Wall clock time and date at job start Tue Mar 31 2020 12:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34767 * 119.99849 * 2 1 4 4 O 1.21285 * 120.00289 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00001 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.50340 * 60.07415 * 5 3 2 7 7 C 1.53126 * 109.50222 * 299.99988 * 5 3 2 8 8 C 1.53124 * 109.15981 * 182.36044 * 7 5 3 9 9 C 1.53037 * 109.27544 * 57.66050 * 8 7 5 10 10 N 1.46852 * 109.52125 * 300.81423 * 9 8 7 11 11 C 1.46901 * 111.00249 * 185.84301 * 10 9 8 12 12 C 1.50699 * 109.46894 * 66.04433 * 11 10 9 13 13 C 1.38299 * 119.92895 * 90.00632 * 12 11 10 14 14 C 1.38100 * 120.06840 * 180.02562 * 13 12 11 15 15 C 1.38882 * 119.93309 * 359.97438 * 14 13 12 16 16 O 1.35741 * 120.06963 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00506 * 5.54159 * 16 15 14 18 18 H 1.07999 * 119.99652 * 354.94101 * 17 16 15 19 19 C 1.38651 * 120.00703 * 174.94177 * 17 16 15 20 20 N 1.31557 * 119.99696 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00329 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47082 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46918 * 299.99594 * 21 19 17 24 24 H 1.48496 * 109.47544 * 59.99564 * 21 19 17 25 25 C 1.38882 * 119.86015 * 0.25490 * 15 14 13 26 26 C 1.38101 * 119.92899 * 359.49348 * 25 15 14 27 27 C 1.46847 * 111.19827 * 61.74258 * 10 9 8 28 28 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46897 * 299.99608 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99954 * 1 2 3 31 31 H 0.96996 * 119.99507 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.51835 * 62.46082 * 7 5 3 33 33 H 1.09001 * 109.52158 * 302.26872 * 7 5 3 34 34 H 1.08997 * 109.50834 * 297.71588 * 8 7 5 35 35 H 1.09001 * 109.52997 * 177.61359 * 8 7 5 36 36 H 1.08995 * 109.46507 * 180.80623 * 9 8 7 37 37 H 1.08999 * 109.46828 * 60.83113 * 9 8 7 38 38 H 1.09005 * 109.46740 * 306.04591 * 11 10 9 39 39 H 1.08998 * 109.47044 * 186.05014 * 11 10 9 40 40 H 1.07995 * 119.96602 * 359.97438 * 13 12 11 41 41 H 1.08001 * 120.03215 * 179.97438 * 14 13 12 42 42 H 0.97004 * 120.00173 * 0.02562 * 20 19 17 43 43 H 1.07999 * 120.03676 * 179.72206 * 25 15 14 44 44 H 1.07997 * 119.96818 * 180.27655 * 26 25 15 45 45 H 1.09007 * 109.45768 * 58.27408 * 27 10 9 46 46 H 1.08998 * 109.46547 * 178.23496 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0094 0.6548 -0.8913 7 6 4.1576 0.4452 1.2491 8 6 5.6876 0.5012 1.2707 9 6 6.1402 1.9628 1.2385 10 7 5.6260 2.6091 0.0242 11 6 6.1547 3.9730 -0.1104 12 6 7.6432 3.9146 -0.3382 13 6 8.1418 3.8420 -1.6261 14 6 9.5054 3.7877 -1.8381 15 6 10.3762 3.8067 -0.7564 16 8 11.7169 3.7530 -0.9616 17 6 12.1430 3.7983 -2.2400 18 1 11.4268 3.7916 -3.0484 19 6 13.5004 3.8536 -2.5170 20 7 14.3728 3.8623 -1.5324 21 14 14.0904 3.9172 -4.2882 22 1 15.5742 3.9716 -4.3140 23 1 13.6266 2.7041 -5.0083 24 1 13.5396 5.1268 -4.9504 25 6 9.8722 3.8748 0.5359 26 6 8.5078 3.9340 0.7412 27 6 4.1577 2.6094 0.0040 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.8314 -0.5947 1.2281 33 1 3.7625 0.9341 2.1396 34 1 6.0833 -0.0216 0.4000 35 1 6.0568 0.0259 2.1795 36 1 7.2293 2.0059 1.2394 37 1 5.7556 2.4816 2.1167 38 1 5.9483 4.5342 0.8010 39 1 5.6766 4.4661 -0.9568 40 1 7.4642 3.8268 -2.4669 41 1 9.8941 3.7306 -2.8441 42 1 14.0664 3.8297 -0.6126 43 1 10.5466 3.8852 1.3794 44 1 8.1153 3.9915 1.7456 45 1 3.7824 3.1251 0.8880 46 1 3.8069 3.1221 -0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264690488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:20 Heat of formation + Delta-G solvation = -48.444547 kcal Electronic energy + Delta-G solvation = -26156.512810 eV Core-core repulsion = 22432.066466 eV Total energy + Delta-G solvation = -3724.446344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.48933 -39.27413 -38.34737 -36.61473 -34.98215 -33.80230 -32.22669 -31.29706 -30.22486 -29.64535 -27.24410 -25.91511 -24.73373 -23.69462 -22.89485 -21.91839 -21.01130 -20.29957 -19.84643 -18.35892 -17.65115 -16.82015 -16.37252 -15.83762 -15.46761 -15.29230 -14.98254 -14.54831 -14.48331 -14.09568 -13.94859 -13.74743 -13.67831 -13.48152 -13.33182 -13.09104 -12.84214 -12.73751 -12.66479 -12.55992 -11.72690 -11.52038 -11.26372 -11.10161 -11.00542 -10.96762 -10.81082 -10.63681 -10.50335 -10.28817 -10.24955 -9.95882 -9.50315 -9.38814 -8.76033 -8.28217 -8.18577 -7.23107 -6.76213 -4.05205 2.16495 2.23533 2.34764 2.85526 3.24523 3.29199 3.45921 3.95682 4.12565 4.34751 4.50013 4.56950 4.67260 4.77964 4.97753 5.02629 5.08128 5.10518 5.15839 5.20633 5.34820 5.35245 5.36599 5.39862 5.50579 5.58265 5.68229 5.72934 5.74508 5.83605 5.84699 5.89189 6.01832 6.05458 6.15741 6.17154 6.38389 6.63902 6.84496 7.02749 7.05822 7.12037 7.17292 7.28372 7.38181 7.58231 7.74580 7.89811 8.40958 8.92993 9.62111 10.67733 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.002283 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.918843 B =12262.157946 C =12522.189779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.519 3.481 4 O -0.539 6.539 5 C -0.104 4.104 6 H 0.107 0.893 7 C -0.109 4.109 8 C -0.115 4.115 9 C 0.049 3.951 10 N -0.533 5.533 11 C 0.115 3.885 12 C -0.175 4.175 13 C -0.049 4.049 14 C -0.231 4.231 15 C 0.158 3.842 16 O -0.203 6.203 17 C -0.471 4.471 18 H 0.084 0.916 19 C 0.009 3.991 20 N -0.882 5.882 21 Si 1.096 2.904 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.196 4.196 26 C -0.069 4.069 27 C 0.077 3.923 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.029 0.971 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.282 0.718 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.349 -8.879 4.254 25.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.389 5.389 3 C 0.305 3.695 4 O -0.415 6.415 5 C -0.125 4.125 6 H 0.125 0.875 7 C -0.147 4.147 8 C -0.153 4.153 9 C -0.079 4.079 10 N -0.257 5.257 11 C -0.012 4.012 12 C -0.176 4.176 13 C -0.068 4.068 14 C -0.250 4.250 15 C 0.105 3.895 16 O -0.108 6.108 17 C -0.547 4.547 18 H 0.101 0.899 19 C -0.196 4.196 20 N -0.514 5.514 21 Si 0.920 3.080 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.216 4.216 26 C -0.087 4.087 27 C -0.052 4.052 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.125 0.875 45 H 0.056 0.944 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.036 -8.315 3.056 23.750 hybrid contribution -1.659 -0.117 1.553 2.276 sum -23.696 -8.432 4.609 25.570 Atomic orbital electron populations 1.21530 0.79735 1.02146 1.02327 1.45831 1.07715 1.08902 1.76483 1.20757 0.90183 0.83461 0.75082 1.90708 1.70579 1.31331 1.48912 1.21343 0.90291 0.99470 1.01432 0.87461 1.21573 0.97047 0.99713 0.96369 1.21580 0.94107 0.96911 1.02689 1.22195 1.01612 0.93928 0.90151 1.61928 1.06273 1.19271 1.38253 1.20765 0.92486 0.87791 1.00147 1.19075 0.93260 1.11893 0.93403 1.20579 0.94217 0.96333 0.95654 1.21172 0.93157 1.11192 0.99475 1.19241 0.84325 0.92679 0.93282 1.83659 1.17127 1.79481 1.30491 1.22198 0.94793 1.57058 0.80625 0.89884 1.26535 0.90197 0.95069 1.07810 1.70576 1.36653 1.42628 1.01514 0.83109 0.76911 0.77094 0.70921 1.19812 1.20728 1.20745 1.20141 0.94884 1.11875 0.94659 1.20473 0.92234 0.98782 0.97241 1.21769 0.87619 0.93858 1.01934 0.90701 0.92303 0.92235 0.76382 0.91530 0.91800 0.90635 0.91168 0.89288 0.95327 0.94847 0.90689 0.87392 0.85531 0.90842 0.86837 0.87450 0.94370 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -5.02 5.62 -67.08 -0.38 -5.40 16 3 C 0.52 5.29 7.16 -10.99 -0.08 5.21 16 4 O -0.54 -7.66 15.99 5.55 0.09 -7.57 16 5 C -0.10 -0.97 2.69 -91.69 -0.25 -1.21 16 6 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 7 C -0.11 -0.86 5.16 -26.60 -0.14 -1.00 16 8 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 9 C 0.05 0.58 5.16 -3.83 -0.02 0.56 16 10 N -0.53 -6.82 4.65 -236.11 -1.10 -7.92 16 11 C 0.11 1.59 5.12 -4.98 -0.03 1.57 16 12 C -0.18 -2.95 4.90 -104.57 -0.51 -3.47 16 13 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 14 C -0.23 -5.07 9.17 -39.39 -0.36 -5.43 16 15 C 0.16 3.81 6.65 -39.10 -0.26 3.55 16 16 O -0.20 -5.74 9.16 0.07 0.00 -5.74 16 17 C -0.47 -13.29 9.49 30.88 0.29 -13.00 16 18 H 0.08 2.21 5.20 -52.49 -0.27 1.93 16 19 C 0.01 0.26 5.49 -17.52 -0.10 0.16 16 20 N -0.88 -26.39 13.70 55.48 0.76 -25.63 16 21 Si 1.10 23.76 29.92 -169.99 -5.09 18.67 16 22 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -4.08 9.99 -39.39 -0.39 -4.47 16 26 C -0.07 -1.20 7.87 -39.61 -0.31 -1.51 16 27 C 0.08 0.89 4.04 -3.84 -0.02 0.88 16 28 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.63 8.30 -40.82 -0.34 1.29 16 32 H 0.07 0.37 7.64 -51.93 -0.40 -0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.22 5.75 -51.93 -0.30 0.92 16 37 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.03 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.07 1.00 7.92 -51.93 -0.41 0.58 16 40 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.13 2.83 5.64 -52.49 -0.30 2.54 16 42 H 0.28 8.62 7.97 -40.82 -0.33 8.29 16 43 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 44 H 0.11 1.59 7.95 -52.49 -0.42 1.17 16 45 H 0.04 0.48 8.08 -51.92 -0.42 0.06 16 46 H 0.08 0.99 7.99 -51.93 -0.41 0.57 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -33.18 371.48 -9.22 -42.39 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.03 Total: 5.15 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.07 Total: -19.55 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.71 Total: -38.95 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.09 Total: 18.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.18 -9.22 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264690488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.053 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds