Wall clock time and date at job start Tue Mar 31 2020 11:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46500 * 120.00269 * 2 1
4 4 C 1.53002 * 109.46682 * 269.99920 * 3 2 1
5 5 O 1.42898 * 109.46983 * 65.00133 * 4 3 2
6 6 C 1.42900 * 113.99793 * 179.97438 * 5 4 3
7 7 C 1.53001 * 109.47275 * 179.97438 * 6 5 4
8 8 C 1.53001 * 117.49990 * 243.62566 * 7 6 5
9 9 C 1.52998 * 60.00024 * 252.50769 * 8 7 6
10 10 C 1.34781 * 119.99819 * 179.97438 * 2 1 3
11 11 O 1.21578 * 120.00067 * 180.02562 * 10 2 1
12 12 N 1.34774 * 119.99958 * 359.97438 * 10 2 1
13 13 C 1.39236 * 120.00166 * 176.72963 * 12 10 2
14 14 C 1.39487 * 119.83708 * 217.49954 * 13 12 10
15 15 C 1.36369 * 120.16832 * 179.75736 * 14 13 12
16 16 C 1.40872 * 119.83002 * 0.53624 * 15 14 13
17 17 C 1.41155 * 120.16384 * 179.69407 * 16 15 14
18 18 H 1.07998 * 119.99817 * 157.83369 * 17 16 15
19 19 C 1.39891 * 120.00254 * 337.83995 * 17 16 15
20 20 N 1.30881 * 119.99819 * 327.72760 * 19 17 16
21 21 Si 1.86805 * 120.00325 * 147.72640 * 19 17 16
22 22 H 1.48496 * 109.47150 * 94.98628 * 21 19 17
23 23 H 1.48502 * 109.46867 * 214.98565 * 21 19 17
24 24 H 1.48498 * 109.46757 * 334.98689 * 21 19 17
25 25 C 1.40865 * 119.67332 * 359.72140 * 16 15 14
26 26 C 1.36375 * 119.82645 * 359.97438 * 25 16 15
27 27 H 1.08994 * 109.47456 * 90.00382 * 1 2 3
28 28 H 1.09005 * 109.47659 * 210.00522 * 1 2 3
29 29 H 1.09002 * 109.47170 * 330.00164 * 1 2 3
30 30 H 1.09003 * 109.47008 * 150.00268 * 3 2 1
31 31 H 1.09000 * 109.47393 * 29.99903 * 3 2 1
32 32 H 1.09001 * 109.47558 * 304.99836 * 4 3 2
33 33 H 1.09002 * 109.46650 * 184.99905 * 4 3 2
34 34 H 1.09004 * 109.47182 * 60.00308 * 6 5 4
35 35 H 1.09003 * 109.47441 * 300.00088 * 6 5 4
36 36 H 1.09003 * 115.54784 * 29.32927 * 7 6 5
37 37 H 1.08998 * 117.49690 * 359.97438 * 8 7 6
38 38 H 1.09001 * 117.50301 * 145.01784 * 8 7 6
39 39 H 1.08999 * 117.49947 * 252.50934 * 9 8 7
40 40 H 1.08999 * 117.49753 * 107.48640 * 9 8 7
41 41 H 0.97003 * 119.99851 * 356.73145 * 12 10 2
42 42 H 1.07996 * 119.91024 * 359.97438 * 14 13 12
43 43 H 1.08001 * 120.08336 * 180.25395 * 15 14 13
44 44 H 0.97001 * 120.00109 * 179.97438 * 20 19 17
45 45 H 1.08002 * 120.08677 * 179.97438 * 25 16 15
46 46 H 1.07997 * 119.91500 * 180.02562 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7102 -1.4426
5 8 1.2060 1.9934 -2.0814
6 6 1.3324 2.4173 -3.4402
7 6 -0.0566 2.6904 -4.0206
8 6 -0.5216 1.8115 -5.1835
9 6 -0.1300 3.2689 -5.4351
10 6 2.1388 -1.1673 0.0005
11 8 3.3546 -1.1673 0.0010
12 7 1.4649 -2.3344 0.0016
13 6 2.1593 -3.5393 -0.0667
14 6 1.6380 -4.5997 -0.8081
15 6 2.3149 -5.7812 -0.8835
16 6 3.5379 -5.9329 -0.2011
17 6 4.2411 -7.1549 -0.2692
18 1 5.3024 -7.1789 -0.0705
19 6 3.5635 -8.3348 -0.5941
20 7 2.3150 -8.4927 -0.2345
21 14 4.4405 -9.6852 -1.5412
22 1 4.9902 -10.6819 -0.5875
23 1 3.4795 -10.3527 -2.4556
24 1 5.5490 -9.0944 -2.3333
25 6 4.0553 -4.8594 0.5499
26 6 3.3701 -3.6819 0.6110
27 1 -0.3634 -0.0001 -1.0276
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 3.1500 1.1383 0.5138
31 1 1.6085 2.0284 0.5138
32 1 2.9642 0.9129 -1.9816
33 1 3.0733 2.6062 -1.4439
34 1 1.8210 1.6348 -4.0209
35 1 1.9298 3.3280 -3.4827
36 1 -0.8098 3.0169 -3.3036
37 1 0.1622 1.0390 -5.5353
38 1 -1.5810 1.5595 -5.2317
39 1 -0.9317 3.9758 -5.6488
40 1 0.8113 3.4550 -5.9522
41 1 0.4961 -2.3350 0.0498
42 1 0.6978 -4.4835 -1.3264
43 1 1.9120 -6.5999 -1.4613
44 1 1.8450 -9.3106 -0.4601
45 1 4.9921 -4.9686 1.0761
46 1 3.7657 -2.8577 1.1861
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000130339274.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:57:57
Heat of formation + Delta-G solvation = -20.264068 kcal
Electronic energy + Delta-G solvation = -25996.957413 eV
Core-core repulsion = 22273.733067 eV
Total energy + Delta-G solvation = -3723.224347 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.06114 -38.62428 -37.53740 -36.75503 -35.12609 -34.41929 -32.98105 -30.38664
-29.45717 -28.73194 -27.16232 -26.21160 -24.79994 -22.99299 -22.67808 -21.39363
-20.92777 -20.57248 -19.23229 -17.95963 -17.29427 -16.90018 -16.67593 -16.12995
-15.65624 -15.39489 -15.16691 -14.65331 -14.51813 -13.96314 -13.86244 -13.56440
-13.16812 -12.81342 -12.79535 -12.61943 -12.28726 -12.16835 -11.99045 -11.91957
-11.84269 -11.63153 -11.36656 -11.17830 -11.10920 -10.88091 -10.73748 -10.48851
-10.47679 -10.12515 -9.67854 -9.66488 -9.50192 -9.07144 -8.65387 -8.46021
-7.48188 -7.06654 -6.81451 -4.20957 2.71010 2.98834 3.07275 3.09098
3.16147 3.22968 3.27116 3.61932 3.77386 3.93279 4.41774 4.51290
4.56963 4.58310 4.74593 5.00287 5.04557 5.08333 5.18791 5.20547
5.29384 5.33591 5.38329 5.53546 5.58546 5.59492 5.73333 5.78771
5.79375 5.81796 5.90629 6.24821 6.48139 6.59171 6.84348 6.94867
7.06081 7.07545 7.16818 7.31170 7.37660 7.65314 7.91762 8.00818
8.09212 8.32625 8.53109 8.61722 8.90141 8.97263 9.19462 10.07978
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.016847 B = 0.002526 C = 0.002346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1661.644683 B =11080.512526 C =11933.788558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.633 5.633
3 C 0.142 3.858
4 C 0.044 3.956
5 O -0.381 6.381
6 C 0.093 3.907
7 C -0.151 4.151
8 C -0.177 4.177
9 C -0.176 4.176
10 C 0.696 3.304
11 O -0.582 6.582
12 N -0.664 5.664
13 C 0.000 4.000
14 C -0.105 4.105
15 C -0.170 4.170
16 C 0.111 3.889
17 C -0.467 4.467
18 H 0.081 0.919
19 C 0.088 3.912
20 N -0.772 5.772
21 Si 0.895 3.105
22 H -0.270 1.270
23 H -0.275 1.275
24 H -0.258 1.258
25 C -0.223 4.223
26 C -0.067 4.067
27 H 0.056 0.944
28 H 0.060 0.940
29 H 0.068 0.932
30 H 0.099 0.901
31 H 0.080 0.920
32 H 0.056 0.944
33 H 0.055 0.945
34 H 0.049 0.951
35 H 0.050 0.950
36 H 0.112 0.888
37 H 0.096 0.904
38 H 0.096 0.904
39 H 0.097 0.903
40 H 0.094 0.906
41 H 0.390 0.610
42 H 0.088 0.912
43 H 0.107 0.893
44 H 0.282 0.718
45 H 0.094 0.906
46 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.440 19.028 -5.117 21.062
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.372 5.372
3 C 0.018 3.982
4 C -0.034 4.034
5 O -0.301 6.301
6 C 0.017 3.983
7 C -0.169 4.169
8 C -0.214 4.214
9 C -0.213 4.213
10 C 0.399 3.601
11 O -0.460 6.460
12 N -0.312 5.312
13 C -0.093 4.093
14 C -0.125 4.125
15 C -0.190 4.190
16 C 0.108 3.892
17 C -0.495 4.495
18 H 0.099 0.901
19 C -0.133 4.133
20 N -0.395 5.395
21 Si 0.718 3.282
22 H -0.195 1.195
23 H -0.200 1.200
24 H -0.181 1.181
25 C -0.243 4.243
26 C -0.087 4.087
27 H 0.075 0.925
28 H 0.079 0.921
29 H 0.087 0.913
30 H 0.117 0.883
31 H 0.099 0.901
32 H 0.075 0.925
33 H 0.073 0.927
34 H 0.067 0.933
35 H 0.068 0.932
36 H 0.130 0.870
37 H 0.114 0.886
38 H 0.114 0.886
39 H 0.115 0.885
40 H 0.113 0.887
41 H 0.225 0.775
42 H 0.106 0.894
43 H 0.125 0.875
44 H 0.093 0.907
45 H 0.112 0.888
46 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -6.944 18.851 -5.002 20.703
hybrid contribution -0.111 -0.637 -0.647 0.915
sum -7.056 18.215 -5.650 20.334
Atomic orbital electron populations
1.21619 0.79966 1.01986 1.01806 1.46912 1.06289 1.04619 1.79346
1.21283 0.98518 0.84184 0.94258 1.23060 0.86035 0.99319 0.94946
1.87851 1.29903 1.87719 1.24601 1.21957 0.94966 0.98086 0.83338
1.22125 0.98378 1.05108 0.91309 1.23077 1.02286 0.93714 1.02306
1.22969 1.03342 0.96977 0.98035 1.15966 0.85462 0.80317 0.78392
1.90885 1.11460 1.85821 1.57821 1.42216 1.08871 1.03666 1.76401
1.16885 0.98003 0.85037 1.09344 1.20151 0.99124 0.94132 0.99111
1.20598 0.98068 0.96020 1.04306 1.17583 0.91090 0.92302 0.88198
1.19472 0.96470 0.91379 1.42223 0.90110 1.25919 0.94518 0.99657
0.93197 1.69956 1.11572 1.26424 1.31567 0.86535 0.80818 0.80288
0.80561 1.19522 1.19950 1.18149 1.20601 1.02186 0.94940 1.06547
1.20333 0.94341 0.96488 0.97537 0.92502 0.92098 0.91318 0.88302
0.90150 0.92520 0.92715 0.93326 0.93196 0.86951 0.88596 0.88586
0.88478 0.88744 0.77474 0.89419 0.87531 0.90713 0.88816 0.87880
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.97 9.88 59.84 0.59 1.56 16
2 N -0.63 -8.94 2.84 -187.35 -0.53 -9.48 16
3 C 0.14 1.68 5.86 -4.04 -0.02 1.66 16
4 C 0.04 0.51 6.28 37.16 0.23 0.75 16
5 O -0.38 -4.42 9.90 -35.23 -0.35 -4.77 16
6 C 0.09 0.92 6.22 37.16 0.23 1.15 16
7 C -0.15 -1.32 6.06 -90.62 -0.55 -1.87 16
8 C -0.18 -1.46 10.18 -26.73 -0.27 -1.73 16
9 C -0.18 -1.26 10.25 -26.73 -0.27 -1.53 16
10 C 0.70 13.12 8.09 -86.92 -0.70 12.42 16
11 O -0.58 -13.12 13.53 5.30 0.07 -13.05 16
12 N -0.66 -12.63 5.17 -14.10 -0.07 -12.71 16
13 C 0.00 -0.01 6.25 -83.57 -0.52 -0.53 16
14 C -0.10 -2.47 9.90 -39.79 -0.39 -2.87 16
15 C -0.17 -4.44 8.74 -39.26 -0.34 -4.79 16
16 C 0.11 3.03 5.57 -106.80 -0.59 2.44 16
17 C -0.47 -12.58 8.94 -37.86 -0.34 -12.92 16
18 H 0.08 2.11 8.01 -52.49 -0.42 1.69 16
19 C 0.09 2.22 4.77 -17.34 -0.08 2.13 16
20 N -0.77 -19.79 11.78 55.54 0.65 -19.13 16
21 Si 0.89 18.50 29.66 -169.99 -5.04 13.46 16
22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16
23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16
24 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16
25 C -0.22 -5.82 9.74 -39.26 -0.38 -6.21 16
26 C -0.07 -1.67 8.59 -39.79 -0.34 -2.01 16
27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
28 H 0.06 0.61 6.32 -51.93 -0.33 0.28 16
29 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16
30 H 0.10 1.26 7.42 -51.93 -0.39 0.87 16
31 H 0.08 0.75 7.89 -51.93 -0.41 0.34 16
32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.05 0.51 7.87 -51.93 -0.41 0.10 16
35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16
37 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16
38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
41 H 0.39 6.12 6.52 -40.82 -0.27 5.85 16
42 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16
43 H 0.11 2.81 6.53 -52.49 -0.34 2.47 16
44 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16
45 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16
46 H 0.10 2.55 6.44 -52.49 -0.34 2.22 16
LS Contribution 382.00 15.07 5.76 5.76
Total: -1.00 -31.29 382.00 -10.37 -41.65
By element:
Atomic # 1 Polarization: 17.70 SS G_CDS: -7.09 Total: 10.61 kcal
Atomic # 6 Polarization: -8.58 SS G_CDS: -3.77 Total: -12.35 kcal
Atomic # 7 Polarization: -41.36 SS G_CDS: 0.05 Total: -41.31 kcal
Atomic # 8 Polarization: -17.55 SS G_CDS: -0.28 Total: -17.82 kcal
Atomic # 14 Polarization: 18.50 SS G_CDS: -5.04 Total: 13.46 kcal
Total LS contribution 5.76 Total: 5.76 kcal
Total: -31.29 -10.37 -41.65 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130339274.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.389 kcal
(2) G-P(sol) polarization free energy of solvation -31.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.897 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.264 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds