Wall clock time and date at job start Tue Mar 31 2020 11:57:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.46500 * 120.00269 * 2 1
4 4 C 1.53002 * 109.46682 * 269.99920 * 3 2 1
5 5 O 1.42898 * 109.46983 * 65.00133 * 4 3 2
6 6 C 1.42900 * 113.99793 * 179.97438 * 5 4 3
7 7 C 1.53001 * 109.47275 * 179.97438 * 6 5 4
8 8 C 1.53001 * 117.49990 * 243.62566 * 7 6 5
9 9 C 1.52998 * 60.00024 * 252.50769 * 8 7 6
10 10 C 1.34781 * 119.99819 * 179.97438 * 2 1 3
11 11 O 1.21578 * 120.00067 * 180.02562 * 10 2 1
12 12 N 1.34774 * 119.99958 * 359.97438 * 10 2 1
13 13 C 1.39236 * 120.00166 * 176.72963 * 12 10 2
14 14 C 1.39487 * 119.83708 * 217.49954 * 13 12 10
15 15 C 1.36369 * 120.16832 * 179.75736 * 14 13 12
16 16 C 1.40872 * 119.83002 * 0.53624 * 15 14 13
17 17 C 1.41155 * 120.16384 * 179.69407 * 16 15 14
18 18 H 1.07998 * 119.99817 * 157.83369 * 17 16 15
19 19 C 1.39891 * 120.00254 * 337.83995 * 17 16 15
20 20 N 1.30881 * 119.99819 * 327.72760 * 19 17 16
21 21 Si 1.86805 * 120.00325 * 147.72640 * 19 17 16
22 22 H 1.48496 * 109.47150 * 94.98628 * 21 19 17
23 23 H 1.48502 * 109.46867 * 214.98565 * 21 19 17
24 24 H 1.48498 * 109.46757 * 334.98689 * 21 19 17
25 25 C 1.40865 * 119.67332 * 359.72140 * 16 15 14
26 26 C 1.36375 * 119.82645 * 359.97438 * 25 16 15
27 27 H 1.08994 * 109.47456 * 90.00382 * 1 2 3
28 28 H 1.09005 * 109.47659 * 210.00522 * 1 2 3
29 29 H 1.09002 * 109.47170 * 330.00164 * 1 2 3
30 30 H 1.09003 * 109.47008 * 150.00268 * 3 2 1
31 31 H 1.09000 * 109.47393 * 29.99903 * 3 2 1
32 32 H 1.09001 * 109.47558 * 304.99836 * 4 3 2
33 33 H 1.09002 * 109.46650 * 184.99905 * 4 3 2
34 34 H 1.09004 * 109.47182 * 60.00308 * 6 5 4
35 35 H 1.09003 * 109.47441 * 300.00088 * 6 5 4
36 36 H 1.09003 * 115.54784 * 29.32927 * 7 6 5
37 37 H 1.08998 * 117.49690 * 359.97438 * 8 7 6
38 38 H 1.09001 * 117.50301 * 145.01784 * 8 7 6
39 39 H 1.08999 * 117.49947 * 252.50934 * 9 8 7
40 40 H 1.08999 * 117.49753 * 107.48640 * 9 8 7
41 41 H 0.97003 * 119.99851 * 356.73145 * 12 10 2
42 42 H 1.07996 * 119.91024 * 359.97438 * 14 13 12
43 43 H 1.08001 * 120.08336 * 180.25395 * 15 14 13
44 44 H 0.97001 * 120.00109 * 179.97438 * 20 19 17
45 45 H 1.08002 * 120.08677 * 179.97438 * 25 16 15
46 46 H 1.07997 * 119.91500 * 180.02562 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4525 1.7102 -1.4426
5 8 1.2060 1.9934 -2.0814
6 6 1.3324 2.4173 -3.4402
7 6 -0.0566 2.6904 -4.0206
8 6 -0.5216 1.8115 -5.1835
9 6 -0.1300 3.2689 -5.4351
10 6 2.1388 -1.1673 0.0005
11 8 3.3546 -1.1673 0.0010
12 7 1.4649 -2.3344 0.0016
13 6 2.1593 -3.5393 -0.0667
14 6 1.6380 -4.5997 -0.8081
15 6 2.3149 -5.7812 -0.8835
16 6 3.5379 -5.9329 -0.2011
17 6 4.2411 -7.1549 -0.2692
18 1 5.3024 -7.1789 -0.0705
19 6 3.5635 -8.3348 -0.5941
20 7 2.3150 -8.4927 -0.2345
21 14 4.4405 -9.6852 -1.5412
22 1 4.9902 -10.6819 -0.5875
23 1 3.4795 -10.3527 -2.4556
24 1 5.5490 -9.0944 -2.3333
25 6 4.0553 -4.8594 0.5499
26 6 3.3701 -3.6819 0.6110
27 1 -0.3634 -0.0001 -1.0276
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3633 0.8900 0.5138
30 1 3.1500 1.1383 0.5138
31 1 1.6085 2.0284 0.5138
32 1 2.9642 0.9129 -1.9816
33 1 3.0733 2.6062 -1.4439
34 1 1.8210 1.6348 -4.0209
35 1 1.9298 3.3280 -3.4827
36 1 -0.8098 3.0169 -3.3036
37 1 0.1622 1.0390 -5.5353
38 1 -1.5810 1.5595 -5.2317
39 1 -0.9317 3.9758 -5.6488
40 1 0.8113 3.4550 -5.9522
41 1 0.4961 -2.3350 0.0498
42 1 0.6978 -4.4835 -1.3264
43 1 1.9120 -6.5999 -1.4613
44 1 1.8450 -9.3106 -0.4601
45 1 4.9921 -4.9686 1.0761
46 1 3.7657 -2.8577 1.1861
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000130339274.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:57:57
Heat of formation + Delta-G solvation = -37.409678 kcal
Electronic energy + Delta-G solvation = -25997.700903 eV
Core-core repulsion = 22273.733067 eV
Total energy + Delta-G solvation = -3723.967836 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.52794 -39.60231 -39.12916 -37.65022 -36.39382 -36.14468 -34.76017 -31.66423
-31.33136 -30.42721 -27.98783 -27.40965 -26.44421 -24.22817 -23.27730 -23.19776
-22.41673 -21.59465 -20.72631 -19.37740 -19.15103 -18.11245 -17.76333 -17.25129
-17.03076 -16.68304 -16.49113 -15.82161 -15.72259 -15.49253 -15.18483 -14.84978
-14.51975 -14.35324 -13.97666 -13.90835 -13.80692 -13.65971 -13.33718 -13.18910
-13.01108 -12.81409 -12.64257 -12.47542 -12.39067 -12.31367 -11.98009 -11.89576
-11.57389 -11.35778 -11.25710 -11.17652 -10.90040 -10.50421 -10.45502 -9.66621
-9.46442 -8.95760 -8.68925 -6.21021 0.87914 1.14764 1.38259 1.45422
1.56488 1.74383 2.18075 2.21842 2.53073 2.68149 2.94670 3.11062
3.72316 3.84558 3.93850 4.06095 4.09421 4.19246 4.31391 4.32998
4.38622 4.39617 4.51008 4.54810 4.64035 4.65709 4.69910 4.75686
4.85561 4.90621 4.96678 4.99605 5.11262 5.17618 5.20931 5.23621
5.28295 5.46500 5.55155 5.65334 5.79067 6.04161 6.11756 6.14586
6.23302 6.38150 6.63700 6.90887 7.01702 7.05225 7.67199 8.22613
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.016847 B = 0.002526 C = 0.002346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1661.644683 B =11080.512526 C =11933.788558
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.085 3.915
2 N -0.623 5.623
3 C 0.136 3.864
4 C 0.050 3.950
5 O -0.388 6.388
6 C 0.090 3.910
7 C -0.160 4.160
8 C -0.188 4.188
9 C -0.161 4.161
10 C 0.691 3.309
11 O -0.625 6.625
12 N -0.660 5.660
13 C 0.013 3.987
14 C -0.103 4.103
15 C -0.187 4.187
16 C 0.082 3.918
17 C -0.506 4.506
18 H 0.074 0.926
19 C 0.052 3.948
20 N -0.800 5.800
21 Si 0.971 3.029
22 H -0.259 1.259
23 H -0.261 1.261
24 H -0.262 1.262
25 C -0.243 4.243
26 C -0.076 4.076
27 H 0.057 0.943
28 H 0.069 0.931
29 H 0.098 0.902
30 H 0.087 0.913
31 H 0.116 0.884
32 H 0.023 0.977
33 H 0.080 0.920
34 H 0.035 0.965
35 H 0.064 0.936
36 H 0.114 0.886
37 H 0.086 0.914
38 H 0.103 0.897
39 H 0.112 0.888
40 H 0.100 0.900
41 H 0.409 0.591
42 H 0.120 0.880
43 H 0.099 0.901
44 H 0.294 0.706
45 H 0.092 0.908
46 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.134 20.353 -5.905 23.077
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 N -0.360 5.360
3 C 0.013 3.987
4 C -0.028 4.028
5 O -0.308 6.308
6 C 0.013 3.987
7 C -0.178 4.178
8 C -0.225 4.225
9 C -0.198 4.198
10 C 0.394 3.606
11 O -0.506 6.506
12 N -0.309 5.309
13 C -0.081 4.081
14 C -0.123 4.123
15 C -0.207 4.207
16 C 0.080 3.920
17 C -0.534 4.534
18 H 0.092 0.908
19 C -0.168 4.168
20 N -0.423 5.423
21 Si 0.791 3.209
22 H -0.184 1.184
23 H -0.185 1.185
24 H -0.186 1.186
25 C -0.263 4.263
26 C -0.097 4.097
27 H 0.076 0.924
28 H 0.087 0.913
29 H 0.116 0.884
30 H 0.105 0.895
31 H 0.134 0.866
32 H 0.041 0.959
33 H 0.098 0.902
34 H 0.054 0.946
35 H 0.082 0.918
36 H 0.132 0.868
37 H 0.104 0.896
38 H 0.121 0.879
39 H 0.131 0.869
40 H 0.118 0.882
41 H 0.247 0.753
42 H 0.138 0.862
43 H 0.117 0.883
44 H 0.105 0.895
45 H 0.110 0.890
46 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges -8.703 20.233 -5.783 22.771
hybrid contribution 0.333 -0.874 -0.378 1.009
sum -8.370 19.359 -6.161 21.972
Atomic orbital electron populations
1.21860 0.77495 1.03916 1.02467 1.46987 1.07824 1.03690 1.77525
1.21514 0.98582 0.83774 0.94792 1.22945 0.86296 0.99313 0.94219
1.87824 1.29735 1.87824 1.25415 1.22068 0.95999 0.98195 0.82390
1.22124 0.97714 1.06054 0.91943 1.23126 1.02511 0.94340 1.02478
1.23064 1.04017 0.96290 0.96441 1.16171 0.85081 0.81290 0.78093
1.90857 1.13544 1.86601 1.59577 1.42028 1.09652 1.02588 1.76616
1.16922 0.97285 0.86403 1.07488 1.20398 1.00003 0.93230 0.98691
1.20626 0.98313 0.96894 1.04886 1.17897 0.92100 0.92980 0.89072
1.19675 0.96434 0.92509 1.44735 0.90765 1.26719 0.95271 1.01562
0.93218 1.69949 1.12842 1.27750 1.31788 0.85377 0.79433 0.77022
0.79030 1.18373 1.18475 1.18634 1.20728 1.02698 0.95621 1.07260
1.20421 0.95256 0.95926 0.98072 0.92405 0.91253 0.88385 0.89512
0.86607 0.95865 0.90178 0.94632 0.91761 0.86766 0.89573 0.87904
0.86936 0.88203 0.75317 0.86220 0.88295 0.89528 0.88975 0.88101
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.57 9.88 127.77 1.26 2.83 16
2 N -0.62 -16.52 2.84 -864.92 -2.45 -18.97 16
3 C 0.14 2.99 5.86 86.38 0.51 3.49 16
4 C 0.05 1.10 6.28 71.98 0.45 1.55 16
5 O -0.39 -8.29 9.90 -148.98 -1.47 -9.76 16
6 C 0.09 1.65 6.22 71.98 0.45 2.09 16
7 C -0.16 -2.51 6.06 -10.79 -0.07 -2.58 16
8 C -0.19 -2.85 10.18 30.59 0.31 -2.54 16
9 C -0.16 -1.96 10.25 30.59 0.31 -1.64 16
10 C 0.69 25.65 8.09 179.05 1.45 27.10 16
11 O -0.62 -28.60 13.53 -3.96 -0.05 -28.65 16
12 N -0.66 -24.40 5.17 -316.78 -1.64 -26.04 16
13 C 0.01 0.59 6.25 38.57 0.24 0.84 16
14 C -0.10 -4.83 9.90 22.13 0.22 -4.61 16
15 C -0.19 -9.98 8.74 22.48 0.20 -9.79 16
16 C 0.08 4.66 5.57 -21.28 -0.12 4.54 16
17 C -0.51 -28.19 8.94 23.39 0.21 -27.99 16
18 H 0.07 4.06 8.01 -2.91 -0.02 4.04 16
19 C 0.05 2.61 4.77 85.23 0.41 3.02 16
20 N -0.80 -41.31 11.78 21.82 0.26 -41.05 16
21 Si 0.97 38.07 29.66 68.60 2.03 40.11 16
22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16
23 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16
24 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16
25 C -0.24 -13.28 9.74 22.48 0.22 -13.06 16
26 C -0.08 -3.92 8.59 22.14 0.19 -3.73 16
27 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16
28 H 0.07 1.17 6.32 -2.38 -0.02 1.16 16
29 H 0.10 1.29 7.89 -2.39 -0.02 1.27 16
30 H 0.09 2.15 7.42 -2.39 -0.02 2.13 16
31 H 0.12 1.75 7.89 -2.39 -0.02 1.73 16
32 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16
33 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16
34 H 0.04 0.74 7.87 -2.38 -0.02 0.72 16
35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16
36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
37 H 0.09 1.46 8.03 -2.39 -0.02 1.44 16
38 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16
40 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
41 H 0.41 11.96 6.52 -92.71 -0.60 11.35 16
42 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16
43 H 0.10 5.33 6.53 -2.91 -0.02 5.31 16
44 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16
45 H 0.09 4.86 8.06 -2.91 -0.02 4.84 16
46 H 0.10 5.16 6.44 -2.91 -0.02 5.14 16
Total: -1.00 -69.85 382.00 3.28 -66.57
By element:
Atomic # 1 Polarization: 37.89 SS G_CDS: 0.37 Total: 38.27 kcal
Atomic # 6 Polarization: -26.71 SS G_CDS: 6.24 Total: -20.47 kcal
Atomic # 7 Polarization: -82.23 SS G_CDS: -3.84 Total: -86.06 kcal
Atomic # 8 Polarization: -36.88 SS G_CDS: -1.53 Total: -38.41 kcal
Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.11 kcal
Total: -69.85 3.28 -66.57 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000130339274.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.156 kcal
(2) G-P(sol) polarization free energy of solvation -69.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.695 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.566 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.410 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds