Wall clock time and date at job start Tue Mar 31 2020 12:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46843 * 110.99942 * 2 1 4 4 C 1.53040 * 109.51912 * 185.83784 * 3 2 1 5 5 C 1.53125 * 109.27967 * 300.82189 * 4 3 2 6 6 C 1.50707 * 109.51958 * 177.56121 * 5 4 3 7 7 O 1.21273 * 120.00204 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99327 * 180.02562 * 6 5 4 9 9 C 1.46508 * 119.99681 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47169 * 180.02562 * 9 8 6 11 11 C 1.38328 * 119.96224 * 270.02412 * 10 9 8 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46814 * 90.00164 * 20 18 16 22 22 H 1.48501 * 109.47378 * 210.00272 * 20 18 16 23 23 H 1.48503 * 109.47143 * 330.00397 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99807 * 10 9 8 25 25 C 1.53116 * 109.15877 * 57.65748 * 5 4 3 26 26 C 1.46850 * 110.99524 * 124.21078 * 2 1 3 27 27 H 1.08999 * 109.46484 * 59.99339 * 1 2 3 28 28 H 1.08997 * 109.47492 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46587 * 300.00286 * 1 2 3 30 30 H 1.08996 * 109.46390 * 65.82941 * 3 2 1 31 31 H 1.08998 * 109.45868 * 305.84800 * 3 2 1 32 32 H 1.09005 * 109.50468 * 180.87927 * 4 3 2 33 33 H 1.09001 * 109.53472 * 60.78427 * 4 3 2 34 34 H 1.08996 * 109.51742 * 297.68401 * 5 4 3 35 35 H 0.96993 * 120.00552 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.46757 * 59.99773 * 9 8 6 37 37 H 1.08998 * 109.46890 * 300.00426 * 9 8 6 38 38 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 39 39 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 40 40 H 1.08001 * 120.03256 * 180.31909 * 13 12 11 41 41 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 42 42 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 43 43 H 1.08995 * 109.50682 * 62.28159 * 25 5 4 44 44 H 1.09004 * 109.49871 * 182.41025 * 25 5 4 45 45 H 1.09001 * 109.46339 * 294.16906 * 26 2 1 46 46 H 1.09004 * 109.46400 * 54.14431 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3340 -0.1467 5 6 4.1189 0.5368 1.0144 6 6 5.6134 0.4461 0.8431 7 8 6.1469 0.9670 -0.1133 8 7 6.3569 -0.2148 1.7524 9 6 7.8098 -0.3034 1.5857 10 6 8.3995 -1.0892 2.7284 11 6 8.8032 -0.4371 3.8796 12 6 9.3443 -1.1547 4.9305 13 6 9.4773 -2.5262 4.8361 14 6 9.0783 -3.1830 3.6796 15 8 9.2134 -4.5302 3.5815 16 6 9.8516 -5.1566 4.5906 17 1 10.1564 -4.6002 5.4646 18 6 10.1166 -6.5149 4.5061 19 7 9.7458 -7.1925 3.4412 20 14 11.0015 -7.3826 5.9038 21 1 10.0051 -7.8903 6.8809 22 1 11.7874 -8.5200 5.3619 23 1 11.9153 -6.4270 6.5800 24 6 8.5359 -2.4593 2.6253 25 6 3.5181 -0.8716 1.0208 26 6 1.9952 -0.7708 1.1338 27 1 -0.3632 0.5140 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.7326 1.8608 0.9376 31 1 1.5635 1.9256 -0.8330 32 1 3.9101 2.3511 -0.1310 33 1 3.7820 0.8570 -1.0906 34 1 3.8897 1.0359 1.9559 35 1 5.9302 -0.6323 2.5168 36 1 8.2362 0.6997 1.5757 37 1 8.0376 -0.8044 0.6449 38 1 8.6955 0.6347 3.9578 39 1 9.6589 -0.6427 5.8278 40 1 9.8953 -3.0867 5.6592 41 1 9.9315 -8.1427 3.3820 42 1 8.2209 -2.9678 1.7262 43 1 3.7813 -1.3837 0.0953 44 1 3.9098 -1.4304 1.8708 45 1 1.7325 -0.2708 2.0660 46 1 1.5633 -1.7716 1.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771905999.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:42 Heat of formation + Delta-G solvation = -67.303916 kcal Electronic energy + Delta-G solvation = -25861.051106 eV Core-core repulsion = 22135.786958 eV Total energy + Delta-G solvation = -3725.264148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34498 -40.74964 -39.31234 -38.42070 -35.79923 -34.61049 -34.27970 -32.27720 -31.73103 -30.77129 -28.47433 -27.46025 -26.59731 -24.29029 -24.03865 -23.26405 -22.43968 -21.68247 -20.63765 -19.61610 -18.92794 -18.06351 -17.18600 -16.81947 -16.71510 -16.36095 -16.12451 -16.03920 -15.94454 -15.54411 -15.46120 -15.02173 -15.01371 -14.43756 -14.32654 -14.13520 -13.93039 -13.64228 -13.40961 -13.33454 -13.21331 -13.02883 -12.60628 -12.50319 -12.38440 -12.28141 -12.25292 -12.14382 -12.11816 -11.69012 -11.42731 -11.21690 -10.86682 -10.77643 -10.12411 -9.75421 -9.25166 -9.03792 -8.47197 -6.15776 0.38173 0.70042 1.35780 1.44540 1.53081 1.61349 2.17217 2.25601 2.85388 3.00469 3.15374 3.39847 3.59755 3.73988 3.81611 3.86724 4.08956 4.16986 4.23632 4.30457 4.36303 4.40537 4.46623 4.52422 4.56426 4.57827 4.66585 4.72343 4.73443 4.76653 4.89939 4.95070 5.01258 5.05825 5.08726 5.11611 5.17061 5.25126 5.31376 5.40968 5.61969 5.70176 5.71341 6.01414 6.13981 6.15117 6.16082 6.53336 6.97663 7.21340 7.77887 8.75925 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.002451 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.902191 B =11420.275725 C =12449.621164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.565 5.565 3 C 0.061 3.939 4 C -0.093 4.093 5 C -0.099 4.099 6 C 0.517 3.483 7 O -0.583 6.583 8 N -0.713 5.713 9 C 0.173 3.827 10 C -0.058 4.058 11 C -0.169 4.169 12 C -0.069 4.069 13 C -0.234 4.234 14 C 0.113 3.887 15 O -0.232 6.232 16 C -0.412 4.412 17 H 0.104 0.896 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.262 1.262 22 H -0.274 1.274 23 H -0.252 1.252 24 C -0.181 4.181 25 C -0.107 4.107 26 C 0.060 3.940 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.032 0.968 30 H 0.046 0.954 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.119 0.881 35 H 0.412 0.588 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.121 0.879 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 17.285 0.502 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.067 4.067 4 C -0.131 4.131 5 C -0.120 4.120 6 C 0.304 3.696 7 O -0.462 6.462 8 N -0.365 5.365 9 C 0.049 3.951 10 C -0.058 4.058 11 C -0.188 4.188 12 C -0.087 4.087 13 C -0.254 4.254 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.488 4.488 17 H 0.121 0.879 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.187 1.187 22 H -0.199 1.199 23 H -0.176 1.176 24 C -0.201 4.201 25 C -0.145 4.145 26 C -0.068 4.068 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.248 0.752 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.138 0.862 41 H 0.081 0.919 42 H 0.124 0.876 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.067 0.933 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.709 17.068 -0.865 22.548 hybrid contribution 0.240 -0.837 1.255 1.527 sum -14.468 16.231 0.389 21.747 Atomic orbital electron populations 1.22375 0.85972 1.02608 1.01228 1.61909 1.08828 1.14236 1.44011 1.22088 0.94025 0.89058 1.01517 1.21356 0.94565 1.00021 0.97207 1.21404 0.88938 0.99189 1.02480 1.21139 0.90316 0.76810 0.81294 1.90673 1.74903 1.48463 1.32210 1.46063 1.07119 1.55586 1.27711 1.20028 0.80282 0.99573 0.95189 1.19437 0.99229 0.91329 0.95848 1.20992 1.04119 1.00537 0.93109 1.21163 0.96179 0.92017 0.99332 1.21373 1.08979 0.96495 0.98540 1.19852 0.94823 0.84273 0.94805 1.83949 1.68710 1.15580 1.45622 1.21823 1.36635 0.92715 0.97659 0.87883 1.26582 0.98072 0.96210 1.01205 1.70183 1.46431 1.09241 1.30081 0.84597 0.78007 0.77763 0.75928 1.18716 1.19861 1.17567 1.20210 1.08010 0.93962 0.97950 1.21585 0.95661 0.94371 1.02929 1.22072 0.93917 0.99001 0.91831 0.90812 0.91014 0.94936 0.93581 0.89714 0.90821 0.92667 0.86355 0.75208 0.89567 0.92223 0.83415 0.83319 0.86152 0.91876 0.87592 0.92422 0.89779 0.93337 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.59 127.69 1.22 1.53 16 2 N -0.56 -9.05 4.91 -922.56 -4.53 -13.58 16 3 C 0.06 0.89 5.46 86.33 0.47 1.36 16 4 C -0.09 -1.75 4.68 30.65 0.14 -1.61 16 5 C -0.10 -1.79 2.59 -11.46 -0.03 -1.82 16 6 C 0.52 12.94 7.16 87.66 0.63 13.57 16 7 O -0.58 -19.25 15.98 -3.01 -0.05 -19.30 16 8 N -0.71 -16.84 5.45 -466.77 -2.55 -19.39 16 9 C 0.17 4.71 5.80 85.63 0.50 5.21 16 10 C -0.06 -1.81 5.25 -19.88 -0.10 -1.91 16 11 C -0.17 -4.69 9.70 22.30 0.22 -4.47 16 12 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 13 C -0.23 -9.53 9.17 22.39 0.21 -9.32 16 14 C 0.11 5.37 6.65 22.58 0.15 5.52 16 15 O -0.23 -13.62 9.76 -22.74 -0.22 -13.84 16 16 C -0.41 -23.42 9.49 67.92 0.64 -22.77 16 17 H 0.10 5.31 5.21 -2.91 -0.02 5.30 16 18 C -0.02 -1.30 5.49 84.83 0.47 -0.83 16 19 N -0.92 -56.06 13.67 21.61 0.30 -55.76 16 20 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 21 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 24 C -0.18 -7.38 9.65 22.39 0.22 -7.16 16 25 C -0.11 -1.88 5.26 30.65 0.16 -1.72 16 26 C 0.06 0.89 5.46 86.33 0.47 1.36 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 1.12 8.12 -2.39 -0.02 1.10 16 32 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.05 1.32 8.04 -2.39 -0.02 1.30 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.41 8.32 7.95 -92.71 -0.74 7.58 16 36 H 0.09 2.17 8.09 -2.38 -0.02 2.15 16 37 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 38 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 40 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.33 7.66 -2.38 -0.02 1.31 16 45 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.08 1.19 8.09 -2.38 -0.02 1.17 16 Total: -1.00 -73.12 376.52 0.80 -72.32 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.24 Total: 30.50 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 5.58 Total: -24.98 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -6.78 Total: -88.73 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -0.27 Total: -33.14 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -73.12 0.80 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771905999.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.012 kcal (2) G-P(sol) polarization free energy of solvation -73.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds