Wall clock time and date at job start Tue Mar 31 2020 12:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42903 * 113.99901 * 2 1 4 4 H 1.08991 * 110.27637 * 332.08824 * 3 2 1 5 5 C 1.54594 * 110.30521 * 94.28722 * 3 2 1 6 6 C 1.54941 * 102.92199 * 140.87224 * 5 3 2 7 7 N 1.48538 * 103.22572 * 322.58429 * 6 5 3 8 8 C 1.46900 * 111.00239 * 159.72130 * 7 6 5 9 9 C 1.50706 * 109.47037 * 52.59751 * 8 7 6 10 10 O 1.21284 * 119.99828 * 6.75914 * 9 8 7 11 11 N 1.34769 * 119.99778 * 186.75043 * 9 8 7 12 12 C 1.46505 * 119.99842 * 184.94877 * 11 9 8 13 13 C 1.50708 * 109.46662 * 269.99983 * 12 11 9 14 14 H 1.07994 * 120.00219 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99598 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00229 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99868 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47055 * 90.00063 * 17 15 13 19 19 H 1.48504 * 109.47088 * 210.00093 * 17 15 13 20 20 H 1.48505 * 109.47106 * 329.99883 * 17 15 13 21 21 C 1.39921 * 120.00525 * 4.94600 * 11 9 8 22 22 C 1.38869 * 120.07250 * 249.61985 * 21 11 9 23 23 C 1.38125 * 119.92862 * 179.73901 * 22 21 11 24 24 C 1.38279 * 120.06679 * 0.53388 * 23 22 21 25 25 C 1.38282 * 120.14547 * 359.72000 * 24 23 22 26 26 C 1.38114 * 120.06875 * 0.02562 * 25 24 23 27 27 C 1.47896 * 105.82126 * 39.20480 * 7 6 5 28 28 H 1.08995 * 109.47496 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47101 * 300.00183 * 1 2 3 30 30 H 1.08998 * 109.47153 * 59.99747 * 1 2 3 31 31 H 1.09005 * 110.72393 * 259.22678 * 5 3 2 32 32 H 1.08998 * 110.73013 * 22.33515 * 5 3 2 33 33 H 1.08999 * 110.66705 * 204.15085 * 6 5 3 34 34 H 1.09003 * 110.66868 * 81.01687 * 6 5 3 35 35 H 1.09005 * 109.46822 * 292.60682 * 8 7 6 36 36 H 1.08993 * 109.47563 * 172.60177 * 8 7 6 37 37 H 1.08999 * 109.47534 * 150.00461 * 12 11 9 38 38 H 1.08996 * 109.47431 * 29.99570 * 12 11 9 39 39 H 0.97007 * 119.99844 * 180.02562 * 16 15 13 40 40 H 1.07993 * 120.03639 * 359.97438 * 22 21 11 41 41 H 1.07993 * 119.96496 * 180.25435 * 23 22 21 42 42 H 1.08007 * 119.92633 * 179.70179 * 24 23 22 43 43 H 1.08003 * 119.96662 * 180.02562 * 25 24 23 44 44 H 1.08000 * 120.03668 * 180.02562 * 26 25 24 45 45 H 1.09006 * 109.91802 * 94.02018 * 27 7 6 46 46 H 1.08998 * 109.92006 * 215.12272 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3385 2.0180 -0.4786 5 6 2.3274 1.7515 1.4458 6 6 3.6858 2.4810 1.2932 7 7 4.3955 1.6679 0.2727 8 6 5.4768 2.4385 -0.3556 9 6 6.3676 3.0175 0.7132 10 8 6.2000 2.7102 1.8744 11 7 7.3506 3.8766 0.3786 12 6 8.2846 4.3552 1.4008 13 6 7.7419 5.6140 2.0270 14 1 6.7962 6.0174 1.6964 15 6 8.4528 6.2507 3.0222 16 7 9.6046 5.7598 3.4245 17 14 7.7798 7.8106 3.7989 18 1 6.9376 7.4570 4.9697 19 1 8.9075 8.6694 4.2416 20 1 6.9594 8.5455 2.8028 21 6 7.4793 4.3114 -0.9451 22 6 8.5577 3.8927 -1.7134 23 6 8.6789 4.3195 -3.0214 24 6 7.7338 5.1715 -3.5626 25 6 6.6616 5.5945 -2.7986 26 6 6.5319 5.1672 -1.4917 27 6 3.3702 1.2850 -0.7221 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.5623 2.4343 1.8155 32 1 2.4221 0.8879 2.1040 33 1 4.2324 2.4774 2.2362 34 1 3.5371 3.5006 0.9374 35 1 5.0495 3.2465 -0.9494 36 1 6.0621 1.7836 -1.0010 37 1 9.2502 4.5654 0.9410 38 1 8.4062 3.5909 2.1683 39 1 10.1045 6.2076 4.1249 40 1 9.2987 3.2311 -1.2898 41 1 9.5151 3.9909 -3.6207 42 1 7.8334 5.5077 -4.5842 43 1 5.9249 6.2597 -3.2243 44 1 5.6941 5.4975 -0.8956 45 1 3.3649 2.0008 -1.5442 46 1 3.5770 0.2846 -1.1023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267624076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:15 Heat of formation + Delta-G solvation = -29.193089 kcal Electronic energy + Delta-G solvation = -27225.688431 eV Core-core repulsion = 23502.076892 eV Total energy + Delta-G solvation = -3723.611538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.18751 -39.20544 -38.09235 -36.60617 -34.79589 -32.74833 -31.58227 -30.70659 -29.42666 -28.81019 -27.78892 -26.48751 -25.58794 -22.97691 -22.47538 -22.09845 -21.17903 -20.84470 -19.03006 -17.27318 -16.88274 -16.54773 -16.24284 -16.02356 -15.44281 -15.22538 -15.00625 -14.66721 -14.42972 -14.31770 -14.10185 -13.88712 -13.39212 -13.18464 -12.84113 -12.53286 -12.39345 -12.27707 -12.14402 -11.96805 -11.66532 -11.48930 -11.37672 -11.22624 -11.18389 -10.96703 -10.86679 -10.67818 -10.62187 -10.17626 -9.77654 -9.71962 -9.15237 -8.73867 -8.57860 -8.45299 -8.25754 -7.69049 -6.07271 -4.11642 1.52967 1.60709 3.25173 3.29530 3.35438 3.37835 3.49362 3.68671 3.98781 4.16693 4.42361 4.58815 4.68461 4.92187 4.96961 5.12501 5.13851 5.15147 5.18006 5.27898 5.31896 5.32739 5.36622 5.42367 5.57028 5.57278 5.64906 5.66876 5.78520 5.79973 5.83060 6.01008 6.16010 6.22348 6.41143 6.56280 6.69202 6.78296 6.88985 6.94623 7.04876 7.11345 7.17430 7.35162 7.47171 7.87962 8.17043 8.33359 8.84018 8.98702 9.52742 11.01117 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010485 B = 0.004284 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2669.835278 B = 6535.046119 C = 8287.942362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.079 3.921 4 H 0.066 0.934 5 C -0.145 4.145 6 C 0.033 3.967 7 N -0.494 5.494 8 C 0.027 3.973 9 C 0.513 3.487 10 O -0.509 6.509 11 N -0.564 5.564 12 C 0.250 3.750 13 C -0.524 4.524 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.275 1.275 21 C 0.164 3.836 22 C -0.124 4.124 23 C -0.110 4.110 24 C -0.134 4.134 25 C -0.111 4.111 26 C -0.124 4.124 27 C 0.037 3.963 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.035 0.965 38 H 0.047 0.953 39 H 0.264 0.736 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.052 0.948 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.511 -5.867 -14.124 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.021 3.979 4 H 0.084 0.916 5 C -0.184 4.184 6 C -0.094 4.094 7 N -0.219 5.219 8 C -0.104 4.104 9 C 0.300 3.700 10 O -0.383 6.383 11 N -0.293 5.293 12 C 0.133 3.867 13 C -0.563 4.563 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.200 1.200 21 C 0.072 3.928 22 C -0.143 4.143 23 C -0.128 4.128 24 C -0.152 4.152 25 C -0.130 4.130 26 C -0.143 4.143 27 C -0.091 4.091 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.134 0.866 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.070 0.930 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.072 -6.640 -13.067 18.989 hybrid contribution -0.744 2.071 0.017 2.201 sum -12.816 -4.569 -13.050 18.853 Atomic orbital electron populations 1.22767 0.81423 1.02616 0.99804 1.87975 1.19280 1.27417 1.94943 1.23022 0.94293 0.84479 0.96141 0.91581 1.23055 0.97309 1.01188 0.96802 1.23440 0.93099 0.93837 0.98988 1.64656 1.08121 1.38351 1.10816 1.22320 0.94538 0.97365 0.96185 1.20152 0.81038 0.79183 0.89620 1.90642 1.68175 1.59660 1.19852 1.45976 1.32246 1.44027 1.07063 1.19413 0.86801 0.95311 0.85202 1.21335 1.06264 1.08771 1.19890 0.92519 1.24903 0.94838 0.97830 0.96378 1.69926 1.13625 1.40098 1.29626 0.86500 0.78536 0.82768 0.79646 1.20494 1.21091 1.19961 1.17741 0.95089 0.95068 0.84947 1.21357 0.98460 1.00667 0.93863 1.20980 0.98929 0.98012 0.94909 1.21061 0.95222 0.99102 0.99808 1.20966 0.98300 0.99902 0.93833 1.21363 1.00385 0.96920 0.95670 1.22967 0.89837 1.02465 0.93821 0.89724 0.94088 0.94246 0.91144 0.89516 0.86620 0.94238 0.92105 0.88125 0.94748 0.93480 0.92656 0.85704 0.86053 0.86379 0.86213 0.86164 0.93028 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.85 101.05 1.10 1.35 16 2 O -0.38 -4.56 10.30 -35.23 -0.36 -4.92 16 3 C 0.08 0.92 3.48 -25.37 -0.09 0.84 16 4 H 0.07 0.65 7.81 -51.93 -0.41 0.24 16 5 C -0.15 -1.87 6.80 -24.87 -0.17 -2.04 16 6 C 0.03 0.53 5.37 -1.89 -0.01 0.52 16 7 N -0.49 -7.84 5.22 -231.88 -1.21 -9.05 16 8 C 0.03 0.44 4.46 -4.97 -0.02 0.42 16 9 C 0.51 10.69 7.15 -10.99 -0.08 10.61 16 10 O -0.51 -12.47 13.46 5.55 0.07 -12.39 16 11 N -0.56 -12.06 2.50 -114.73 -0.29 -12.35 16 12 C 0.25 6.53 5.08 -5.19 -0.03 6.50 16 13 C -0.52 -14.80 9.39 -34.44 -0.32 -15.12 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.49 13.29 55.43 0.74 -25.76 16 17 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.16 2.93 4.36 -83.69 -0.37 2.57 16 22 C -0.12 -1.95 9.76 -39.39 -0.38 -2.33 16 23 C -0.11 -1.41 10.04 -39.61 -0.40 -1.81 16 24 C -0.13 -1.61 10.04 -39.55 -0.40 -2.00 16 25 C -0.11 -1.45 10.04 -39.61 -0.40 -1.84 16 26 C -0.12 -1.97 8.35 -39.39 -0.33 -2.30 16 27 C 0.04 0.47 6.51 -2.75 -0.02 0.45 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 33 H 0.12 2.23 6.11 -51.93 -0.32 1.91 16 34 H 0.04 0.62 8.02 -51.93 -0.42 0.20 16 35 H 0.06 0.89 6.25 -51.93 -0.32 0.57 16 36 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.03 0.92 7.91 -51.93 -0.41 0.51 16 38 H 0.05 1.37 7.50 -51.93 -0.39 0.98 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 44 H 0.12 1.95 8.05 -52.49 -0.42 1.53 16 45 H 0.05 0.57 7.57 -51.93 -0.39 0.18 16 46 H 0.09 1.16 7.97 -51.93 -0.41 0.75 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -32.71 377.04 -9.66 -42.37 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.26 Total: 2.06 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.01 Total: -2.51 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.76 Total: -47.16 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.29 Total: -17.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.71 -9.66 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267624076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.173 kcal (2) G-P(sol) polarization free energy of solvation -32.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds