Wall clock time and date at job start Tue Mar 31 2020 12:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35911 * 117.00186 * 2 1 4 4 C 1.38849 * 119.98183 * 0.03194 * 3 2 1 5 5 C 1.38248 * 120.23526 * 180.02562 * 4 3 2 6 6 C 1.38003 * 120.20734 * 359.71070 * 5 4 3 7 7 C 1.39559 * 119.96574 * 0.54217 * 6 5 4 8 8 C 1.47862 * 120.12023 * 179.73843 * 7 6 5 9 9 O 1.21550 * 120.00429 * 179.72063 * 8 7 6 10 10 N 1.34781 * 119.99511 * 359.72543 * 8 7 6 11 11 C 1.46505 * 119.99614 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46815 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.49909 * 55.00312 * 12 11 10 14 14 C 1.53048 * 109.49763 * 175.06125 * 12 11 10 15 15 C 1.53042 * 109.53683 * 181.31408 * 14 12 11 16 16 C 1.53188 * 109.31531 * 298.63665 * 15 14 12 17 17 N 1.46926 * 108.77370 * 54.63794 * 16 15 14 18 18 C 1.36934 * 120.63049 * 126.43452 * 17 16 15 19 19 H 1.08001 * 120.00202 * 207.65961 * 18 17 16 20 20 C 1.38811 * 120.00022 * 27.66395 * 18 17 16 21 21 N 1.31620 * 120.00361 * 17.35948 * 20 18 17 22 22 Si 1.86802 * 120.00102 * 197.36720 * 20 18 17 23 23 H 1.48498 * 109.46909 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47494 * 119.99477 * 22 20 18 25 25 H 1.48504 * 109.46890 * 239.99730 * 22 20 18 26 26 C 1.46934 * 118.76465 * 306.41082 * 17 16 15 27 27 C 1.38452 * 119.98736 * 180.02562 * 3 2 1 28 28 H 1.08993 * 109.47302 * 59.99682 * 1 2 3 29 29 H 1.09008 * 109.47290 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46888 * 299.99270 * 1 2 3 31 31 H 1.07996 * 119.88021 * 359.96933 * 4 3 2 32 32 H 1.07996 * 119.89415 * 180.02562 * 5 4 3 33 33 H 1.08004 * 120.01854 * 180.28674 * 6 5 4 34 34 H 0.96999 * 120.00301 * 0.02562 * 10 8 7 35 35 H 1.09006 * 109.47035 * 299.99965 * 11 10 8 36 36 H 1.08991 * 109.47004 * 59.99575 * 11 10 8 37 37 H 1.08993 * 109.45785 * 301.33717 * 14 12 11 38 38 H 1.09004 * 109.45425 * 61.31165 * 14 12 11 39 39 H 1.08998 * 109.49836 * 58.59428 * 15 14 12 40 40 H 1.09001 * 109.49179 * 178.68321 * 15 14 12 41 41 H 1.09001 * 109.58861 * 174.42287 * 16 15 14 42 42 H 1.08998 * 109.58931 * 294.85081 * 16 15 14 43 43 H 0.96995 * 120.00339 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.56181 * 293.78429 * 26 17 16 45 45 H 1.08997 * 109.61500 * 173.36177 * 26 17 16 46 46 H 1.08004 * 120.10280 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3752 0.0007 5 6 1.9117 3.6098 0.0001 6 6 3.2892 3.6930 0.0050 7 6 4.0580 2.5283 -0.0010 8 6 5.5341 2.6136 -0.0017 9 8 6.2017 1.5978 -0.0019 10 7 6.1395 3.8178 -0.0022 11 6 7.6021 3.9023 -0.0034 12 6 8.0280 5.3718 -0.0030 13 1 7.5640 5.8848 0.8394 14 6 9.5508 5.4623 0.1199 15 6 9.9751 6.9323 0.1533 16 6 9.5543 7.6110 -1.1540 17 7 8.1134 7.4033 -1.3521 18 6 7.2788 8.4666 -1.5710 19 1 6.2402 8.4065 -1.2810 20 6 7.7676 9.6217 -2.1656 21 7 8.9078 9.5920 -2.8224 22 14 6.8074 11.2186 -2.0335 23 1 5.5677 10.9872 -1.2493 24 1 7.6403 12.2423 -1.3529 25 1 6.4503 11.6954 -3.3938 26 6 7.5844 6.0331 -1.3117 27 6 3.4287 1.2831 -0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 0.2111 2.3161 0.0007 32 1 1.3179 4.5118 0.0011 33 1 3.7721 4.6591 0.0092 34 1 5.6068 4.6284 -0.0016 35 1 7.9953 3.4102 0.8862 36 1 7.9937 3.4103 -0.8937 37 1 9.8708 4.9709 1.0386 38 1 10.0139 4.9702 -0.7355 39 1 9.4928 7.4312 0.9939 40 1 11.0576 6.9960 0.2644 41 1 9.7649 8.6789 -1.0956 42 1 10.1046 7.1730 -1.9867 43 1 9.2496 10.3992 -3.2376 44 1 7.9736 5.4665 -2.1576 45 1 6.4957 6.0597 -1.3570 46 1 4.0183 0.3782 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266105950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:47 Heat of formation + Delta-G solvation = -54.037970 kcal Electronic energy + Delta-G solvation = -26231.583156 eV Core-core repulsion = 22506.894263 eV Total energy + Delta-G solvation = -3724.688893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.51819 -40.53132 -39.36457 -38.06270 -36.32235 -34.71485 -32.56158 -32.27943 -31.98397 -30.95620 -28.17146 -27.29220 -26.96588 -24.49291 -23.76608 -23.45272 -22.45349 -21.51165 -20.65589 -19.55030 -18.62509 -17.62598 -17.30642 -17.10234 -16.80944 -16.71725 -16.52265 -16.43403 -15.76084 -15.43682 -15.05434 -15.00700 -14.74990 -14.53742 -14.44878 -13.99599 -13.79313 -13.73980 -13.40027 -13.17356 -13.00239 -12.89590 -12.78016 -12.50687 -12.22647 -12.04156 -11.96167 -11.93410 -11.81317 -11.57119 -11.38423 -11.10746 -11.00075 -10.52456 -10.26723 -9.98035 -9.30675 -8.66885 -7.84923 -5.30433 -0.25127 0.36298 1.48051 1.50218 1.60227 1.78462 1.97988 2.44880 2.52851 2.80369 3.30040 3.57461 3.64105 3.78072 3.97720 4.01669 4.04523 4.07260 4.13639 4.23834 4.41634 4.42238 4.43979 4.48501 4.58287 4.63395 4.74936 4.76811 4.87787 4.88532 4.91055 5.01718 5.11950 5.17578 5.22079 5.26226 5.33371 5.34809 5.37878 5.46053 5.58660 5.61303 5.68846 5.79867 6.37441 6.40402 6.46734 7.10812 7.16560 7.87949 8.40171 9.21596 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002844 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.982285 B = 9843.158899 C =11392.894799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.176 4.176 5 C -0.081 4.081 6 C -0.123 4.123 7 C -0.109 4.109 8 C 0.555 3.445 9 O -0.580 6.580 10 N -0.709 5.709 11 C 0.136 3.864 12 C -0.100 4.100 13 H 0.080 0.920 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.293 1.293 25 H -0.296 1.296 26 C 0.152 3.848 27 C -0.118 4.118 28 H 0.068 0.932 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.145 0.855 34 H 0.412 0.588 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.052 0.948 42 H -0.009 1.009 43 H 0.248 0.752 44 H 0.005 0.995 45 H 0.058 0.942 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.271 -14.064 8.974 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.195 4.195 5 C -0.099 4.099 6 C -0.142 4.142 7 C -0.112 4.112 8 C 0.343 3.657 9 O -0.461 6.461 10 N -0.360 5.360 11 C 0.012 3.988 12 C -0.120 4.120 13 H 0.098 0.902 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.046 3.954 17 N -0.332 5.332 18 C -0.388 4.388 19 H 0.091 0.909 20 C -0.250 4.250 21 N -0.584 5.584 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.220 1.220 25 H -0.223 1.223 26 C 0.026 3.974 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.181 0.819 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.009 0.991 43 H 0.057 0.943 44 H 0.022 0.978 45 H 0.077 0.923 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.642 -14.824 8.889 23.312 hybrid contribution -0.269 1.375 -0.538 1.501 sum -15.911 -13.449 8.351 22.445 Atomic orbital electron populations 1.23410 0.75958 1.05775 1.02653 1.86077 1.23872 1.26517 1.88715 1.18933 0.91547 0.85543 0.97425 1.21801 1.01797 0.91455 1.04424 1.21310 0.93840 0.98546 0.96196 1.21516 0.94980 0.97369 1.00353 1.19610 0.91864 0.94424 1.05307 1.18529 0.88082 0.83277 0.75786 1.90735 1.67085 1.36253 1.52018 1.45913 1.08234 1.08184 1.73696 1.21345 0.79027 0.96378 1.02056 1.21722 0.97444 0.93345 0.99508 0.90197 1.21344 0.93960 0.96225 1.02046 1.21995 1.00181 0.96169 0.98513 1.20643 0.83362 0.98884 0.92490 1.44329 1.04210 1.01626 1.83058 1.19593 0.93972 0.93217 1.32003 0.90880 1.25820 0.98947 1.02603 0.97621 1.70211 1.23436 1.27702 1.37059 0.85223 0.78529 0.79895 0.76907 1.18484 1.22008 1.22325 1.21031 0.97203 0.85102 0.94062 1.20426 0.92420 0.97740 1.03149 0.91292 0.86484 0.91124 0.81914 0.81756 0.83755 0.75041 0.90670 0.92343 0.90095 0.92712 0.92678 0.91300 0.92953 0.99051 0.94276 0.97751 0.92339 0.85828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.48 10.49 -92.54 -0.97 -7.45 16 3 C 0.11 2.29 6.68 22.47 0.15 2.44 16 4 C -0.18 -2.62 9.03 22.42 0.20 -2.42 16 5 C -0.08 -1.20 10.03 22.22 0.22 -0.98 16 6 C -0.12 -2.36 9.54 22.53 0.21 -2.14 16 7 C -0.11 -2.74 5.87 -20.10 -0.12 -2.86 16 8 C 0.55 16.51 7.77 86.79 0.67 17.19 16 9 O -0.58 -21.40 16.35 -3.87 -0.06 -21.46 16 10 N -0.71 -18.64 5.28 -465.95 -2.46 -21.10 16 11 C 0.14 3.78 5.07 86.38 0.44 4.22 16 12 C -0.10 -3.05 2.37 -10.72 -0.03 -3.08 16 13 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 14 C -0.10 -2.97 5.17 30.62 0.16 -2.81 16 15 C -0.13 -4.65 6.08 30.67 0.19 -4.46 16 16 C 0.17 8.19 5.31 86.36 0.46 8.65 16 17 N -0.61 -29.56 3.00 -699.10 -2.09 -31.66 16 18 C -0.26 -13.63 9.58 84.03 0.81 -12.83 16 19 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 20 C -0.05 -3.01 4.91 84.86 0.42 -2.59 16 21 N -0.94 -55.25 11.19 21.65 0.24 -55.01 16 22 Si 0.97 43.75 29.59 68.60 2.03 45.78 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.30 -13.55 7.11 99.48 0.71 -12.85 16 26 C 0.15 5.92 5.60 86.36 0.48 6.40 16 27 C -0.12 -3.02 9.53 22.63 0.22 -2.80 16 28 H 0.07 0.44 7.66 -2.39 -0.02 0.43 16 29 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.42 7.66 -2.39 -0.02 0.41 16 31 H 0.16 1.33 6.28 -2.91 -0.02 1.31 16 32 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.14 2.29 6.40 -2.91 -0.02 2.27 16 34 H 0.41 9.30 5.73 -92.71 -0.53 8.77 16 35 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 41 H 0.05 2.84 6.04 -2.39 -0.01 2.83 16 42 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.06 2.14 7.14 -2.39 -0.02 2.12 16 46 H 0.12 3.53 7.65 -2.91 -0.02 3.51 16 Total: -1.00 -71.87 369.79 2.73 -69.14 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.45 Total: 18.57 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.60 Total: 3.19 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.31 Total: -107.77 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: -1.03 Total: -28.91 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.87 2.73 -69.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266105950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.102 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds