Wall clock time and date at job start Tue Mar 31 2020 13:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36940 * 119.99945 * 2 1 4 4 H 1.08004 * 119.99499 * 203.04965 * 3 2 1 5 5 C 1.38808 * 120.00092 * 23.04617 * 3 2 1 6 6 N 1.31617 * 119.99848 * 12.93192 * 5 3 2 7 7 Si 1.86797 * 120.00130 * 192.92743 * 5 3 2 8 8 H 1.48498 * 109.47094 * 90.00472 * 7 5 3 9 9 H 1.48500 * 109.47242 * 210.00330 * 7 5 3 10 10 H 1.48499 * 109.47133 * 330.00089 * 7 5 3 11 11 C 1.46495 * 120.00169 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.47572 * 89.99164 * 11 2 1 13 13 C 1.53003 * 109.47163 * 179.97438 * 12 11 2 14 14 N 1.46502 * 109.46562 * 180.02562 * 13 12 11 15 15 C 1.46502 * 119.99890 * 90.00688 * 14 13 12 16 16 C 1.34780 * 120.00098 * 270.00129 * 14 13 12 17 17 O 1.21278 * 119.99762 * 359.97438 * 16 14 13 18 18 C 1.50700 * 119.99995 * 180.02562 * 16 14 13 19 19 H 1.08999 * 110.83041 * 303.71018 * 18 16 14 20 20 C 1.54714 * 110.93721 * 67.46360 * 18 16 14 21 21 O 1.43774 * 102.78480 * 143.44517 * 20 18 16 22 22 C 1.36135 * 109.23606 * 332.25462 * 21 20 18 23 23 C 1.39288 * 129.88281 * 198.43936 * 22 21 20 24 24 C 1.37939 * 120.23741 * 180.99089 * 23 22 21 25 25 C 1.38283 * 120.35037 * 359.95759 * 24 23 22 26 26 C 1.38347 * 119.76755 * 359.85068 * 25 24 23 27 27 C 1.37739 * 119.98001 * 0.02562 * 26 25 24 28 28 H 1.09003 * 109.46987 * 275.12204 * 1 2 3 29 29 H 1.08998 * 109.47289 * 35.12041 * 1 2 3 30 30 H 1.08999 * 109.47214 * 155.12513 * 1 2 3 31 31 H 0.97002 * 120.00381 * 179.97438 * 6 5 3 32 32 H 1.08993 * 109.47498 * 210.00083 * 11 2 1 33 33 H 1.09005 * 109.47188 * 329.99689 * 11 2 1 34 34 H 1.08992 * 109.47096 * 300.00546 * 12 11 2 35 35 H 1.09005 * 109.46435 * 60.00064 * 12 11 2 36 36 H 1.08990 * 109.47080 * 300.00429 * 13 12 11 37 37 H 1.08996 * 109.46874 * 60.00806 * 13 12 11 38 38 H 1.08998 * 109.47418 * 89.99824 * 15 14 13 39 39 H 1.09006 * 109.46857 * 209.99661 * 15 14 13 40 40 H 1.09000 * 109.47007 * 329.99356 * 15 14 13 41 41 H 1.09003 * 110.74310 * 261.76700 * 20 18 16 42 42 H 1.09000 * 110.75248 * 25.11279 * 20 18 16 43 43 H 1.08000 * 119.88537 * 0.98837 * 23 22 21 44 44 H 1.08002 * 119.82157 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.11827 * 179.83468 * 25 24 23 46 46 H 1.08008 * 120.01314 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4119 2.2597 1.1459 7 14 2.3159 4.0073 0.1456 8 1 1.7987 4.5534 -1.1348 9 1 1.9760 4.9363 1.2531 10 1 3.7909 3.8577 0.0602 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2180 -3.0346 -1.4437 14 7 3.4625 -3.4567 -2.8252 15 6 4.6833 -3.0329 -3.5153 16 6 2.5644 -4.2348 -3.4611 17 8 1.5541 -4.5861 -2.8895 18 6 2.8162 -4.6694 -4.8819 19 1 2.9711 -3.8065 -5.5296 20 6 4.0174 -5.6416 -4.9581 21 8 3.6144 -6.5656 -5.9832 22 6 2.2552 -6.6350 -6.0153 23 6 1.4232 -7.6052 -6.5691 24 6 0.0526 -7.4643 -6.5040 25 6 -0.5078 -6.3602 -5.8882 26 6 0.3116 -5.3941 -5.3322 27 6 1.6804 -5.5340 -5.3939 28 1 -0.3633 0.0918 1.0236 29 1 -0.3634 0.8406 -0.5912 30 1 -0.3633 -0.9323 -0.4323 31 1 -0.0150 3.0661 1.4751 32 1 3.1498 -1.1386 0.5133 33 1 1.6084 -2.0286 0.5130 34 1 1.5000 -1.8400 -1.9570 35 1 3.0414 -0.9500 -1.9568 36 1 4.1703 -2.9040 -0.9301 37 1 2.6293 -3.7946 -0.9301 38 1 5.4708 -3.7669 -3.3444 39 1 4.4871 -2.9530 -4.5846 40 1 5.0003 -2.0636 -3.1307 41 1 4.9245 -5.1123 -5.2501 42 1 4.1585 -6.1564 -4.0077 43 1 1.8528 -8.4708 -7.0513 44 1 -0.5862 -8.2205 -6.9360 45 1 -1.5815 -6.2524 -5.8417 46 1 -0.1220 -4.5303 -4.8500 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755047282.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:12 Heat of formation + Delta-G solvation = -28.947298 kcal Electronic energy + Delta-G solvation = -26560.701807 eV Core-core repulsion = 22837.100927 eV Total energy + Delta-G solvation = -3723.600880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52757 -40.53353 -38.38876 -37.95756 -36.73324 -34.45959 -33.63217 -31.98797 -31.04427 -30.26581 -28.15463 -27.84336 -27.00166 -25.03720 -24.09913 -23.31115 -22.73168 -21.93542 -20.18255 -18.75226 -18.62538 -18.36527 -17.78238 -17.16654 -16.79828 -16.62617 -16.35553 -16.12061 -15.72228 -15.32543 -14.99919 -14.81795 -14.64148 -14.42398 -14.27732 -14.11574 -13.97020 -13.68134 -13.40472 -13.26830 -12.99941 -12.88754 -12.76425 -12.66376 -12.54986 -12.47754 -12.31506 -12.09039 -11.94857 -11.87169 -11.78544 -11.43599 -10.95497 -10.66108 -9.89066 -9.73016 -9.19330 -8.78269 -7.82969 -5.33592 0.27155 0.39053 1.45044 1.46294 1.47629 1.56397 1.92199 2.21481 2.50529 2.75834 3.12637 3.29982 3.44975 3.56412 3.67570 3.84756 3.97865 4.08613 4.19784 4.25631 4.34627 4.41465 4.44030 4.48364 4.50167 4.54078 4.59117 4.66540 4.70420 4.76103 4.82058 4.89793 4.94539 5.03475 5.18772 5.24081 5.31920 5.43252 5.45568 5.53494 5.56045 5.59471 5.60314 5.64304 6.15158 6.31630 6.33076 7.07191 7.12924 7.84916 8.31408 9.20783 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021136 B = 0.002617 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.444842 B =10694.789722 C =11347.836528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.623 5.623 3 C -0.260 4.260 4 H 0.076 0.924 5 C -0.060 4.060 6 N -0.943 5.943 7 Si 0.973 3.027 8 H -0.288 1.288 9 H -0.296 1.296 10 H -0.262 1.262 11 C 0.153 3.847 12 C -0.129 4.129 13 C 0.125 3.875 14 N -0.610 5.610 15 C 0.060 3.940 16 C 0.516 3.484 17 O -0.570 6.570 18 C -0.096 4.096 19 H 0.139 0.861 20 C 0.070 3.930 21 O -0.308 6.308 22 C 0.088 3.912 23 C -0.148 4.148 24 C -0.079 4.079 25 C -0.157 4.157 26 C -0.066 4.066 27 C -0.176 4.176 28 H 0.006 0.994 29 H 0.013 0.987 30 H 0.019 0.981 31 H 0.248 0.752 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.078 0.922 43 H 0.149 0.851 44 H 0.164 0.836 45 H 0.145 0.855 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -19.677 -17.367 27.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.346 5.346 3 C -0.390 4.390 4 H 0.094 0.906 5 C -0.255 4.255 6 N -0.590 5.590 7 Si 0.801 3.199 8 H -0.215 1.215 9 H -0.223 1.223 10 H -0.187 1.187 11 C 0.026 3.974 12 C -0.170 4.170 13 C 0.002 3.998 14 N -0.341 5.341 15 C -0.081 4.081 16 C 0.304 3.696 17 O -0.449 6.449 18 C -0.117 4.117 19 H 0.156 0.844 20 C -0.005 4.005 21 O -0.222 6.222 22 C 0.043 3.957 23 C -0.166 4.166 24 C -0.096 4.096 25 C -0.175 4.175 26 C -0.084 4.084 27 C -0.178 4.178 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.096 0.904 43 H 0.167 0.833 44 H 0.182 0.818 45 H 0.163 0.837 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.797 -19.847 -17.099 27.634 hybrid contribution -0.366 1.571 0.456 1.677 sum 8.431 -18.276 -16.642 26.116 Atomic orbital electron populations 1.20481 0.83411 0.95259 0.97519 1.44172 1.01911 1.02115 1.86421 1.19558 0.98574 0.86572 1.34324 0.90608 1.25901 0.98736 1.02259 0.98557 1.70252 1.21087 1.27636 1.40062 0.85173 0.78645 0.79412 0.76671 1.21514 1.22254 1.18671 1.20803 0.95865 0.86481 0.94235 1.22272 0.98905 0.96652 0.99172 1.21403 1.01337 0.95039 0.82018 1.48000 1.22166 1.49470 1.14500 1.22277 0.85256 1.02203 0.98353 1.20545 0.82800 0.78070 0.88203 1.90709 1.28673 1.57203 1.68336 1.21593 0.95311 1.00834 0.93974 0.84377 1.24052 0.97041 0.87926 0.91455 1.86815 1.17559 1.63654 1.54216 1.19794 0.83454 0.94562 0.97875 1.20610 0.92683 0.98712 1.04606 1.21281 0.93769 0.97723 0.96855 1.21374 1.00814 0.94965 1.00299 1.20471 0.91889 0.99439 0.96604 1.20461 0.94831 0.96950 1.05510 0.97554 0.96786 0.96232 0.94329 0.92545 0.94316 0.95408 0.92595 0.87641 0.91600 0.89352 0.89261 0.89992 0.82707 0.90352 0.83340 0.81821 0.83725 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.54 8.98 127.77 1.15 10.69 16 2 N -0.62 -32.61 2.92 -726.95 -2.12 -34.73 16 3 C -0.26 -14.45 9.65 84.03 0.81 -13.64 16 4 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 5 C -0.06 -3.43 5.10 84.86 0.43 -2.99 16 6 N -0.94 -57.57 10.71 21.65 0.23 -57.34 16 7 Si 0.97 45.31 29.57 68.60 2.03 47.34 16 8 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 9 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 10 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 11 C 0.15 6.29 5.64 86.38 0.49 6.78 16 12 C -0.13 -4.50 5.86 30.60 0.18 -4.32 16 13 C 0.13 3.31 5.41 86.38 0.47 3.78 16 14 N -0.61 -13.55 2.87 -846.75 -2.43 -15.98 16 15 C 0.06 0.73 9.18 127.77 1.17 1.91 16 16 C 0.52 13.71 6.96 87.66 0.61 14.32 16 17 O -0.57 -20.65 14.76 -3.02 -0.04 -20.69 16 18 C -0.10 -1.94 2.53 -11.40 -0.03 -1.97 16 19 H 0.14 2.20 7.25 -2.39 -0.02 2.18 16 20 C 0.07 1.03 6.59 72.57 0.48 1.51 16 21 O -0.31 -6.19 11.10 -95.08 -1.06 -7.24 16 22 C 0.09 1.98 7.04 22.68 0.16 2.14 16 23 C -0.15 -2.74 10.06 22.45 0.23 -2.51 16 24 C -0.08 -1.30 10.02 22.21 0.22 -1.08 16 25 C -0.16 -3.18 10.07 22.31 0.22 -2.96 16 26 C -0.07 -1.70 9.08 22.18 0.20 -1.50 16 27 C -0.18 -4.36 5.39 -19.53 -0.11 -4.47 16 28 H 0.01 0.36 7.34 -2.39 -0.02 0.34 16 29 H 0.01 0.77 7.34 -2.39 -0.02 0.76 16 30 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 31 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 33 H 0.04 1.56 8.07 -2.38 -0.02 1.54 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.98 8.14 -2.38 -0.02 1.97 16 36 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 37 H 0.07 1.97 7.42 -2.39 -0.02 1.96 16 38 H 0.09 0.59 8.12 -2.39 -0.02 0.57 16 39 H 0.09 0.75 6.12 -2.38 -0.01 0.73 16 40 H 0.08 1.03 8.07 -2.39 -0.02 1.01 16 41 H 0.16 0.97 7.55 -2.39 -0.02 0.95 16 42 H 0.08 1.21 7.91 -2.39 -0.02 1.19 16 43 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 45 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.11 3.11 7.81 -2.91 -0.02 3.08 16 Total: -1.00 -77.38 374.60 4.25 -73.14 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.96 Total: 9.84 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 6.69 Total: 5.67 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -4.33 Total: -108.05 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -1.10 Total: -27.94 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -77.38 4.25 -73.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755047282.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.189 kcal (2) G-P(sol) polarization free energy of solvation -77.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds