Wall clock time and date at job start Tue Mar 31 2020 12:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46843 * 110.99942 * 2 1 4 4 C 1.53040 * 109.51912 * 185.83784 * 3 2 1 5 5 C 1.53125 * 109.27967 * 300.82189 * 4 3 2 6 6 C 1.50707 * 109.51958 * 177.56121 * 5 4 3 7 7 O 1.21273 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99327 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99681 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02412 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99807 * 10 9 8 25 25 C 1.53116 * 109.15877 * 57.65748 * 5 4 3 26 26 C 1.46850 * 110.99524 * 124.21078 * 2 1 3 27 27 H 1.08999 * 109.46484 * 59.99339 * 1 2 3 28 28 H 1.08997 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46587 * 300.00286 * 1 2 3 30 30 H 1.08996 * 109.46390 * 65.82941 * 3 2 1 31 31 H 1.08998 * 109.45868 * 305.84800 * 3 2 1 32 32 H 1.09005 * 109.50468 * 180.87927 * 4 3 2 33 33 H 1.09001 * 109.53472 * 60.78427 * 4 3 2 34 34 H 1.08996 * 109.51742 * 297.68401 * 5 4 3 35 35 H 0.96993 * 120.00552 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.46757 * 59.99773 * 9 8 6 37 37 H 1.08998 * 109.46890 * 300.00426 * 9 8 6 38 38 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 43 43 H 1.08995 * 109.50682 * 62.28159 * 25 5 4 44 44 H 1.09004 * 109.49871 * 182.41025 * 25 5 4 45 45 H 1.09001 * 109.46339 * 294.16906 * 26 2 1 46 46 H 1.09004 * 109.46400 * 54.14431 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1189 0.5368 1.0144 6 6 5.6134 0.4461 0.8431 7 8 6.1469 0.9670 -0.1133 8 7 6.3569 -0.2148 1.7524 9 6 7.8098 -0.3034 1.5857 10 6 8.3995 -1.0892 2.7284 11 6 8.8032 -0.4371 3.8796 12 6 9.3443 -1.1547 4.9305 13 6 9.4773 -2.5262 4.8361 14 6 9.0783 -3.1830 3.6796 15 8 9.2134 -4.5302 3.5815 16 6 9.8516 -5.1566 4.5906 17 1 10.1564 -4.6002 5.4646 18 6 10.1166 -6.5149 4.5061 19 7 9.7458 -7.1925 3.4412 20 14 11.0015 -7.3826 5.9038 21 1 10.0051 -7.8903 6.8809 22 1 11.7874 -8.5200 5.3619 23 1 11.9153 -6.4270 6.5800 24 6 8.5359 -2.4593 2.6253 25 6 3.5181 -0.8716 1.0208 26 6 1.9952 -0.7708 1.1338 27 1 -0.3632 0.5140 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.7326 1.8608 0.9376 31 1 1.5635 1.9256 -0.8330 32 1 3.9101 2.3511 -0.1310 33 1 3.7820 0.8570 -1.0906 34 1 3.8897 1.0359 1.9559 35 1 5.9302 -0.6323 2.5168 36 1 8.2362 0.6997 1.5757 37 1 8.0376 -0.8044 0.6449 38 1 8.6955 0.6347 3.9578 39 1 9.6589 -0.6427 5.8278 40 1 9.8953 -3.0867 5.6592 41 1 9.9315 -8.1427 3.3820 42 1 8.2209 -2.9678 1.7262 43 1 3.7813 -1.3837 0.0953 44 1 3.9098 -1.4304 1.8708 45 1 1.7325 -0.2708 2.0660 46 1 1.5633 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771905999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:43 Heat of formation + Delta-G solvation = -46.086942 kcal Electronic energy + Delta-G solvation = -25860.131069 eV Core-core repulsion = 22135.786958 eV Total energy + Delta-G solvation = -3724.344111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30818 -39.18469 -38.39740 -36.81415 -34.52828 -33.80969 -32.35521 -31.20983 -30.68762 -29.17876 -27.61190 -25.88168 -25.10951 -23.51486 -23.26682 -21.73836 -20.89721 -20.71720 -19.76394 -17.97989 -17.32686 -16.78895 -16.19956 -15.65758 -15.39060 -15.33409 -15.05586 -14.83307 -14.64419 -14.41548 -13.96297 -13.76114 -13.67432 -13.52608 -13.17297 -12.78072 -12.70559 -12.60929 -12.43034 -12.11753 -11.93846 -11.68905 -11.50234 -11.40149 -11.39112 -10.95704 -10.91180 -10.84637 -10.74180 -10.67673 -10.49329 -9.73445 -9.43067 -8.97344 -8.90981 -8.64210 -8.26042 -7.35231 -6.51003 -4.10614 1.88513 2.24523 2.67622 3.08043 3.09843 3.14634 3.37544 3.61808 3.90880 4.40063 4.46535 4.53122 4.65808 4.84090 4.90420 4.98941 5.03036 5.05862 5.10853 5.19673 5.26052 5.27074 5.33731 5.45856 5.52226 5.55045 5.55488 5.67177 5.72846 5.79571 5.82835 5.93543 5.96010 6.05629 6.15201 6.23159 6.49422 6.53501 6.74222 6.77000 6.79486 6.97349 7.16659 7.24948 7.33454 7.57753 7.69494 7.93054 8.27231 8.94321 9.62767 10.66724 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.002451 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.902191 B =11420.275725 C =12449.621164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.096 4.096 5 C -0.108 4.108 6 C 0.517 3.483 7 O -0.544 6.544 8 N -0.720 5.720 9 C 0.167 3.833 10 C -0.072 4.072 11 C -0.196 4.196 12 C -0.076 4.076 13 C -0.226 4.226 14 C 0.150 3.850 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.040 3.960 19 N -0.861 5.861 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.267 1.267 24 C -0.171 4.171 25 C -0.110 4.110 26 C 0.057 3.943 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.271 0.729 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.076 0.924 45 H 0.035 0.965 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 14.436 -1.666 20.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.134 4.134 5 C -0.129 4.129 6 C 0.303 3.697 7 O -0.422 6.422 8 N -0.371 5.371 9 C 0.044 3.956 10 C -0.073 4.073 11 C -0.215 4.215 12 C -0.094 4.094 13 C -0.246 4.246 14 C 0.097 3.903 15 O -0.079 6.079 16 C -0.470 4.470 17 H 0.110 0.890 18 C -0.165 4.165 19 N -0.495 5.495 20 Si 0.766 3.234 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.192 1.192 24 C -0.191 4.191 25 C -0.148 4.148 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.237 0.763 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.081 0.919 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.866 14.163 -3.057 20.055 hybrid contribution 0.071 -0.302 2.019 2.043 sum -13.795 13.861 -1.038 19.584 Atomic orbital electron populations 1.22352 0.87205 1.02168 1.00574 1.61923 1.07585 1.13913 1.43539 1.22134 0.95532 0.89006 1.00538 1.21403 0.93094 1.00442 0.98464 1.21395 0.91627 0.98599 1.01297 1.20573 0.89069 0.77877 0.82214 1.90686 1.73963 1.46790 1.30736 1.46164 1.07897 1.55716 1.27347 1.20152 0.79128 0.99536 0.96756 1.19271 1.00363 0.92837 0.94840 1.20476 1.07754 0.98608 0.94702 1.20744 0.97487 0.93617 0.97581 1.21238 1.08943 0.94767 0.99617 1.19325 0.93096 0.85104 0.92813 1.83982 1.66194 1.13249 1.44487 1.21322 1.36490 0.92001 0.97158 0.89040 1.25297 0.97274 0.95624 0.98262 1.70032 1.43451 1.08856 1.27178 0.85711 0.79111 0.79089 0.79521 1.19844 1.20196 1.19177 1.20087 1.07683 0.92491 0.98812 1.21610 0.94529 0.94919 1.03745 1.22092 0.95054 0.98577 0.91338 0.91336 0.91282 0.95764 0.94897 0.90419 0.90783 0.90083 0.88949 0.76302 0.91026 0.90880 0.87554 0.87305 0.85473 0.91923 0.86389 0.90175 0.90551 0.94659 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.59 60.07 0.58 0.75 16 2 N -0.54 -4.83 4.91 -242.95 -1.19 -6.02 16 3 C 0.06 0.46 5.46 -3.83 -0.02 0.44 16 4 C -0.10 -0.95 4.68 -26.65 -0.12 -1.08 16 5 C -0.11 -1.07 2.59 -91.64 -0.24 -1.31 16 6 C 0.52 6.81 7.16 -10.98 -0.08 6.73 16 7 O -0.54 -9.14 15.98 5.56 0.09 -9.05 16 8 N -0.72 -9.20 5.45 -61.47 -0.34 -9.53 16 9 C 0.17 2.44 5.80 -5.19 -0.03 2.41 16 10 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 11 C -0.20 -3.16 9.70 -39.53 -0.38 -3.54 16 12 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 13 C -0.23 -4.67 9.17 -39.40 -0.36 -5.03 16 14 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 15 O -0.18 -4.86 9.76 0.05 0.00 -4.86 16 16 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 17 H 0.09 2.29 5.21 -52.49 -0.27 2.02 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 19 N -0.86 -24.79 13.67 55.48 0.76 -24.03 16 20 Si 0.94 20.05 29.55 -169.99 -5.02 15.03 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 24 C -0.17 -3.41 9.65 -39.39 -0.38 -3.79 16 25 C -0.11 -1.03 5.26 -26.65 -0.14 -1.17 16 26 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 29 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 30 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 4.56 7.95 -40.82 -0.32 4.23 16 36 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 37 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 38 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.08 0.66 7.66 -51.93 -0.40 0.26 16 45 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16 LS Contribution 376.52 15.07 5.67 5.67 Total: -1.00 -31.34 376.52 -9.41 -40.75 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.17 Total: 6.85 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -2.21 Total: -14.80 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.77 Total: -39.59 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.34 -9.41 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771905999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.336 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds