Wall clock time and date at job start Tue Mar 31 2020 12:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35911 * 117.00186 * 2 1 4 4 C 1.38849 * 119.98183 * 0.03194 * 3 2 1 5 5 C 1.38248 * 120.23526 * 180.02562 * 4 3 2 6 6 C 1.38003 * 120.20734 * 359.71070 * 5 4 3 7 7 C 1.39559 * 119.96574 * 0.54217 * 6 5 4 8 8 C 1.47862 * 120.12023 * 179.73843 * 7 6 5 9 9 O 1.21550 * 120.00429 * 179.72063 * 8 7 6 10 10 N 1.34781 * 119.99511 * 359.72543 * 8 7 6 11 11 C 1.46505 * 119.99614 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46815 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.49909 * 55.00312 * 12 11 10 14 14 C 1.53048 * 109.49763 * 175.06125 * 12 11 10 15 15 C 1.53042 * 109.53683 * 181.31408 * 14 12 11 16 16 C 1.53188 * 109.31531 * 298.63665 * 15 14 12 17 17 N 1.46926 * 108.77370 * 54.63794 * 16 15 14 18 18 C 1.36934 * 120.63049 * 126.43452 * 17 16 15 19 19 H 1.08001 * 120.00202 * 207.65961 * 18 17 16 20 20 C 1.38811 * 120.00022 * 27.66395 * 18 17 16 21 21 N 1.31620 * 120.00361 * 17.35948 * 20 18 17 22 22 Si 1.86802 * 120.00102 * 197.36720 * 20 18 17 23 23 H 1.48498 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47494 * 119.99477 * 22 20 18 25 25 H 1.48504 * 109.46890 * 239.99730 * 22 20 18 26 26 C 1.46934 * 118.76465 * 306.41082 * 17 16 15 27 27 C 1.38452 * 119.98736 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47302 * 59.99682 * 1 2 3 29 29 H 1.09008 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46888 * 299.99270 * 1 2 3 31 31 H 1.07996 * 119.88021 * 359.96933 * 4 3 2 32 32 H 1.07996 * 119.89415 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.01854 * 180.28674 * 6 5 4 34 34 H 0.96999 * 120.00301 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.47035 * 299.99965 * 11 10 8 36 36 H 1.08991 * 109.47004 * 59.99575 * 11 10 8 37 37 H 1.08993 * 109.45785 * 301.33717 * 14 12 11 38 38 H 1.09004 * 109.45425 * 61.31165 * 14 12 11 39 39 H 1.08998 * 109.49836 * 58.59428 * 15 14 12 40 40 H 1.09001 * 109.49179 * 178.68321 * 15 14 12 41 41 H 1.09001 * 109.58861 * 174.42287 * 16 15 14 42 42 H 1.08998 * 109.58931 * 294.85081 * 16 15 14 43 43 H 0.96995 * 120.00339 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.56181 * 293.78429 * 26 17 16 45 45 H 1.08997 * 109.61500 * 173.36177 * 26 17 16 46 46 H 1.08004 * 120.10280 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3752 0.0007 5 6 1.9117 3.6098 0.0001 6 6 3.2892 3.6930 0.0050 7 6 4.0580 2.5283 -0.0010 8 6 5.5341 2.6136 -0.0017 9 8 6.2017 1.5978 -0.0019 10 7 6.1395 3.8178 -0.0022 11 6 7.6021 3.9023 -0.0034 12 6 8.0280 5.3718 -0.0030 13 1 7.5640 5.8848 0.8394 14 6 9.5508 5.4623 0.1199 15 6 9.9751 6.9323 0.1533 16 6 9.5543 7.6110 -1.1540 17 7 8.1134 7.4033 -1.3521 18 6 7.2788 8.4666 -1.5710 19 1 6.2402 8.4065 -1.2810 20 6 7.7676 9.6217 -2.1656 21 7 8.9078 9.5920 -2.8224 22 14 6.8074 11.2186 -2.0335 23 1 5.5677 10.9872 -1.2493 24 1 7.6403 12.2423 -1.3529 25 1 6.4503 11.6954 -3.3938 26 6 7.5844 6.0331 -1.3117 27 6 3.4287 1.2831 -0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2111 2.3161 0.0007 32 1 1.3179 4.5118 0.0011 33 1 3.7721 4.6591 0.0092 34 1 5.6068 4.6284 -0.0016 35 1 7.9953 3.4102 0.8862 36 1 7.9937 3.4103 -0.8937 37 1 9.8708 4.9709 1.0386 38 1 10.0139 4.9702 -0.7355 39 1 9.4928 7.4312 0.9939 40 1 11.0576 6.9960 0.2644 41 1 9.7649 8.6789 -1.0956 42 1 10.1046 7.1730 -1.9867 43 1 9.2496 10.3992 -3.2376 44 1 7.9736 5.4665 -2.1576 45 1 6.4957 6.0597 -1.3570 46 1 4.0183 0.3782 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266105950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:48 Heat of formation + Delta-G solvation = -34.235952 kcal Electronic energy + Delta-G solvation = -26230.724476 eV Core-core repulsion = 22506.894263 eV Total energy + Delta-G solvation = -3723.830213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62528 -39.53300 -37.90316 -37.19330 -34.87839 -33.06536 -31.55343 -30.93812 -30.45897 -29.85245 -27.64258 -25.77969 -25.28710 -23.43854 -22.66522 -22.09505 -20.99054 -20.42627 -19.22702 -18.57054 -16.83571 -16.69603 -16.36745 -16.21815 -16.08060 -15.53183 -15.29132 -14.84516 -14.23872 -14.14636 -13.89044 -13.76627 -13.63981 -13.43658 -12.91703 -12.80239 -12.53823 -12.35239 -12.22810 -12.20886 -12.06442 -11.41865 -11.31624 -11.23532 -11.04446 -10.74775 -10.50338 -10.23991 -10.19731 -10.02764 -9.90877 -9.58384 -9.43787 -9.31141 -8.92073 -8.53987 -8.49205 -6.70334 -5.81586 -3.24235 0.61693 1.14996 2.78995 2.81881 3.32837 3.34245 3.42110 3.43784 3.69179 4.45215 4.46383 4.50019 4.73047 4.78041 4.80735 4.88749 5.06973 5.10204 5.15920 5.26006 5.29213 5.42466 5.45097 5.60393 5.66888 5.82197 5.91175 5.96055 5.98807 6.08513 6.11320 6.22189 6.30543 6.32869 6.36315 6.49057 6.57707 6.68943 6.75768 6.84579 6.94683 7.05203 7.38369 7.55596 7.65562 7.76042 8.22724 8.41566 9.18007 9.81682 10.38431 11.26662 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002844 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.982285 B = 9843.158899 C =11392.894799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.316 6.316 3 C 0.117 3.883 4 C -0.187 4.187 5 C -0.085 4.085 6 C -0.121 4.121 7 C -0.092 4.092 8 C 0.556 3.444 9 O -0.540 6.540 10 N -0.716 5.716 11 C 0.127 3.873 12 C -0.118 4.118 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.168 3.832 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.154 3.846 27 C -0.094 4.094 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.403 0.597 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.087 0.913 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.019 0.981 45 H 0.049 0.951 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.662 -14.132 7.468 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.072 3.928 4 C -0.206 4.206 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.095 4.095 8 C 0.342 3.658 9 O -0.418 6.418 10 N -0.367 5.367 11 C 0.003 3.997 12 C -0.139 4.139 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.027 3.973 27 C -0.113 4.113 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.068 0.932 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.001 -14.883 7.363 21.089 hybrid contribution -0.989 1.470 -0.033 1.772 sum -13.990 -13.413 7.330 20.721 Atomic orbital electron populations 1.23078 0.78274 1.04085 1.01390 1.86098 1.21425 1.26593 1.88818 1.18856 0.92020 0.84412 0.97548 1.21429 1.00269 0.92357 1.06514 1.20912 0.94349 0.97287 0.97801 1.21317 0.94128 0.97785 1.00774 1.19752 0.93158 0.93435 1.03125 1.18159 0.87086 0.83738 0.76769 1.90765 1.66029 1.34999 1.50014 1.45996 1.08529 1.08007 1.74202 1.21512 0.78417 0.97762 1.01993 1.21963 0.97296 0.92848 1.01767 0.90827 1.21342 0.94147 0.97823 1.00469 1.22170 0.98996 0.95140 1.01773 1.20807 0.83533 1.00638 0.90738 1.44055 1.04122 1.00339 1.82887 1.19191 0.93346 0.92477 1.33246 0.91700 1.25040 0.97814 0.99498 0.97318 1.70048 1.21593 1.27365 1.35515 0.86247 0.79351 0.83954 0.77342 1.20272 1.21562 1.21754 1.20901 0.96767 0.87111 0.92550 1.20454 0.91261 0.98315 1.01303 0.92540 0.88131 0.92583 0.85100 0.84897 0.85015 0.76065 0.91737 0.91331 0.93381 0.92425 0.92751 0.93159 0.89518 0.96431 0.93661 0.96280 0.93213 0.83841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.19 10.49 -19.46 -0.20 -3.40 16 3 C 0.12 1.27 6.68 -39.28 -0.26 1.01 16 4 C -0.19 -1.68 9.03 -39.35 -0.36 -2.03 16 5 C -0.09 -0.77 10.03 -39.66 -0.40 -1.17 16 6 C -0.12 -1.28 9.54 -39.18 -0.37 -1.65 16 7 C -0.09 -1.16 5.87 -104.99 -0.62 -1.78 16 8 C 0.56 8.26 7.77 -12.32 -0.10 8.16 16 9 O -0.54 -9.71 16.35 5.32 0.09 -9.62 16 10 N -0.72 -9.79 5.28 -61.24 -0.32 -10.11 16 11 C 0.13 1.85 5.07 -4.04 -0.02 1.83 16 12 C -0.12 -1.91 2.37 -90.50 -0.21 -2.12 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.10 -1.62 5.17 -26.68 -0.14 -1.75 16 15 C -0.14 -2.62 6.08 -26.61 -0.16 -2.79 16 16 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 17 N -0.59 -14.31 3.00 -172.32 -0.52 -14.82 16 18 C -0.25 -6.71 9.58 -15.06 -0.14 -6.85 16 19 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 20 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 21 N -0.90 -25.79 11.19 55.49 0.62 -25.17 16 22 Si 0.90 21.18 29.59 -169.99 -5.03 16.15 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.15 3.04 5.60 -3.71 -0.02 3.02 16 27 C -0.09 -1.18 9.53 -39.02 -0.37 -1.55 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.83 6.28 -52.49 -0.33 0.50 16 32 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.13 1.21 6.40 -52.48 -0.34 0.88 16 34 H 0.40 4.89 5.73 -40.82 -0.23 4.66 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.05 0.94 7.14 -51.93 -0.37 0.56 16 46 H 0.14 1.88 7.65 -52.48 -0.40 1.48 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -32.05 369.79 -9.06 -41.11 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -6.98 Total: 2.95 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.29 Total: -2.66 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: -0.22 Total: -50.10 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.12 Total: -13.02 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.05 -9.06 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266105950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.870 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds