Wall clock time and date at job start Tue Mar 31 2020 12:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35908 * 116.99975 * 2 1 4 4 C 1.38725 * 120.05413 * 180.02562 * 3 2 1 5 5 C 1.38146 * 119.94222 * 180.02562 * 4 3 2 6 6 C 1.38271 * 120.05713 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94387 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47437 * 89.99599 * 7 6 5 9 9 O 1.21285 * 119.99920 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00165 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00450 * 180.02562 * 10 8 7 12 12 C 1.53352 * 109.40649 * 275.12229 * 11 10 8 13 13 C 1.53190 * 109.15070 * 178.68036 * 12 11 10 14 14 N 1.46925 * 108.89356 * 54.57285 * 13 12 11 15 15 C 1.36935 * 120.62758 * 126.30089 * 14 13 12 16 16 H 1.08001 * 120.00088 * 332.62829 * 15 14 13 17 17 C 1.38817 * 119.99782 * 152.62208 * 15 14 13 18 18 N 1.31618 * 119.99923 * 159.36242 * 17 15 14 19 19 Si 1.86801 * 120.00195 * 339.36341 * 17 15 14 20 20 H 1.48501 * 109.47054 * 92.89675 * 19 17 15 21 21 H 1.48497 * 109.47324 * 212.90179 * 19 17 15 22 22 H 1.48501 * 109.46722 * 332.89954 * 19 17 15 23 23 C 1.46926 * 118.73822 * 306.31916 * 14 13 12 24 24 C 1.53037 * 109.46373 * 154.99584 * 11 10 8 25 25 C 1.38264 * 120.10693 * 0.24785 * 6 5 4 26 26 C 1.38146 * 120.05927 * 359.45410 * 25 6 5 27 27 H 1.08998 * 109.46869 * 60.00131 * 1 2 3 28 28 H 1.08992 * 109.47085 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47075 * 300.00542 * 1 2 3 30 30 H 1.07998 * 120.02891 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.97099 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47115 * 329.99370 * 7 6 5 33 33 H 1.09006 * 109.47038 * 209.99702 * 7 6 5 34 34 H 0.97009 * 119.99857 * 359.97438 * 10 8 7 35 35 H 1.09008 * 109.45552 * 35.02254 * 11 10 8 36 36 H 1.09004 * 109.68561 * 58.70788 * 12 11 10 37 37 H 1.09004 * 109.47287 * 298.51449 * 12 11 10 38 38 H 1.09004 * 109.58215 * 294.71811 * 13 12 11 39 39 H 1.08997 * 109.58828 * 174.43980 * 13 12 11 40 40 H 0.96999 * 119.99917 * 180.02562 * 18 17 15 41 41 H 1.09002 * 109.58248 * 173.39705 * 23 14 13 42 42 H 1.08994 * 109.58922 * 293.68210 * 23 14 13 43 43 H 1.09003 * 109.49698 * 61.42482 * 24 11 10 44 44 H 1.08994 * 109.52761 * 301.33896 * 24 11 10 45 45 H 1.08001 * 119.96581 * 179.71154 * 25 6 5 46 46 H 1.07999 * 120.02780 * 180.24748 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5170 0.0000 6 6 3.3019 3.6759 0.0016 7 6 3.9861 5.0186 0.0028 8 6 4.2136 5.4677 -1.4176 9 8 3.8559 4.7663 -2.3401 10 7 4.8146 6.6488 -1.6628 11 6 5.0354 7.0858 -3.0436 12 6 6.3407 6.4757 -3.5686 13 6 6.5489 6.9095 -5.0230 14 7 6.4947 8.3760 -5.0944 15 6 7.5152 9.0847 -5.6701 16 1 8.5170 8.6810 -5.6756 17 6 7.2622 10.3218 -6.2467 18 7 8.2466 11.1760 -6.4302 19 14 5.5247 10.7743 -6.7622 20 1 4.8527 11.4997 -5.6543 21 1 5.5758 11.6443 -7.9645 22 1 4.7643 9.5383 -7.0776 23 6 5.3248 9.0677 -4.5361 24 6 5.1283 8.6127 -3.0866 25 6 1.9211 3.6048 0.0079 26 6 1.2915 2.3752 0.0011 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 4.0208 0.3800 -0.0005 31 1 5.1345 2.5751 0.0000 32 1 4.9442 4.9377 0.5162 33 1 3.3582 5.7458 0.5177 34 1 5.1004 7.2100 -0.9250 35 1 4.2042 6.7549 -3.6664 36 1 6.2843 5.3883 -3.5177 37 1 7.1755 6.8260 -2.9615 38 1 5.7631 6.4840 -5.6472 39 1 7.5212 6.5623 -5.3723 40 1 8.0697 12.0406 -6.8328 41 1 5.4905 10.1448 -4.5618 42 1 4.4398 8.8202 -5.1222 43 1 5.9744 8.9428 -2.4838 44 1 4.2092 9.0450 -2.6911 45 1 1.3343 4.5114 0.0138 46 1 0.2129 2.3202 0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823991.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:26 Heat of formation + Delta-G solvation = -27.666490 kcal Electronic energy + Delta-G solvation = -26146.852638 eV Core-core repulsion = 22423.307298 eV Total energy + Delta-G solvation = -3723.545340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.50290 -39.71666 -38.02181 -37.28112 -34.52461 -32.64689 -31.99608 -31.27456 -30.44656 -30.09237 -28.26976 -26.75235 -24.78071 -22.97175 -22.89048 -22.15211 -21.42107 -20.21886 -19.56389 -18.41020 -17.23229 -16.64746 -16.56917 -16.20277 -16.00155 -15.44068 -15.11442 -14.85350 -14.46256 -14.15803 -13.97269 -13.79521 -13.76052 -13.65485 -13.12730 -12.93001 -12.77666 -12.42786 -12.33977 -12.04086 -12.03772 -11.78453 -11.70697 -11.28736 -11.02692 -10.98038 -10.83115 -10.55916 -10.27791 -10.15491 -9.87977 -9.65775 -9.46481 -9.17830 -8.79049 -8.63949 -8.29831 -6.99565 -5.95611 -3.31343 1.16266 1.19751 2.73158 2.99756 3.22894 3.30273 3.48463 3.51969 3.67568 4.49367 4.52141 4.53021 4.64660 4.75889 4.81199 4.90440 4.96892 4.99920 5.10829 5.13750 5.21370 5.26529 5.33376 5.37148 5.40343 5.49421 5.67158 5.81773 5.82343 6.03164 6.03688 6.11640 6.12826 6.17024 6.33827 6.40027 6.41011 6.53960 6.57414 6.64590 6.65685 6.76553 6.92467 7.13760 7.63874 7.95512 8.32312 8.34894 8.93305 9.71257 10.09073 11.20339 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.031032 B = 0.002300 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.075445 B =12168.992384 C =12280.458037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.123 3.877 4 C -0.150 4.150 5 C -0.065 4.065 6 C -0.099 4.099 7 C -0.099 4.099 8 C 0.510 3.490 9 O -0.533 6.533 10 N -0.727 5.727 11 C 0.151 3.849 12 C -0.140 4.140 13 C 0.150 3.850 14 N -0.606 5.606 15 C -0.258 4.258 16 H 0.086 0.914 17 C 0.022 3.978 18 N -0.908 5.908 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.303 1.303 22 H -0.270 1.270 23 C 0.129 3.871 24 C -0.140 4.140 25 C -0.065 4.065 26 C -0.206 4.206 27 H 0.055 0.945 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.397 0.603 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.065 0.935 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.122 0.878 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.969 -16.759 18.423 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.168 4.168 5 C -0.083 4.083 6 C -0.099 4.099 7 C -0.139 4.139 8 C 0.295 3.705 9 O -0.409 6.409 10 N -0.377 5.377 11 C 0.047 3.953 12 C -0.180 4.180 13 C 0.024 3.976 14 N -0.330 5.330 15 C -0.387 4.387 16 H 0.104 0.896 17 C -0.177 4.177 18 N -0.551 5.551 19 Si 0.712 3.288 20 H -0.217 1.217 21 H -0.231 1.231 22 H -0.195 1.195 23 C 0.003 3.997 24 C -0.180 4.180 25 C -0.084 4.084 26 C -0.225 4.225 27 H 0.074 0.926 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.140 0.860 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.075 -17.309 17.650 28.447 hybrid contribution -1.080 0.878 0.003 1.392 sum -15.156 -16.430 17.653 28.483 Atomic orbital electron populations 1.23042 0.78479 1.03843 1.01386 1.86061 1.21338 1.27103 1.88840 1.19029 0.92403 0.84054 0.96712 1.20367 0.91341 0.98582 1.06543 1.20802 0.99755 0.90984 0.96746 1.19185 0.93431 0.93805 1.03522 1.20636 1.02643 0.95488 0.95170 1.20535 0.77568 0.81291 0.91093 1.90731 1.50311 1.53693 1.46128 1.46305 1.61071 1.20853 1.09518 1.21033 0.98409 0.94478 0.81355 1.22422 0.96747 0.99459 0.99409 1.20895 0.99871 0.84375 0.92496 1.44401 1.20737 1.00771 1.67091 1.18930 0.88400 1.00531 1.30806 0.89640 1.25291 0.96851 0.96733 0.98808 1.69835 1.31555 1.07202 1.46538 0.86969 0.86327 0.77920 0.77572 1.21656 1.23113 1.19504 1.21303 0.90212 0.97705 0.90518 1.22331 1.01271 0.93614 1.00748 1.20753 0.93815 0.97056 0.96741 1.21155 0.99883 0.92301 1.09175 0.92592 0.88313 0.92720 0.85227 0.85410 0.88052 0.88219 0.76975 0.90052 0.92266 0.91877 0.95751 0.91626 0.92779 0.90538 0.95518 0.91140 0.92301 0.85965 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.27 10.50 -19.45 -0.20 -3.47 16 3 C 0.12 1.35 6.69 -39.22 -0.26 1.09 16 4 C -0.15 -1.62 9.99 -39.44 -0.39 -2.01 16 5 C -0.06 -0.68 9.69 -39.60 -0.38 -1.07 16 6 C -0.10 -1.05 4.37 -104.60 -0.46 -1.51 16 7 C -0.10 -0.89 5.83 -29.04 -0.17 -1.05 16 8 C 0.51 6.63 7.79 -10.99 -0.09 6.54 16 9 O -0.53 -9.32 15.70 5.55 0.09 -9.23 16 10 N -0.73 -9.01 5.08 -53.61 -0.27 -9.28 16 11 C 0.15 2.41 2.42 -67.73 -0.16 2.24 16 12 C -0.14 -2.41 5.68 -26.45 -0.15 -2.56 16 13 C 0.15 3.04 6.50 -3.71 -0.02 3.02 16 14 N -0.61 -14.37 2.77 -172.32 -0.48 -14.84 16 15 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.63 5.23 -17.43 -0.09 0.54 16 18 N -0.91 -27.70 13.97 55.49 0.78 -26.93 16 19 Si 0.88 22.31 24.34 -169.99 -4.14 18.17 16 20 H -0.29 -6.97 6.62 56.52 0.37 -6.60 16 21 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 22 H -0.27 -6.78 6.64 56.52 0.38 -6.40 16 23 C 0.13 2.76 4.21 -3.71 -0.02 2.75 16 24 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 25 C -0.07 -0.68 9.69 -39.61 -0.38 -1.06 16 26 C -0.21 -2.09 9.04 -39.43 -0.36 -2.44 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.40 3.73 8.60 -40.82 -0.35 3.38 16 35 H 0.08 1.46 7.58 -51.92 -0.39 1.07 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.08 1.78 4.50 -51.93 -0.23 1.55 16 42 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.13 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -34.50 368.10 -8.07 -42.56 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.14 Total: 1.64 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -2.24 Total: -4.17 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: 0.03 Total: -51.05 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.12 Total: -12.70 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.50 -8.07 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823991.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -34.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds