Wall clock time and date at job start Tue Mar 31 2020 12:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34767 * 119.99849 * 2 1 4 4 O 1.21285 * 120.00289 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00001 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.50340 * 60.07415 * 5 3 2 7 7 C 1.53126 * 109.50222 * 299.99988 * 5 3 2 8 8 C 1.53124 * 109.15981 * 182.36044 * 7 5 3 9 9 C 1.53037 * 109.27544 * 57.66050 * 8 7 5 10 10 N 1.46852 * 109.52125 * 300.81423 * 9 8 7 11 11 C 1.46901 * 111.00249 * 185.84301 * 10 9 8 12 12 C 1.50699 * 109.46894 * 66.04433 * 11 10 9 13 13 C 1.38299 * 119.92895 * 90.00632 * 12 11 10 14 14 C 1.38100 * 120.06840 * 180.02562 * 13 12 11 15 15 C 1.38882 * 119.93309 * 359.97438 * 14 13 12 16 16 O 1.35741 * 120.06963 * 179.97438 * 15 14 13 17 17 C 1.34832 * 117.00506 * 5.54159 * 16 15 14 18 18 H 1.07999 * 119.99652 * 354.94101 * 17 16 15 19 19 C 1.38651 * 120.00703 * 174.94177 * 17 16 15 20 20 N 1.31557 * 119.99696 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00329 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47082 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46918 * 299.99594 * 21 19 17 24 24 H 1.48496 * 109.47544 * 59.99564 * 21 19 17 25 25 C 1.38882 * 119.86015 * 0.25490 * 15 14 13 26 26 C 1.38101 * 119.92899 * 359.49348 * 25 15 14 27 27 C 1.46847 * 111.19827 * 61.74258 * 10 9 8 28 28 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46897 * 299.99608 * 1 2 3 30 30 H 1.09000 * 109.47177 * 59.99954 * 1 2 3 31 31 H 0.96996 * 119.99507 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.51835 * 62.46082 * 7 5 3 33 33 H 1.09001 * 109.52158 * 302.26872 * 7 5 3 34 34 H 1.08997 * 109.50834 * 297.71588 * 8 7 5 35 35 H 1.09001 * 109.52997 * 177.61359 * 8 7 5 36 36 H 1.08995 * 109.46507 * 180.80623 * 9 8 7 37 37 H 1.08999 * 109.46828 * 60.83113 * 9 8 7 38 38 H 1.09005 * 109.46740 * 306.04591 * 11 10 9 39 39 H 1.08998 * 109.47044 * 186.05014 * 11 10 9 40 40 H 1.07995 * 119.96602 * 359.97438 * 13 12 11 41 41 H 1.08001 * 120.03215 * 179.97438 * 14 13 12 42 42 H 0.97004 * 120.00173 * 0.02562 * 20 19 17 43 43 H 1.07999 * 120.03676 * 179.72206 * 25 15 14 44 44 H 1.07997 * 119.96818 * 180.27655 * 26 25 15 45 45 H 1.09007 * 109.45768 * 58.27408 * 27 10 9 46 46 H 1.08998 * 109.46547 * 178.23496 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0094 0.6548 -0.8913 7 6 4.1576 0.4452 1.2491 8 6 5.6876 0.5012 1.2707 9 6 6.1402 1.9628 1.2385 10 7 5.6260 2.6091 0.0242 11 6 6.1547 3.9730 -0.1104 12 6 7.6432 3.9146 -0.3382 13 6 8.1418 3.8420 -1.6261 14 6 9.5054 3.7877 -1.8381 15 6 10.3762 3.8067 -0.7564 16 8 11.7169 3.7530 -0.9616 17 6 12.1430 3.7983 -2.2400 18 1 11.4268 3.7916 -3.0484 19 6 13.5004 3.8536 -2.5170 20 7 14.3728 3.8623 -1.5324 21 14 14.0904 3.9172 -4.2882 22 1 15.5742 3.9716 -4.3140 23 1 13.6266 2.7041 -5.0083 24 1 13.5396 5.1268 -4.9504 25 6 9.8722 3.8748 0.5359 26 6 8.5078 3.9340 0.7412 27 6 4.1577 2.6094 0.0040 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.8314 -0.5947 1.2281 33 1 3.7625 0.9341 2.1396 34 1 6.0833 -0.0216 0.4000 35 1 6.0568 0.0259 2.1795 36 1 7.2293 2.0059 1.2394 37 1 5.7556 2.4816 2.1167 38 1 5.9483 4.5342 0.8010 39 1 5.6766 4.4661 -0.9568 40 1 7.4642 3.8268 -2.4669 41 1 9.8941 3.7306 -2.8441 42 1 14.0664 3.8297 -0.6126 43 1 10.5466 3.8852 1.3794 44 1 8.1153 3.9915 1.7456 45 1 3.7824 3.1251 0.8880 46 1 3.8069 3.1221 -0.8916 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264690488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:19 Heat of formation + Delta-G solvation = -71.755033 kcal Electronic energy + Delta-G solvation = -26157.523628 eV Core-core repulsion = 22432.066466 eV Total energy + Delta-G solvation = -3725.457163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34776 -40.86855 -39.52154 -38.16835 -35.69808 -34.90709 -34.14118 -32.18414 -31.79550 -31.07931 -27.88854 -27.38388 -26.44742 -24.60194 -23.89152 -23.53608 -22.22450 -21.43681 -20.65934 -20.22148 -18.73330 -18.34193 -17.18325 -17.00328 -16.63746 -16.40023 -16.18826 -15.73297 -15.63181 -15.58849 -15.35524 -15.21637 -14.97226 -14.64960 -14.38174 -14.32965 -14.12766 -13.66193 -13.49019 -13.10895 -13.02413 -12.89177 -12.61695 -12.46467 -12.37841 -12.34205 -12.00766 -11.93071 -11.83611 -11.63087 -11.37430 -11.25302 -10.78898 -10.74145 -10.13819 -9.81642 -9.31649 -8.97355 -8.91600 -6.23074 0.54117 0.61366 1.49364 1.58751 1.61677 1.79421 2.20497 2.36637 2.74783 3.04705 3.25683 3.35594 3.61224 3.75794 3.88650 3.96269 4.01932 4.13784 4.20162 4.25352 4.36268 4.41304 4.49346 4.55026 4.60301 4.61782 4.62580 4.71661 4.77877 4.80248 4.94274 4.95192 4.98047 5.00289 5.07966 5.19332 5.23071 5.25464 5.39602 5.44138 5.51826 5.72250 5.77404 6.02922 6.10551 6.17205 6.30602 6.52468 6.87595 7.23227 7.63974 8.51689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026612 B = 0.002283 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.918843 B =12262.157946 C =12522.189779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.722 5.722 3 C 0.517 3.483 4 O -0.586 6.586 5 C -0.098 4.098 6 H 0.117 0.883 7 C -0.102 4.102 8 C -0.112 4.112 9 C 0.044 3.956 10 N -0.538 5.538 11 C 0.115 3.885 12 C -0.146 4.146 13 C -0.049 4.049 14 C -0.240 4.240 15 C 0.116 3.884 16 O -0.253 6.253 17 C -0.486 4.486 18 H 0.091 0.909 19 C -0.046 4.046 20 N -0.917 5.917 21 Si 1.145 2.855 22 H -0.274 1.274 23 H -0.259 1.259 24 H -0.261 1.261 25 C -0.202 4.202 26 C -0.058 4.058 27 C 0.080 3.920 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.419 0.581 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.136 0.864 41 H 0.116 0.884 42 H 0.260 0.740 43 H 0.114 0.886 44 H 0.143 0.857 45 H 0.028 0.972 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.668 -10.343 4.084 28.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.374 5.374 3 C 0.304 3.696 4 O -0.467 6.467 5 C -0.119 4.119 6 H 0.135 0.865 7 C -0.139 4.139 8 C -0.149 4.149 9 C -0.083 4.083 10 N -0.262 5.262 11 C -0.012 4.012 12 C -0.147 4.147 13 C -0.068 4.068 14 C -0.259 4.259 15 C 0.067 3.933 16 O -0.161 6.161 17 C -0.562 4.562 18 H 0.108 0.892 19 C -0.242 4.242 20 N -0.552 5.552 21 Si 0.960 3.040 22 H -0.198 1.198 23 H -0.184 1.184 24 H -0.186 1.186 25 C -0.222 4.222 26 C -0.076 4.076 27 C -0.048 4.048 28 H 0.129 0.871 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.255 0.745 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.104 0.896 40 H 0.154 0.846 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.161 0.839 45 H 0.047 0.953 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.430 -9.833 2.907 27.419 hybrid contribution -1.048 0.310 1.770 2.081 sum -26.478 -9.523 4.678 28.524 Atomic orbital electron populations 1.21666 0.78938 1.04207 1.01297 1.45755 1.08315 1.08695 1.74611 1.20887 0.90468 0.83628 0.74604 1.90694 1.71405 1.33117 1.51438 1.21285 0.89824 0.98132 1.02677 0.86516 1.21551 0.95784 1.01310 0.95291 1.21560 0.95118 0.95015 1.03241 1.22261 1.00386 0.95753 0.89948 1.61887 1.07098 1.18252 1.38987 1.20778 0.89978 0.89087 1.01392 1.19521 0.95238 1.07437 0.92510 1.20884 0.92992 0.95398 0.97489 1.21253 0.94552 1.11625 0.98466 1.19811 0.83549 0.94693 0.95286 1.83639 1.19328 1.82636 1.30449 1.22564 0.95402 1.56905 0.81291 0.89206 1.28381 0.90518 0.93956 1.11331 1.70714 1.36923 1.46776 1.00827 0.82588 0.76451 0.78737 0.66189 1.19843 1.18399 1.18579 1.20410 0.96553 1.11617 0.93578 1.20836 0.90665 0.96807 0.99287 1.21712 0.86518 0.95491 1.01050 0.87094 0.93285 0.93381 0.74455 0.88466 0.92146 0.91125 0.89700 0.91238 0.94740 0.93570 0.89564 0.84588 0.86648 0.93203 0.86766 0.83939 0.95340 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.76 10.70 127.77 1.37 2.12 16 2 N -0.72 -7.63 5.62 -484.52 -2.72 -10.35 16 3 C 0.52 9.36 7.16 87.66 0.63 9.99 16 4 O -0.59 -16.02 15.99 -3.05 -0.05 -16.07 16 5 C -0.10 -1.54 2.69 -11.49 -0.03 -1.57 16 6 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 7 C -0.10 -1.23 5.16 30.68 0.16 -1.07 16 8 C -0.11 -1.72 6.09 30.65 0.19 -1.54 16 9 C 0.04 0.92 5.16 86.32 0.45 1.37 16 10 N -0.54 -12.21 4.65 -900.92 -4.19 -16.40 16 11 C 0.11 2.81 5.12 85.56 0.44 3.25 16 12 C -0.15 -4.56 4.90 -19.83 -0.10 -4.65 16 13 C -0.05 -1.73 9.69 22.25 0.22 -1.52 16 14 C -0.24 -10.65 9.17 22.39 0.21 -10.44 16 15 C 0.12 5.81 6.65 22.58 0.15 5.96 16 16 O -0.25 -15.16 9.16 -22.66 -0.21 -15.37 16 17 C -0.49 -28.72 9.49 67.92 0.64 -28.08 16 18 H 0.09 4.96 5.20 -2.91 -0.02 4.95 16 19 C -0.05 -2.67 5.49 84.83 0.47 -2.20 16 20 N -0.92 -57.90 13.70 21.61 0.30 -57.61 16 21 Si 1.14 48.56 29.92 68.60 2.05 50.62 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 C -0.20 -8.48 9.99 22.39 0.22 -8.26 16 26 C -0.06 -1.89 7.87 22.25 0.18 -1.72 16 27 C 0.08 1.69 4.04 86.32 0.35 2.04 16 28 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.42 1.68 8.30 -92.71 -0.77 0.91 16 32 H 0.10 0.62 7.64 -2.39 -0.02 0.60 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.73 5.75 -2.39 -0.01 1.71 16 37 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.05 1.06 8.06 -2.38 -0.02 1.04 16 39 H 0.09 1.99 7.92 -2.39 -0.02 1.97 16 40 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 41 H 0.12 5.30 5.64 -2.91 -0.02 5.29 16 42 H 0.26 17.07 7.97 -92.71 -0.74 16.33 16 43 H 0.11 4.68 8.06 -2.91 -0.02 4.65 16 44 H 0.14 3.73 7.95 -2.91 -0.02 3.70 16 45 H 0.03 0.66 8.08 -2.38 -0.02 0.64 16 46 H 0.07 1.62 7.99 -2.39 -0.02 1.61 16 Total: -1.00 -77.81 371.48 0.96 -76.85 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.25 Total: 24.64 kcal Atomic # 6 Polarization: -41.84 SS G_CDS: 5.52 Total: -36.31 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -6.61 Total: -84.36 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.26 Total: -31.44 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.62 kcal Total: -77.81 0.96 -76.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264690488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.096 kcal (2) G-P(sol) polarization free energy of solvation -77.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds