Wall clock time and date at job start Tue Mar 31 2020 12:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35977 * 116.99732 * 2 1 4 4 C 1.38724 * 119.98549 * 179.97438 * 3 2 1 5 5 C 1.38088 * 120.01654 * 180.02562 * 4 3 2 6 6 C 1.38847 * 119.97957 * 0.26239 * 5 4 3 7 7 N 1.40116 * 120.01047 * 179.72190 * 6 5 4 8 8 C 1.34774 * 120.00282 * 33.29266 * 7 6 5 9 9 O 1.21298 * 119.99547 * 5.28090 * 8 7 6 10 10 C 1.50700 * 119.99968 * 185.27556 * 8 7 6 11 11 N 1.46901 * 109.46844 * 180.02562 * 10 8 7 12 12 C 1.46853 * 111.00207 * 294.20976 * 11 10 8 13 13 C 1.53035 * 109.52470 * 174.16297 * 12 11 10 14 14 C 1.53114 * 109.27764 * 59.17817 * 13 12 11 15 15 C 1.50702 * 109.57283 * 182.41012 * 14 13 12 16 16 H 1.07998 * 119.99799 * 119.71977 * 15 14 13 17 17 C 1.37876 * 119.99982 * 299.71538 * 15 14 13 18 18 N 1.31511 * 119.99927 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99791 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46951 * 90.00425 * 19 17 15 21 21 H 1.48505 * 109.47218 * 209.99868 * 19 17 15 22 22 H 1.48499 * 109.47585 * 329.99924 * 19 17 15 23 23 C 1.53122 * 109.16141 * 302.34482 * 14 13 12 24 24 C 1.46842 * 110.99851 * 169.99996 * 11 10 8 25 25 C 1.38845 * 119.97573 * 359.44027 * 6 5 4 26 26 C 1.38095 * 119.97954 * 0.58123 * 25 6 5 27 27 H 1.08996 * 109.47497 * 300.00151 * 1 2 3 28 28 H 1.08994 * 109.46907 * 60.00564 * 1 2 3 29 29 H 1.09007 * 109.46795 * 180.02562 * 1 2 3 30 30 H 1.08006 * 119.98981 * 0.02634 * 4 3 2 31 31 H 1.07991 * 120.00659 * 179.97438 * 5 4 3 32 32 H 0.96998 * 119.99826 * 213.29661 * 7 6 5 33 33 H 1.08998 * 109.47139 * 300.00330 * 10 8 7 34 34 H 1.08994 * 109.46951 * 60.00513 * 10 8 7 35 35 H 1.09004 * 109.45860 * 294.18151 * 12 11 10 36 36 H 1.08998 * 109.45889 * 54.14197 * 12 11 10 37 37 H 1.09004 * 109.50098 * 299.24113 * 13 12 11 38 38 H 1.09001 * 109.50188 * 179.12341 * 13 12 11 39 39 H 1.09004 * 109.52332 * 62.25294 * 14 13 12 40 40 H 0.97002 * 120.00019 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.50494 * 297.71350 * 23 14 13 42 42 H 1.09001 * 109.50005 * 177.59650 * 23 14 13 43 43 H 1.09002 * 109.46534 * 305.85403 * 24 11 10 44 44 H 1.09003 * 109.46098 * 65.83528 * 24 11 10 45 45 H 1.07998 * 120.01461 * 180.28070 * 25 6 5 46 46 H 1.07998 * 119.98838 * 179.68010 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 3.4316 1.2839 0.0005 5 6 4.0591 2.5140 0.0011 6 6 3.3031 3.6785 0.0066 7 7 3.9391 4.9270 0.0130 8 6 5.1146 5.0878 -0.6264 9 8 5.5747 4.1804 -1.2870 10 6 5.8572 6.3949 -0.5208 11 7 7.0989 6.3170 -1.3018 12 6 8.0246 5.3353 -0.7221 13 6 9.2399 5.1751 -1.6383 14 6 9.9360 6.5296 -1.7963 15 6 11.0992 6.3920 -2.7444 16 1 11.1245 6.9710 -3.6557 17 6 12.1312 5.5268 -2.4485 18 7 13.1465 5.4070 -3.2757 19 14 12.0877 4.5259 -0.8719 20 1 11.4060 3.2313 -1.1261 21 1 13.4755 4.2718 -0.4084 22 1 11.3472 5.2787 0.1722 23 6 8.9369 7.5459 -2.3563 24 6 7.7304 7.6375 -1.4192 25 6 1.9166 3.6055 -0.0002 26 6 1.2904 2.3747 -0.0003 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0195 0.3779 0.0005 31 1 5.1376 2.5701 0.0019 32 1 3.5335 5.6755 0.4778 33 1 5.2334 7.1996 -0.9100 34 1 6.0965 6.5934 0.5238 35 1 8.3521 5.6802 0.2587 36 1 7.5183 4.3756 -0.6190 37 1 8.9144 4.8171 -2.6152 38 1 9.9340 4.4580 -1.2000 39 1 10.2959 6.8697 -0.8252 40 1 13.8724 4.7981 -3.0677 41 1 8.6068 7.2252 -3.3443 42 1 9.4147 8.5228 -2.4309 43 1 7.0106 8.3498 -1.8225 44 1 8.0596 7.9714 -0.4352 45 1 1.3279 4.5110 -0.0005 46 1 0.2119 2.3178 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260376804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:38 Heat of formation + Delta-G solvation = -55.781755 kcal Electronic energy + Delta-G solvation = -26373.644521 eV Core-core repulsion = 22648.880012 eV Total energy + Delta-G solvation = -3724.764509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70905 -40.72122 -39.61230 -38.19804 -35.70013 -35.39518 -33.68268 -32.11093 -31.70008 -30.63307 -29.07085 -27.94898 -26.39236 -24.09486 -23.93132 -23.52854 -22.69666 -21.28062 -20.48558 -19.21633 -18.84057 -18.55068 -18.06704 -17.18248 -16.96827 -16.60093 -16.45006 -16.04335 -15.66413 -15.52372 -15.30604 -14.99465 -14.83749 -14.67799 -14.40032 -14.29631 -13.86491 -13.75955 -13.69031 -13.38585 -13.20571 -12.93601 -12.86941 -12.62160 -12.27390 -12.15862 -12.10038 -11.82896 -11.69163 -11.41790 -11.14719 -10.91568 -10.80379 -10.70703 -10.53234 -10.01037 -9.19902 -8.70439 -8.30698 -6.32786 0.29696 0.32401 1.29112 1.30462 1.41957 1.63288 1.96605 2.30688 2.41485 2.78649 3.02796 3.04917 3.70365 3.85684 3.92108 4.07708 4.16990 4.20090 4.25591 4.34077 4.35246 4.42869 4.43160 4.48434 4.50413 4.59858 4.66104 4.74356 4.75405 4.80843 4.90913 4.94522 5.00020 5.01413 5.18661 5.26052 5.29469 5.32639 5.46997 5.55034 5.67372 5.77926 5.85926 6.09286 6.19175 6.33167 6.45631 6.54542 6.74461 7.24394 7.32113 8.86510 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020658 B = 0.002677 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.062982 B =10456.042831 C =11434.123770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.340 6.340 3 C 0.100 3.900 4 C -0.152 4.152 5 C -0.101 4.101 6 C 0.102 3.898 7 N -0.659 5.659 8 C 0.507 3.493 9 O -0.545 6.545 10 C 0.041 3.959 11 N -0.540 5.540 12 C 0.064 3.936 13 C -0.110 4.110 14 C 0.011 3.989 15 C -0.515 4.515 16 H 0.033 0.967 17 C 0.008 3.992 18 N -0.952 5.952 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.244 1.244 23 C -0.095 4.095 24 C 0.068 3.932 25 C -0.097 4.097 26 C -0.185 4.185 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.116 0.884 32 H 0.429 0.571 33 H 0.142 0.858 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.032 0.968 39 H 0.023 0.977 40 H 0.264 0.736 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.044 0.956 45 H 0.164 0.836 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.241 -1.495 13.957 35.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.254 6.254 3 C 0.055 3.945 4 C -0.172 4.172 5 C -0.122 4.122 6 C 0.008 3.992 7 N -0.307 5.307 8 C 0.296 3.704 9 O -0.421 6.421 10 C -0.089 4.089 11 N -0.265 5.265 12 C -0.064 4.064 13 C -0.148 4.148 14 C -0.007 4.007 15 C -0.553 4.553 16 H 0.051 0.949 17 C -0.188 4.188 18 N -0.593 5.593 19 Si 0.777 3.223 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.168 1.168 23 C -0.133 4.133 24 C -0.059 4.059 25 C -0.117 4.117 26 C -0.204 4.204 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.145 0.855 31 H 0.134 0.866 32 H 0.269 0.731 33 H 0.160 0.840 34 H 0.109 0.891 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.063 0.937 45 H 0.182 0.818 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -31.746 -2.497 12.991 34.392 hybrid contribution 0.920 -0.291 0.914 1.329 sum -30.827 -2.789 13.905 33.933 Atomic orbital electron populations 1.23354 0.76337 1.05519 1.02465 1.86069 1.23607 1.26861 1.88907 1.19131 0.92038 0.85251 0.98122 1.20401 0.92400 0.98155 1.06208 1.20922 1.00127 0.91429 0.99705 1.17795 0.92162 0.85227 1.04025 1.43350 1.22215 1.11358 1.53800 1.21295 0.80942 0.90554 0.77648 1.90741 1.67096 1.44353 1.39907 1.22065 0.92232 0.95019 0.99625 1.61479 1.04902 1.08392 1.51755 1.22084 0.92785 0.96647 0.94872 1.21811 0.95419 0.98763 0.98813 1.19182 0.93101 0.92926 0.95534 1.21445 1.04061 1.23292 1.06482 0.94890 1.25896 0.94923 0.98028 0.99964 1.70053 1.10897 1.39262 1.39051 0.85825 0.75978 0.79485 0.81010 1.20251 1.22416 1.16784 1.21414 0.94738 0.98542 0.98597 1.22140 0.96042 0.88985 0.98724 1.21022 0.91536 0.99204 0.99949 1.21361 1.01356 0.90912 1.06740 0.91177 0.91639 0.86714 0.85492 0.86561 0.73108 0.84021 0.89053 0.94917 0.90767 0.93850 0.94966 0.95867 0.92684 0.93707 0.91782 0.87893 0.93741 0.81826 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.46 10.50 -93.30 -0.98 -7.44 16 3 C 0.10 2.05 6.69 22.50 0.15 2.20 16 4 C -0.15 -3.71 9.98 22.35 0.22 -3.49 16 5 C -0.10 -2.62 8.65 22.38 0.19 -2.43 16 6 C 0.10 2.06 6.28 38.11 0.24 2.30 16 7 N -0.66 -10.75 5.35 -303.38 -1.62 -12.37 16 8 C 0.51 12.12 7.24 87.66 0.63 12.76 16 9 O -0.55 -19.10 12.01 -3.09 -0.04 -19.13 16 10 C 0.04 0.79 5.45 85.56 0.47 1.26 16 11 N -0.54 -16.49 4.40 -900.93 -3.96 -20.46 16 12 C 0.06 2.34 5.11 86.32 0.44 2.78 16 13 C -0.11 -5.09 4.84 30.64 0.15 -4.94 16 14 C 0.01 0.55 1.75 -11.46 -0.02 0.53 16 15 C -0.51 -30.70 9.15 25.60 0.23 -30.46 16 16 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 17 C 0.01 0.51 5.45 84.65 0.46 0.97 16 18 N -0.95 -62.12 13.96 21.45 0.30 -61.82 16 19 Si 0.95 47.73 24.37 68.60 1.67 49.40 16 20 H -0.28 -13.67 6.89 99.48 0.69 -12.98 16 21 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 22 H -0.24 -11.22 6.53 99.48 0.65 -10.57 16 23 C -0.09 -3.74 5.32 30.65 0.16 -3.57 16 24 C 0.07 1.93 5.46 86.33 0.47 2.40 16 25 C -0.10 -1.39 9.96 22.38 0.22 -1.16 16 26 C -0.18 -2.73 9.03 22.35 0.20 -2.52 16 27 H 0.07 0.40 7.66 -2.39 -0.02 0.38 16 28 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 29 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.13 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.12 3.55 6.41 -2.92 -0.02 3.53 16 32 H 0.43 3.03 8.82 -92.71 -0.82 2.21 16 33 H 0.14 1.69 7.99 -2.39 -0.02 1.67 16 34 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 2.82 5.78 -2.39 -0.01 2.81 16 37 H 0.04 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.03 1.56 3.39 -2.39 -0.01 1.55 16 39 H 0.02 1.11 7.19 -2.39 -0.02 1.09 16 40 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.10 2.20 8.02 -2.39 -0.02 2.18 16 44 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 46 H 0.16 1.30 6.29 -2.91 -0.02 1.28 16 Total: -1.00 -82.90 359.85 0.81 -82.09 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.10 Total: 11.85 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 5.34 Total: -22.13 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -5.28 Total: -94.64 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -1.02 Total: -26.57 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.67 Total: 49.40 kcal Total: -82.90 0.81 -82.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260376804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.312 kcal (2) G-P(sol) polarization free energy of solvation -82.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds