Wall clock time and date at job start Tue Mar 31 2020 12:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99947 * 2 1 4 4 C 1.53005 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.52998 * 112.84848 * 293.74445 * 4 3 2 6 6 N 1.46498 * 109.47431 * 294.17988 * 5 4 3 7 7 C 1.34774 * 120.00207 * 183.67902 * 6 5 4 8 8 O 1.21576 * 120.00276 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99827 * 179.97438 * 7 6 5 10 10 C 1.39240 * 119.99510 * 174.93204 * 9 7 6 11 11 C 1.39491 * 119.83340 * 216.88828 * 10 9 7 12 12 C 1.36368 * 120.16898 * 179.76275 * 11 10 9 13 13 C 1.40874 * 119.82978 * 0.51422 * 12 11 10 14 14 C 1.41155 * 120.16578 * 179.71861 * 13 12 11 15 15 H 1.07995 * 119.99922 * 158.67025 * 14 13 12 16 16 C 1.39900 * 119.99755 * 338.67217 * 14 13 12 17 17 N 1.30878 * 119.99964 * 333.87487 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 153.88082 * 16 14 13 19 19 H 1.48500 * 109.46989 * 94.96689 * 18 16 14 20 20 H 1.48492 * 109.47266 * 214.97259 * 18 16 14 21 21 H 1.48506 * 109.46764 * 334.97269 * 18 16 14 22 22 C 1.40865 * 119.67038 * 359.74201 * 13 12 11 23 23 C 1.36373 * 119.83113 * 359.97438 * 22 13 12 24 24 C 1.53772 * 113.61500 * 64.94232 * 4 3 2 25 25 C 1.53953 * 87.02175 * 89.23033 * 24 4 3 26 26 C 1.53783 * 113.61424 * 162.55294 * 4 3 2 27 27 H 1.08992 * 109.47183 * 60.00125 * 1 2 3 28 28 H 1.09004 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47388 * 59.99890 * 3 2 1 31 31 H 1.09005 * 109.47150 * 299.99927 * 3 2 1 32 32 H 1.09002 * 109.47049 * 54.17655 * 5 4 3 33 33 H 1.08995 * 109.47432 * 174.17730 * 5 4 3 34 34 H 0.97006 * 120.00108 * 3.67772 * 6 5 4 35 35 H 0.96997 * 120.00475 * 354.93696 * 9 7 6 36 36 H 1.08002 * 119.90967 * 0.02596 * 11 10 9 37 37 H 1.08003 * 120.08566 * 180.25067 * 12 11 10 38 38 H 0.97004 * 119.99748 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08615 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.92209 * 179.97438 * 23 22 13 41 41 H 1.09006 * 113.61683 * 203.75069 * 24 4 3 42 42 H 1.09002 * 113.61521 * 334.65110 * 24 4 3 43 43 H 1.09004 * 113.53775 * 270.80959 * 25 24 4 44 44 H 1.08998 * 113.74744 * 139.94224 * 25 24 4 45 45 H 1.08999 * 113.61484 * 25.34234 * 26 4 3 46 46 H 1.08993 * 113.61509 * 156.16985 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0834 0.5716 1.2896 6 7 3.8230 1.4785 2.4103 7 6 4.2846 1.1793 3.6406 8 8 4.9169 0.1566 3.8206 9 7 4.0454 2.0140 4.6715 10 6 4.4297 1.6556 5.9610 11 6 3.6226 1.9979 7.0460 12 6 3.9899 1.6461 8.3112 13 6 5.1933 0.9447 8.5221 14 6 5.5833 0.5822 9.8294 15 1 6.2870 -0.2232 9.9792 16 6 5.0581 1.2663 10.9310 17 7 4.6448 2.5010 10.7983 18 14 4.9470 0.4175 12.5913 19 1 6.1454 0.7548 13.4008 20 1 3.7255 0.8755 13.3006 21 1 4.8819 -1.0527 12.3922 22 6 6.0057 0.6072 7.4219 23 6 5.6223 0.9607 6.1618 24 6 4.1019 0.5414 -1.2773 25 6 4.1630 1.9613 -1.8693 26 6 4.2555 2.4762 -0.4232 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.5933 -0.3843 1.4744 33 1 5.1576 0.4159 1.1903 34 1 3.3182 2.2943 2.2668 35 1 3.6055 2.8642 4.5152 36 1 2.7023 2.5392 6.8830 37 1 3.3620 1.9083 9.1499 38 1 4.2810 2.9754 11.5622 39 1 6.9298 0.0699 7.5759 40 1 6.2442 0.7031 5.3173 41 1 5.0815 0.0839 -1.1382 42 1 3.3956 -0.1147 -1.7860 43 1 3.2479 2.2592 -2.3812 44 1 5.0593 2.1528 -2.4591 45 1 3.6729 3.3797 -0.2433 46 1 5.2765 2.5493 -0.0489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282622793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:31 Heat of formation + Delta-G solvation = -34.735740 kcal Electronic energy + Delta-G solvation = -26089.431350 eV Core-core repulsion = 22365.579464 eV Total energy + Delta-G solvation = -3723.851886 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.47494 -39.43822 -37.42350 -37.23766 -34.53220 -34.01003 -32.87244 -29.71759 -29.41315 -28.69947 -27.16338 -26.20838 -25.50620 -24.62322 -22.57841 -21.48053 -20.73634 -20.04048 -18.84859 -17.94208 -17.23126 -16.87516 -16.47114 -16.07840 -15.97760 -15.22534 -14.98597 -14.85026 -14.67047 -14.31481 -13.90297 -13.60474 -13.44687 -12.88205 -12.85866 -12.64749 -12.57529 -12.12218 -12.02276 -11.85298 -11.82838 -11.54791 -11.32181 -11.08917 -10.89600 -10.77988 -10.60449 -10.47059 -10.46270 -10.12030 -9.90739 -9.64428 -9.50486 -9.12158 -8.78757 -8.59720 -7.46425 -6.99222 -6.78494 -4.21150 2.72557 3.06487 3.08480 3.12215 3.17559 3.24728 3.42876 3.80620 3.94743 4.21639 4.29424 4.44541 4.60610 4.62325 4.73393 4.79250 4.94570 5.06478 5.12707 5.20951 5.23270 5.41099 5.45704 5.50355 5.60309 5.69286 5.75959 5.76614 5.91915 6.06999 6.12224 6.26170 6.51670 6.70564 6.86267 6.86915 6.94699 7.08555 7.18829 7.36654 7.42737 7.67431 7.96570 8.04765 8.11635 8.34647 8.59536 8.64516 8.92746 8.99301 9.22583 10.13985 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.002301 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.395030 B =12163.866046 C =12551.781715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.383 6.383 3 C 0.086 3.914 4 C -0.096 4.096 5 C 0.160 3.840 6 N -0.750 5.750 7 C 0.695 3.305 8 O -0.580 6.580 9 N -0.667 5.667 10 C 0.004 3.996 11 C -0.109 4.109 12 C -0.164 4.164 13 C 0.108 3.892 14 C -0.461 4.461 15 H 0.079 0.921 16 C 0.081 3.919 17 N -0.782 5.782 18 Si 0.901 3.099 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.222 4.222 23 C -0.070 4.070 24 C -0.119 4.119 25 C -0.143 4.143 26 C -0.126 4.126 27 H 0.039 0.961 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.388 0.612 35 H 0.389 0.611 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.281 0.719 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.167 2.833 -21.312 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.010 3.990 4 C -0.096 4.096 5 C 0.036 3.964 6 N -0.407 5.407 7 C 0.395 3.605 8 O -0.457 6.457 9 N -0.313 5.313 10 C -0.089 4.089 11 C -0.130 4.130 12 C -0.184 4.184 13 C 0.105 3.895 14 C -0.490 4.490 15 H 0.097 0.903 16 C -0.138 4.138 17 N -0.407 5.407 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.242 4.242 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.163 4.163 27 H 0.057 0.943 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.221 0.779 35 H 0.222 0.778 36 H 0.106 0.894 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.565 1.898 -21.026 22.108 hybrid contribution -0.887 0.849 0.689 1.408 sum -7.452 2.746 -20.337 21.832 Atomic orbital electron populations 1.22738 0.80981 1.02905 0.99828 1.87895 1.19541 1.27378 1.95323 1.22217 0.91686 0.85064 1.00078 1.22103 0.93511 0.98406 0.95599 1.21004 1.00135 0.92779 0.82504 1.45057 1.61231 1.26786 1.07644 1.16013 0.80647 0.83598 0.80222 1.90901 1.44833 1.26883 1.83061 1.42058 1.63351 1.20036 1.05898 1.16910 0.97964 1.12890 0.81100 1.20175 0.97303 1.02618 0.92883 1.20745 0.98052 1.04954 0.94676 1.17621 0.90202 0.89090 0.92602 1.19524 1.23453 1.15747 0.90298 0.90261 1.25928 0.92722 0.93762 1.01377 1.69909 1.29246 1.08429 1.33092 0.86428 0.78566 0.81378 0.81167 1.19566 1.20007 1.18258 1.20623 1.00747 1.10361 0.92452 1.20370 0.94084 0.98024 0.96543 1.22867 1.01572 0.96561 0.94742 1.22892 1.02086 0.96744 0.96339 1.22945 1.01180 0.95989 0.96204 0.94277 0.89527 0.93999 0.93048 0.93032 0.91248 0.91529 0.77879 0.77832 0.89426 0.86759 0.90841 0.88830 0.87668 0.89524 0.90585 0.90341 0.91174 0.91311 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.00 10.21 -35.23 -0.36 -4.36 16 3 C 0.09 0.74 5.09 37.16 0.19 0.93 16 4 C -0.10 -0.84 0.62 -153.70 -0.10 -0.94 16 5 C 0.16 1.98 4.94 -4.04 -0.02 1.96 16 6 N -0.75 -9.94 5.26 -65.23 -0.34 -10.28 16 7 C 0.69 12.90 8.39 -86.92 -0.73 12.17 16 8 O -0.58 -13.40 13.86 5.30 0.07 -13.33 16 9 N -0.67 -12.33 5.30 -14.10 -0.07 -12.41 16 10 C 0.00 0.09 6.28 -83.56 -0.52 -0.43 16 11 C -0.11 -2.57 9.90 -39.79 -0.39 -2.97 16 12 C -0.16 -4.31 8.69 -39.26 -0.34 -4.66 16 13 C 0.11 2.96 5.59 -106.80 -0.60 2.36 16 14 C -0.46 -12.49 8.99 -37.85 -0.34 -12.83 16 15 H 0.08 2.08 7.97 -52.49 -0.42 1.66 16 16 C 0.08 2.06 4.96 -17.34 -0.09 1.97 16 17 N -0.78 -20.13 11.28 55.55 0.63 -19.51 16 18 Si 0.90 18.69 29.63 -169.99 -5.04 13.65 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C -0.22 -5.83 9.74 -39.26 -0.38 -6.22 16 23 C -0.07 -1.76 8.60 -39.79 -0.34 -2.10 16 24 C -0.12 -0.96 7.16 -25.83 -0.19 -1.14 16 25 C -0.14 -0.94 7.74 -25.83 -0.20 -1.14 16 26 C -0.13 -0.92 7.04 -25.92 -0.18 -1.10 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.43 7.33 -51.93 -0.38 0.05 16 31 H 0.05 0.36 7.32 -51.93 -0.38 -0.02 16 32 H 0.07 1.02 7.95 -51.93 -0.41 0.61 16 33 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.39 3.95 7.72 -40.82 -0.32 3.64 16 35 H 0.39 5.67 8.84 -40.82 -0.36 5.31 16 36 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 37 H 0.11 3.04 6.24 -52.48 -0.33 2.72 16 38 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 39 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.11 2.64 6.34 -52.49 -0.33 2.31 16 41 H 0.09 0.69 8.04 -51.93 -0.42 0.28 16 42 H 0.08 0.63 7.96 -51.93 -0.41 0.22 16 43 H 0.08 0.46 7.62 -51.93 -0.40 0.07 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 46 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 376.17 15.07 5.67 5.67 Total: -1.00 -31.97 376.17 -9.65 -41.62 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -7.08 Total: 11.72 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -3.12 Total: -12.77 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.21 Total: -42.20 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.29 Total: -17.69 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.04 Total: 13.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.97 -9.65 -41.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282622793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.881 kcal (2) G-P(sol) polarization free energy of solvation -31.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds