Wall clock time and date at job start Tue Mar 31 2020 12:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99997 * 2 1 4 4 C 1.50696 * 109.46822 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.00067 * 89.99887 * 4 3 2 6 6 C 1.38213 * 120.00270 * 180.02562 * 5 4 3 7 7 C 1.38262 * 119.99790 * 0.02562 * 6 5 4 8 8 C 1.38204 * 120.00018 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00325 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47106 * 89.99892 * 9 8 7 11 11 O 1.21275 * 120.00197 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99596 * 180.02562 * 10 9 8 13 13 C 1.46969 * 120.59184 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63823 * 235.24762 * 13 12 10 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59893 * 0.02562 * 12 10 9 26 26 C 1.38211 * 120.00040 * 270.27439 * 4 3 2 27 27 H 1.09010 * 109.46838 * 299.99929 * 1 2 3 28 28 H 1.08992 * 109.47705 * 59.99496 * 1 2 3 29 29 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47205 * 60.00208 * 3 2 1 31 31 H 1.08997 * 109.46931 * 300.00339 * 3 2 1 32 32 H 1.08004 * 120.00361 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.00350 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99644 * 179.97438 * 7 6 5 35 35 H 1.09008 * 109.47104 * 330.00208 * 9 8 7 36 36 H 1.08996 * 109.47686 * 210.00407 * 9 8 7 37 37 H 1.09001 * 109.60759 * 115.50025 * 13 12 10 38 38 H 1.08997 * 109.60686 * 354.99512 * 13 12 10 39 39 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 40 40 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 41 41 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 43 43 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 44 44 H 1.09002 * 109.60509 * 244.49992 * 25 12 10 45 45 H 1.09000 * 109.60856 * 4.83277 * 25 12 10 46 46 H 1.08004 * 120.00253 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.2011 1.1320 -1.1982 6 6 5.5789 1.0222 -1.1989 7 6 6.2685 0.9663 -0.0018 8 6 5.5801 1.0208 1.1954 9 6 6.3315 0.9593 2.5002 10 6 6.6960 2.3551 2.9363 11 8 6.3765 3.3061 2.2549 12 7 7.3769 2.5464 4.0835 13 6 7.7396 3.9018 4.5210 14 6 9.2562 3.9560 4.7425 15 7 9.6498 2.8129 5.5782 16 6 10.3425 3.0073 6.7434 17 1 10.2449 2.3003 7.5539 18 6 11.1743 4.1100 6.8806 19 7 11.5667 4.7751 5.8148 20 14 11.7367 4.6503 8.5781 21 1 11.1608 3.7425 9.6025 22 1 13.2192 4.5979 8.6482 23 1 11.2778 6.0394 8.8328 24 6 9.2921 1.4572 5.1379 25 6 7.7711 1.4033 4.9190 26 6 4.2014 1.1259 1.1960 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.6625 1.1752 -2.1334 33 1 6.1168 0.9793 -2.1344 34 1 7.3450 0.8802 -0.0023 35 1 7.2397 0.3708 2.3691 36 1 5.7035 0.4937 3.2597 37 1 7.2251 4.1352 5.4531 38 1 7.4560 4.6219 3.7535 39 1 9.5192 4.8857 5.2469 40 1 9.7708 3.9021 3.7831 41 1 12.1483 5.5455 5.9106 42 1 9.8068 1.2278 4.2050 43 1 9.5789 0.7364 5.9037 44 1 7.2589 1.4585 5.8796 45 1 7.5056 0.4736 4.4158 46 1 3.6632 1.1643 2.1316 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189727395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:49 Heat of formation + Delta-G solvation = -45.099456 kcal Electronic energy + Delta-G solvation = -26314.570761 eV Core-core repulsion = 22590.269470 eV Total energy + Delta-G solvation = -3724.301290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29054 -40.20698 -38.63426 -38.23252 -35.62524 -34.16016 -33.04985 -32.65651 -31.95601 -29.29586 -28.30629 -27.93478 -26.21907 -25.43530 -24.44925 -23.17476 -22.50185 -21.52169 -20.01562 -18.75384 -17.80579 -17.63963 -17.29302 -17.10352 -16.79227 -16.69010 -16.42709 -16.26746 -15.62591 -15.47030 -15.28558 -15.03069 -14.96429 -14.62824 -14.09657 -14.02515 -13.57934 -13.37565 -13.33303 -13.24151 -13.13018 -12.83853 -12.69014 -12.45265 -12.33696 -12.25044 -12.03038 -11.97226 -11.83992 -11.80814 -11.65320 -10.83796 -10.65895 -10.62097 -9.80426 -9.75859 -9.60833 -8.66003 -7.88732 -5.37590 0.33395 0.46369 1.46799 1.49503 1.59503 1.67501 2.08505 2.50658 2.66413 3.18414 3.26254 3.60327 3.64746 3.78206 3.85881 3.99332 4.18357 4.25612 4.26388 4.31591 4.34320 4.42209 4.44124 4.51223 4.54471 4.56495 4.61029 4.61641 4.67417 4.76639 4.81500 4.87338 4.89754 5.07065 5.09555 5.15512 5.26288 5.46252 5.52429 5.60809 5.61650 5.65582 5.69147 6.07568 6.20040 6.35237 6.55608 7.09085 7.22535 7.79169 8.32344 9.16549 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030054 B = 0.002396 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.446732 B =11681.808685 C =11949.497441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.105 3.895 4 C -0.107 4.107 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.115 4.115 8 C -0.078 4.078 9 C -0.093 4.093 10 C 0.509 3.491 11 O -0.587 6.587 12 N -0.604 5.604 13 C 0.104 3.896 14 C 0.171 3.829 15 N -0.610 5.610 16 C -0.259 4.259 17 H 0.077 0.923 18 C -0.054 4.054 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.293 1.293 24 C 0.123 3.877 25 C 0.097 3.903 26 C -0.099 4.099 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.067 0.933 40 H -0.009 1.009 41 H 0.250 0.750 42 H 0.017 0.983 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.406 -11.840 -10.756 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.029 3.971 4 C -0.107 4.107 5 C -0.126 4.126 6 C -0.145 4.145 7 C -0.133 4.133 8 C -0.079 4.079 9 C -0.132 4.132 10 C 0.299 3.701 11 O -0.468 6.468 12 N -0.336 5.336 13 C -0.021 4.021 14 C 0.044 3.956 15 N -0.333 5.333 16 C -0.389 4.389 17 H 0.094 0.906 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.797 3.203 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.220 1.220 24 C -0.002 4.002 25 C -0.026 4.026 26 C -0.117 4.117 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.009 0.991 41 H 0.059 0.941 42 H 0.035 0.965 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.139 0.861 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.361 -11.406 -11.076 25.052 hybrid contribution 0.773 1.157 0.766 1.589 sum -18.587 -10.249 -10.310 23.597 Atomic orbital electron populations 1.22952 0.79371 1.03895 1.00992 1.87930 1.21461 1.27960 1.95608 1.21354 0.88894 0.84981 1.01838 1.19789 0.94993 1.02324 0.93643 1.21284 0.94536 0.98851 0.97946 1.21380 0.94525 1.00073 0.98558 1.21293 1.00370 0.99133 0.92483 1.19468 0.93693 1.00331 0.94371 1.20741 1.03073 0.93113 0.96245 1.21187 0.76967 0.92276 0.79703 1.90651 1.56265 1.45153 1.54715 1.48170 1.54546 1.08208 1.22659 1.22043 0.97030 0.84098 0.98924 1.20858 0.89644 0.92712 0.92415 1.44286 1.64099 1.01066 1.23880 1.19602 1.18475 1.09219 0.91613 0.90564 1.25875 0.97684 1.01052 1.00274 1.70187 1.37211 1.21943 1.29053 0.85191 0.77055 0.77784 0.80289 1.18579 1.22207 1.21965 1.21598 0.93413 0.87192 0.98046 1.22503 0.96093 0.88536 0.95471 1.21030 0.93654 0.98831 0.98163 0.93255 0.92847 0.88493 0.91976 0.90993 0.84178 0.83801 0.85509 0.85840 0.85293 0.91781 0.91083 0.91464 0.99106 0.94110 0.96481 0.90060 0.90604 0.86093 0.85670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.11 10.69 -148.98 -1.59 -9.70 16 3 C 0.11 1.94 6.06 71.23 0.43 2.37 16 4 C -0.11 -2.46 5.51 -19.87 -0.11 -2.56 16 5 C -0.11 -2.29 9.70 22.27 0.22 -2.08 16 6 C -0.13 -2.76 10.05 22.27 0.22 -2.54 16 7 C -0.11 -2.81 9.70 22.27 0.22 -2.59 16 8 C -0.08 -1.98 4.37 -19.87 -0.09 -2.06 16 9 C -0.09 -2.11 4.17 29.10 0.12 -1.99 16 10 C 0.51 16.78 7.69 87.66 0.67 17.45 16 11 O -0.59 -24.18 15.44 -3.02 -0.05 -24.23 16 12 N -0.60 -20.70 2.95 -817.25 -2.41 -23.11 16 13 C 0.10 4.22 6.59 86.41 0.57 4.79 16 14 C 0.17 8.39 5.51 86.41 0.48 8.86 16 15 N -0.61 -29.47 2.96 -697.46 -2.06 -31.53 16 16 C -0.26 -13.62 9.57 84.03 0.80 -12.82 16 17 H 0.08 3.81 7.89 -2.91 -0.02 3.79 16 18 C -0.05 -2.93 4.91 84.86 0.42 -2.52 16 19 N -0.94 -55.32 11.20 21.65 0.24 -55.08 16 20 Si 0.97 43.91 29.59 68.60 2.03 45.94 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 24 C 0.12 4.56 6.70 86.55 0.58 5.14 16 25 C 0.10 2.75 6.52 86.55 0.56 3.32 16 26 C -0.10 -2.43 9.36 22.27 0.21 -2.22 16 27 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 1.06 8.09 -2.39 -0.02 1.04 16 31 H 0.07 1.07 8.08 -2.39 -0.02 1.06 16 32 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.12 2.31 7.67 -2.38 -0.02 2.29 16 36 H 0.13 2.19 7.85 -2.39 -0.02 2.17 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 3.00 6.99 -2.39 -0.02 2.99 16 39 H 0.07 3.72 6.00 -2.39 -0.01 3.70 16 40 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 41 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.12 2.30 5.91 -2.39 -0.01 2.28 16 46 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -72.82 375.52 3.67 -69.15 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.96 Total: 16.46 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.55 Total: 12.10 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -4.23 Total: -109.72 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -1.64 Total: -33.94 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -72.82 3.67 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189727395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds