -2.91 -0.02 2.98 16 Total: -1.00 -73.69 395.92 2.17 -71.51 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -0.52 Total: 37.72 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.78 Total: -10.28 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -4.23 Total: -117.42 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.89 Total: -29.14 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -73.69 2.17 -71.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754212995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.901 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds