Wall clock time and date at job start Tue Mar 31 2020 12:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99849 * 2 1 4 4 C 1.53010 * 109.46909 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46891 * 64.73567 * 4 3 2 6 6 C 1.46906 * 110.99666 * 176.26463 * 5 4 3 7 7 C 1.53241 * 109.33569 * 172.74673 * 6 5 4 8 8 N 1.47078 * 108.52698 * 53.83016 * 7 6 5 9 9 C 1.34775 * 120.88415 * 128.78948 * 8 7 6 10 10 O 1.21543 * 119.99778 * 353.87559 * 9 8 7 11 11 C 1.47880 * 120.00070 * 173.87935 * 9 8 7 12 12 C 1.39921 * 120.02326 * 332.87431 * 11 9 8 13 13 C 1.38334 * 120.35644 * 179.71751 * 12 11 9 14 14 C 1.37750 * 120.41151 * 0.56423 * 13 12 11 15 15 C 1.40751 * 120.04044 * 359.70796 * 14 13 12 16 16 C 1.41436 * 120.17895 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00373 * 326.12722 * 16 15 14 18 18 C 1.39931 * 120.00045 * 146.12602 * 16 15 14 19 19 N 1.30828 * 120.00046 * 354.28502 * 18 16 15 20 20 Si 1.86801 * 120.00141 * 174.28090 * 18 16 15 21 21 H 1.48503 * 109.47090 * 60.00409 * 20 18 16 22 22 H 1.48501 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47120 * 300.00073 * 20 18 16 24 24 C 1.38997 * 120.02688 * 153.14857 * 11 9 8 25 25 C 1.47086 * 118.23440 * 308.81545 * 8 7 6 26 26 C 1.46904 * 111.00354 * 51.96284 * 5 4 3 27 27 H 1.08997 * 109.47191 * 300.00611 * 1 2 3 28 28 H 1.09003 * 109.46602 * 60.00036 * 1 2 3 29 29 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47265 * 60.00101 * 3 2 1 31 31 H 1.09004 * 109.47027 * 299.99761 * 3 2 1 32 32 H 1.08995 * 109.46582 * 304.73434 * 4 3 2 33 33 H 1.09002 * 109.46627 * 184.73629 * 4 3 2 34 34 H 1.08997 * 109.49015 * 52.78712 * 6 5 4 35 35 H 1.09003 * 109.49163 * 292.70119 * 6 5 4 36 36 H 1.09001 * 109.62409 * 173.53910 * 7 6 5 37 37 H 1.09001 * 109.63120 * 293.92079 * 7 6 5 38 38 H 1.08001 * 119.82345 * 359.97009 * 12 11 9 39 39 H 1.07998 * 119.79599 * 180.25229 * 13 12 11 40 40 H 1.08003 * 119.97936 * 179.70326 * 14 13 12 41 41 H 0.97004 * 119.99995 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.20151 * 0.02562 * 24 11 9 43 43 H 1.09002 * 109.62602 * 170.89283 * 25 8 7 44 44 H 1.08999 * 109.62732 * 291.47346 * 25 8 7 45 45 H 1.08998 * 109.48709 * 67.28986 * 26 5 4 46 46 H 1.09004 * 109.49100 * 307.21172 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9774 0.5565 -1.2516 6 6 5.4437 0.5042 -1.3254 7 6 5.8611 -0.3146 -2.5516 8 7 5.1984 0.2489 -3.7375 9 6 5.9055 0.5642 -4.8407 10 8 7.1185 0.4891 -4.8271 11 6 5.2054 1.0014 -6.0677 12 6 3.8956 0.5765 -6.3156 13 6 3.2321 0.9861 -7.4583 14 6 3.8570 1.8073 -8.3709 15 6 5.1764 2.2404 -8.1414 16 6 5.8205 3.0840 -9.0761 17 1 5.6113 2.9807 -10.1307 18 6 6.7288 4.0526 -8.6347 19 7 6.8990 4.2540 -7.3533 20 14 7.6986 5.0579 -9.8750 21 1 6.7594 5.8151 -10.7410 22 1 8.5849 6.0087 -9.1570 23 1 8.5218 4.1496 -10.7131 24 6 5.8501 1.8303 -6.9785 25 6 3.7436 0.4597 -3.6874 26 6 3.4095 1.2481 -2.4166 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8510 0.5724 0.8454 33 1 3.9785 2.1770 0.0855 34 1 5.8367 0.0349 -0.4235 35 1 5.8398 1.5161 -1.4117 36 1 6.9426 -0.2613 -2.6765 37 1 5.5587 -1.3534 -2.4185 38 1 3.3983 -0.0715 -5.6090 39 1 2.2198 0.6559 -7.6386 40 1 3.3341 2.1189 -9.2631 41 1 7.5284 4.9257 -7.0473 42 1 6.8628 2.1568 -6.7936 43 1 3.4252 1.0250 -4.5633 44 1 3.2346 -0.5038 -3.6649 45 1 3.8340 2.2495 -2.4875 46 1 2.3274 1.3183 -2.3060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192525560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:52 Heat of formation + Delta-G solvation = -27.656413 kcal Electronic energy + Delta-G solvation = -27048.409722 eV Core-core repulsion = 23324.864819 eV Total energy + Delta-G solvation = -3723.544903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.02049 -38.58329 -37.43313 -36.84102 -34.53056 -33.62859 -31.60344 -30.10706 -29.78119 -29.47966 -26.97612 -25.87965 -25.48624 -23.72920 -22.97530 -21.53438 -20.98427 -20.37203 -18.74711 -17.59101 -16.67542 -16.62495 -15.82178 -15.71129 -15.42534 -15.23771 -14.93876 -14.82437 -14.65730 -14.41975 -14.10831 -13.63698 -13.28161 -13.05528 -12.82471 -12.57572 -12.39621 -12.14047 -11.97095 -11.77198 -11.65900 -11.49014 -11.24162 -11.20760 -11.13576 -11.06520 -10.70728 -10.49627 -10.31564 -10.03363 -9.80116 -9.64521 -9.27217 -8.94777 -8.52916 -8.10902 -7.61687 -7.40593 -6.71999 -4.44706 2.22512 2.79946 3.08252 3.10585 3.13056 3.40586 3.58947 3.73329 3.89479 3.95230 4.64337 4.73392 4.84821 4.93411 5.05796 5.11625 5.15109 5.19268 5.27114 5.36041 5.38038 5.46468 5.50227 5.53187 5.64976 5.66632 5.67416 5.88794 6.00902 6.03638 6.10392 6.18657 6.28393 6.65572 6.84624 6.89052 6.98459 7.00550 7.02520 7.08532 7.22108 7.37135 7.64304 7.75894 7.87233 8.03135 8.16524 8.49542 8.81564 8.82741 8.90258 10.23608 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003140 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.432612 B = 8914.388697 C = 9327.560028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.058 3.942 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.043 3.957 7 C 0.119 3.881 8 N -0.616 5.616 9 C 0.569 3.431 10 O -0.549 6.549 11 C -0.129 4.129 12 C -0.221 4.221 13 C -0.104 4.104 14 C -0.201 4.201 15 C 0.101 3.899 16 C -0.466 4.466 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.805 5.805 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.081 4.081 25 C 0.094 3.906 26 C 0.034 3.966 27 H 0.036 0.964 28 H 0.040 0.960 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.282 0.718 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 -3.841 13.894 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.292 6.292 3 C -0.019 4.019 4 C -0.072 4.072 5 N -0.254 5.254 6 C -0.086 4.086 7 C -0.004 4.004 8 N -0.351 5.351 9 C 0.361 3.639 10 O -0.428 6.428 11 C -0.132 4.132 12 C -0.240 4.240 13 C -0.123 4.123 14 C -0.221 4.221 15 C 0.098 3.902 16 C -0.496 4.496 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.431 5.431 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.101 4.101 25 C -0.029 4.029 26 C -0.095 4.095 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.111 0.889 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.088 0.912 45 H 0.056 0.944 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.682 -4.367 14.062 17.093 hybrid contribution 0.371 1.666 -0.285 1.730 sum -8.311 -2.702 13.777 16.315 Atomic orbital electron populations 1.22736 0.81633 1.02684 0.99654 1.88017 1.18929 1.27008 1.95248 1.22693 0.93534 0.85452 1.00199 1.22131 0.93386 0.98078 0.93560 1.61985 1.08598 1.53332 1.01455 1.22482 0.87517 0.99602 0.98955 1.21542 0.98871 0.96651 0.83384 1.47978 1.08242 1.64674 1.14167 1.18914 0.86604 0.75237 0.83109 1.90673 1.14070 1.53885 1.84146 1.19476 0.95254 1.03473 0.95026 1.20890 0.95124 1.07886 1.00112 1.20502 0.98078 0.98897 0.94795 1.21243 0.95291 1.04999 1.00526 1.17606 0.90320 0.90081 0.92152 1.19499 1.20927 1.14376 0.94796 0.90282 1.25890 0.95504 0.97269 0.95839 1.69730 1.29796 1.28793 1.14758 0.86259 0.79659 0.79412 0.80722 1.19075 1.20357 1.18865 1.21606 0.99805 0.94914 0.93820 1.22677 0.80690 1.00824 0.98669 1.22699 1.00264 0.95892 0.90615 0.94524 0.94137 0.89696 0.93130 0.92674 0.89790 0.93482 0.89898 0.94394 0.88921 0.91275 0.87169 0.88691 0.88492 0.90736 0.85227 0.85619 0.91199 0.94402 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.11 10.65 -35.23 -0.38 -4.49 16 3 C 0.06 0.54 5.64 37.16 0.21 0.75 16 4 C 0.06 0.57 5.50 -3.82 -0.02 0.55 16 5 N -0.53 -6.62 4.68 -234.31 -1.10 -7.72 16 6 C 0.04 0.55 5.62 -3.70 -0.02 0.53 16 7 C 0.12 1.80 6.61 -3.60 -0.02 1.78 16 8 N -0.62 -11.04 3.01 -173.56 -0.52 -11.57 16 9 C 0.57 12.80 7.49 -12.31 -0.09 12.70 16 10 O -0.55 -13.97 16.09 5.33 0.09 -13.88 16 11 C -0.13 -3.04 5.51 -105.04 -0.58 -3.62 16 12 C -0.22 -4.55 7.45 -38.92 -0.29 -4.84 16 13 C -0.10 -2.16 10.01 -39.72 -0.40 -2.56 16 14 C -0.20 -4.67 9.78 -38.81 -0.38 -5.05 16 15 C 0.10 2.64 5.51 -106.87 -0.59 2.05 16 16 C -0.47 -12.24 9.04 -37.73 -0.34 -12.58 16 17 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 18 C 0.07 1.81 5.31 -17.35 -0.09 1.72 16 19 N -0.80 -21.32 10.94 55.55 0.61 -20.71 16 20 Si 0.91 19.01 29.56 -169.99 -5.03 13.99 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 24 C -0.08 -2.16 8.16 -38.44 -0.31 -2.47 16 25 C 0.09 1.44 4.80 -3.60 -0.02 1.42 16 26 C 0.03 0.45 5.23 -3.70 -0.02 0.43 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.51 5.88 -51.93 -0.31 0.21 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.88 8.11 -51.93 -0.42 0.46 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.51 7.04 -51.93 -0.37 1.15 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.11 1.94 5.11 -52.49 -0.27 1.67 16 39 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.10 2.10 8.06 -52.48 -0.42 1.68 16 41 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 42 H 0.13 3.76 6.25 -52.49 -0.33 3.43 16 43 H 0.13 2.09 4.20 -51.93 -0.22 1.87 16 44 H 0.07 1.00 7.92 -51.93 -0.41 0.59 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.01 5.67 -51.93 -0.29 0.72 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -30.41 364.66 -9.49 -39.91 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.81 Total: 6.81 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -1.85 Total: -7.83 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: -1.01 Total: -40.00 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.29 Total: -18.37 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.41 -9.49 -39.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192525560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.251 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds