Wall clock time and date at job start Tue Mar 31 2020 12:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99849 * 2 1 4 4 C 1.53010 * 109.46909 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.46891 * 64.73567 * 4 3 2 6 6 C 1.46906 * 110.99666 * 176.26463 * 5 4 3 7 7 C 1.53241 * 109.33569 * 172.74673 * 6 5 4 8 8 N 1.47078 * 108.52698 * 53.83016 * 7 6 5 9 9 C 1.34775 * 120.88415 * 128.78948 * 8 7 6 10 10 O 1.21543 * 119.99778 * 353.87559 * 9 8 7 11 11 C 1.47880 * 120.00070 * 173.87935 * 9 8 7 12 12 C 1.39921 * 120.02326 * 332.87431 * 11 9 8 13 13 C 1.38334 * 120.35644 * 179.71751 * 12 11 9 14 14 C 1.37750 * 120.41151 * 0.56423 * 13 12 11 15 15 C 1.40751 * 120.04044 * 359.70796 * 14 13 12 16 16 C 1.41436 * 120.17895 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00373 * 326.12722 * 16 15 14 18 18 C 1.39931 * 120.00045 * 146.12602 * 16 15 14 19 19 N 1.30828 * 120.00046 * 354.28502 * 18 16 15 20 20 Si 1.86801 * 120.00141 * 174.28090 * 18 16 15 21 21 H 1.48503 * 109.47090 * 60.00409 * 20 18 16 22 22 H 1.48501 * 109.47162 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47120 * 300.00073 * 20 18 16 24 24 C 1.38997 * 120.02688 * 153.14857 * 11 9 8 25 25 C 1.47086 * 118.23440 * 308.81545 * 8 7 6 26 26 C 1.46904 * 111.00354 * 51.96284 * 5 4 3 27 27 H 1.08997 * 109.47191 * 300.00611 * 1 2 3 28 28 H 1.09003 * 109.46602 * 60.00036 * 1 2 3 29 29 H 1.08995 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47265 * 60.00101 * 3 2 1 31 31 H 1.09004 * 109.47027 * 299.99761 * 3 2 1 32 32 H 1.08995 * 109.46582 * 304.73434 * 4 3 2 33 33 H 1.09002 * 109.46627 * 184.73629 * 4 3 2 34 34 H 1.08997 * 109.49015 * 52.78712 * 6 5 4 35 35 H 1.09003 * 109.49163 * 292.70119 * 6 5 4 36 36 H 1.09001 * 109.62409 * 173.53910 * 7 6 5 37 37 H 1.09001 * 109.63120 * 293.92079 * 7 6 5 38 38 H 1.08001 * 119.82345 * 359.97009 * 12 11 9 39 39 H 1.07998 * 119.79599 * 180.25229 * 13 12 11 40 40 H 1.08003 * 119.97936 * 179.70326 * 14 13 12 41 41 H 0.97004 * 119.99995 * 180.02562 * 19 18 16 42 42 H 1.07996 * 120.20151 * 0.02562 * 24 11 9 43 43 H 1.09002 * 109.62602 * 170.89283 * 25 8 7 44 44 H 1.08999 * 109.62732 * 291.47346 * 25 8 7 45 45 H 1.08998 * 109.48709 * 67.28986 * 26 5 4 46 46 H 1.09004 * 109.49100 * 307.21172 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9774 0.5565 -1.2516 6 6 5.4437 0.5042 -1.3254 7 6 5.8611 -0.3146 -2.5516 8 7 5.1984 0.2489 -3.7375 9 6 5.9055 0.5642 -4.8407 10 8 7.1185 0.4891 -4.8271 11 6 5.2054 1.0014 -6.0677 12 6 3.8956 0.5765 -6.3156 13 6 3.2321 0.9861 -7.4583 14 6 3.8570 1.8073 -8.3709 15 6 5.1764 2.2404 -8.1414 16 6 5.8205 3.0840 -9.0761 17 1 5.6113 2.9807 -10.1307 18 6 6.7288 4.0526 -8.6347 19 7 6.8990 4.2540 -7.3533 20 14 7.6986 5.0579 -9.8750 21 1 6.7594 5.8151 -10.7410 22 1 8.5849 6.0087 -9.1570 23 1 8.5218 4.1496 -10.7131 24 6 5.8501 1.8303 -6.9785 25 6 3.7436 0.4597 -3.6874 26 6 3.4095 1.2481 -2.4166 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8510 0.5724 0.8454 33 1 3.9785 2.1770 0.0855 34 1 5.8367 0.0349 -0.4235 35 1 5.8398 1.5161 -1.4117 36 1 6.9426 -0.2613 -2.6765 37 1 5.5587 -1.3534 -2.4185 38 1 3.3983 -0.0715 -5.6090 39 1 2.2198 0.6559 -7.6386 40 1 3.3341 2.1189 -9.2631 41 1 7.5284 4.9257 -7.0473 42 1 6.8628 2.1568 -6.7936 43 1 3.4252 1.0250 -4.5633 44 1 3.2346 -0.5038 -3.6649 45 1 3.8340 2.2495 -2.4875 46 1 2.3274 1.3183 -2.3060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192525560.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:51 Heat of formation + Delta-G solvation = -47.815265 kcal Electronic energy + Delta-G solvation = -27049.283875 eV Core-core repulsion = 23324.864819 eV Total energy + Delta-G solvation = -3724.419057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50012 -39.72636 -38.84778 -38.19547 -35.96977 -35.35787 -32.95485 -31.49324 -31.36272 -30.93852 -27.97304 -27.33416 -26.70186 -24.97051 -24.41416 -22.78175 -22.65330 -21.69276 -20.28115 -19.29567 -17.85883 -17.57072 -17.30070 -17.00814 -16.77682 -16.60822 -16.36860 -16.20534 -15.73340 -15.51334 -15.29951 -15.00986 -14.93307 -14.51939 -14.31718 -14.17687 -13.61356 -13.58000 -13.21549 -12.92715 -12.83569 -12.83388 -12.71197 -12.53141 -12.34675 -12.26535 -12.21048 -11.94629 -11.87031 -11.60589 -11.40333 -11.11870 -10.69464 -10.47929 -9.86180 -9.45406 -9.26104 -9.24163 -8.58915 -6.41866 0.39921 0.99587 1.36128 1.46775 1.48409 1.91946 2.06246 2.20839 2.74344 2.84594 2.99049 3.60360 3.66032 3.86292 3.93621 4.02968 4.19344 4.23560 4.31146 4.37965 4.41931 4.46451 4.53246 4.58392 4.62342 4.63305 4.66437 4.73153 4.82127 4.83559 4.91053 4.94218 4.95784 5.03010 5.08931 5.17017 5.30519 5.49977 5.55847 5.82340 5.90954 5.97093 5.99053 6.04859 6.27693 6.35892 6.39096 6.60584 6.90389 6.93723 7.19015 8.38085 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018114 B = 0.003140 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.432612 B = 8914.388697 C = 9327.560028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.058 3.942 4 C 0.055 3.945 5 N -0.531 5.531 6 C 0.051 3.949 7 C 0.114 3.886 8 N -0.606 5.606 9 C 0.560 3.440 10 O -0.594 6.594 11 C -0.140 4.140 12 C -0.196 4.196 13 C -0.099 4.099 14 C -0.203 4.203 15 C 0.068 3.932 16 C -0.503 4.503 17 H 0.082 0.918 18 C 0.026 3.974 19 N -0.845 5.845 20 Si 0.985 3.015 21 H -0.253 1.253 22 H -0.274 1.274 23 H -0.262 1.262 24 C -0.117 4.117 25 C 0.090 3.910 26 C 0.041 3.959 27 H 0.049 0.951 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.112 0.888 41 H 0.282 0.718 42 H 0.090 0.910 43 H 0.113 0.887 44 H 0.093 0.907 45 H 0.020 0.980 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 -4.737 15.151 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C -0.018 4.018 4 C -0.073 4.073 5 N -0.256 5.256 6 C -0.078 4.078 7 C -0.008 4.008 8 N -0.339 5.339 9 C 0.352 3.648 10 O -0.476 6.476 11 C -0.143 4.143 12 C -0.215 4.215 13 C -0.117 4.117 14 C -0.222 4.222 15 C 0.066 3.934 16 C -0.533 4.533 17 H 0.100 0.900 18 C -0.187 4.187 19 N -0.472 5.472 20 Si 0.806 3.194 21 H -0.177 1.177 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.137 4.137 25 C -0.031 4.031 26 C -0.088 4.088 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.040 0.960 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.108 0.892 43 H 0.131 0.869 44 H 0.111 0.889 45 H 0.038 0.962 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.586 -5.282 15.356 19.949 hybrid contribution 1.072 1.787 -0.514 2.146 sum -10.514 -3.495 14.842 18.522 Atomic orbital electron populations 1.22875 0.80242 1.03456 1.00524 1.87971 1.20550 1.27818 1.95455 1.22723 0.92696 0.85218 1.01176 1.22227 0.94256 0.98398 0.92382 1.62009 1.07917 1.53537 1.02137 1.22416 0.88153 0.98470 0.98749 1.21749 0.97889 0.98011 0.83149 1.48046 1.09432 1.62912 1.13483 1.18903 0.86219 0.75506 0.84152 1.90639 1.15852 1.56088 1.85006 1.19730 0.96600 1.02902 0.95085 1.21355 0.93445 1.06328 1.00331 1.20992 0.99940 0.97246 0.93496 1.21545 0.94304 1.04794 1.01605 1.17932 0.91941 0.91038 0.92486 1.19789 1.22815 1.15639 0.95077 0.89980 1.26788 0.96127 0.98141 0.97598 1.69857 1.30873 1.29790 1.16697 0.85198 0.78214 0.77782 0.78181 1.17721 1.19869 1.18640 1.21353 0.98841 0.97652 0.95887 1.22809 0.78834 1.02070 0.99435 1.22616 1.01554 0.94523 0.90092 0.93240 0.93667 0.89074 0.91172 0.92657 0.88939 0.92868 0.87097 0.96049 0.90723 0.89315 0.83291 0.83854 0.87022 0.90746 0.89173 0.86904 0.88890 0.96154 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -7.50 10.65 -148.98 -1.59 -9.08 16 3 C 0.06 0.91 5.64 71.99 0.41 1.31 16 4 C 0.05 0.95 5.50 86.31 0.47 1.43 16 5 N -0.53 -11.86 4.68 -895.22 -4.19 -16.05 16 6 C 0.05 1.22 5.62 86.38 0.49 1.70 16 7 C 0.11 3.36 6.61 86.35 0.57 3.93 16 8 N -0.61 -21.31 3.01 -821.30 -2.47 -23.79 16 9 C 0.56 25.90 7.49 86.80 0.65 26.55 16 10 O -0.59 -31.93 16.09 -3.85 -0.06 -31.99 16 11 C -0.14 -6.73 5.51 -20.13 -0.11 -6.84 16 12 C -0.20 -7.65 7.45 22.70 0.17 -7.48 16 13 C -0.10 -3.80 10.01 22.18 0.22 -3.58 16 14 C -0.20 -9.31 9.78 22.77 0.22 -9.09 16 15 C 0.07 3.70 5.51 -21.32 -0.12 3.58 16 16 C -0.50 -27.62 9.04 23.47 0.21 -27.40 16 17 H 0.08 4.25 7.85 -2.91 -0.02 4.23 16 18 C 0.03 1.36 5.31 85.25 0.45 1.81 16 19 N -0.84 -47.64 10.94 21.82 0.24 -47.40 16 20 Si 0.99 40.39 29.56 68.60 2.03 42.42 16 21 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 24 C -0.12 -6.56 8.16 23.01 0.19 -6.37 16 25 C 0.09 2.52 4.80 86.35 0.41 2.94 16 26 C 0.04 0.98 5.23 86.38 0.45 1.43 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.84 5.88 -2.39 -0.01 0.83 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.11 2.06 8.11 -2.39 -0.02 2.04 16 35 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 2.49 7.04 -2.39 -0.02 2.47 16 37 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.15 4.65 5.11 -2.91 -0.01 4.64 16 39 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 40 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.28 14.77 8.30 -92.71 -0.77 14.00 16 42 H 0.09 5.71 6.25 -2.91 -0.02 5.69 16 43 H 0.11 3.46 4.20 -2.39 -0.01 3.45 16 44 H 0.09 2.26 7.92 -2.39 -0.02 2.24 16 45 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.11 2.18 5.67 -2.38 -0.01 2.17 16 Total: -1.00 -71.22 364.66 0.88 -70.35 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.98 Total: 30.06 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 5.94 Total: -14.51 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -6.42 Total: -87.24 kcal Atomic # 8 Polarization: -39.42 SS G_CDS: -1.65 Total: -41.07 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -71.22 0.88 -70.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192525560.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.530 kcal (2) G-P(sol) polarization free energy of solvation -71.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds