Wall clock time and date at job start Tue Mar 31 2020 12:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 113.99947 * 2 1 4 4 C 1.53005 * 109.47224 * 180.02562 * 3 2 1 5 5 C 1.52998 * 112.84848 * 293.74445 * 4 3 2 6 6 N 1.46498 * 109.47431 * 294.17988 * 5 4 3 7 7 C 1.34774 * 120.00207 * 183.67902 * 6 5 4 8 8 O 1.21576 * 120.00276 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99827 * 179.97438 * 7 6 5 10 10 C 1.39240 * 119.99510 * 174.93204 * 9 7 6 11 11 C 1.39491 * 119.83340 * 216.88828 * 10 9 7 12 12 C 1.36368 * 120.16898 * 179.76275 * 11 10 9 13 13 C 1.40874 * 119.82978 * 0.51422 * 12 11 10 14 14 C 1.41155 * 120.16578 * 179.71861 * 13 12 11 15 15 H 1.07995 * 119.99922 * 158.67025 * 14 13 12 16 16 C 1.39900 * 119.99755 * 338.67217 * 14 13 12 17 17 N 1.30878 * 119.99964 * 333.87487 * 16 14 13 18 18 Si 1.86800 * 120.00017 * 153.88082 * 16 14 13 19 19 H 1.48500 * 109.46989 * 94.96689 * 18 16 14 20 20 H 1.48492 * 109.47266 * 214.97259 * 18 16 14 21 21 H 1.48506 * 109.46764 * 334.97269 * 18 16 14 22 22 C 1.40865 * 119.67038 * 359.74201 * 13 12 11 23 23 C 1.36373 * 119.83113 * 359.97438 * 22 13 12 24 24 C 1.53772 * 113.61500 * 64.94232 * 4 3 2 25 25 C 1.53953 * 87.02175 * 89.23033 * 24 4 3 26 26 C 1.53783 * 113.61424 * 162.55294 * 4 3 2 27 27 H 1.08992 * 109.47183 * 60.00125 * 1 2 3 28 28 H 1.09004 * 109.47285 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46965 * 300.00096 * 1 2 3 30 30 H 1.08998 * 109.47388 * 59.99890 * 3 2 1 31 31 H 1.09005 * 109.47150 * 299.99927 * 3 2 1 32 32 H 1.09002 * 109.47049 * 54.17655 * 5 4 3 33 33 H 1.08995 * 109.47432 * 174.17730 * 5 4 3 34 34 H 0.97006 * 120.00108 * 3.67772 * 6 5 4 35 35 H 0.96997 * 120.00475 * 354.93696 * 9 7 6 36 36 H 1.08002 * 119.90967 * 0.02596 * 11 10 9 37 37 H 1.08003 * 120.08566 * 180.25067 * 12 11 10 38 38 H 0.97004 * 119.99748 * 180.02562 * 17 16 14 39 39 H 1.08002 * 120.08615 * 179.97438 * 22 13 12 40 40 H 1.07999 * 119.92209 * 179.97438 * 23 22 13 41 41 H 1.09006 * 113.61683 * 203.75069 * 24 4 3 42 42 H 1.09002 * 113.61521 * 334.65110 * 24 4 3 43 43 H 1.09004 * 113.53775 * 270.80959 * 25 24 4 44 44 H 1.08998 * 113.74744 * 139.94224 * 25 24 4 45 45 H 1.08999 * 113.61484 * 25.34234 * 26 4 3 46 46 H 1.08993 * 113.61509 * 156.16985 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.0834 0.5716 1.2896 6 7 3.8230 1.4785 2.4103 7 6 4.2846 1.1793 3.6406 8 8 4.9169 0.1566 3.8206 9 7 4.0454 2.0140 4.6715 10 6 4.4297 1.6556 5.9610 11 6 3.6226 1.9979 7.0460 12 6 3.9899 1.6461 8.3112 13 6 5.1933 0.9447 8.5221 14 6 5.5833 0.5822 9.8294 15 1 6.2870 -0.2232 9.9792 16 6 5.0581 1.2663 10.9310 17 7 4.6448 2.5010 10.7983 18 14 4.9470 0.4175 12.5913 19 1 6.1454 0.7548 13.4008 20 1 3.7255 0.8755 13.3006 21 1 4.8819 -1.0527 12.3922 22 6 6.0057 0.6072 7.4219 23 6 5.6223 0.9607 6.1618 24 6 4.1019 0.5414 -1.2773 25 6 4.1630 1.9613 -1.8693 26 6 4.2555 2.4762 -0.4232 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.5933 -0.3843 1.4744 33 1 5.1576 0.4159 1.1903 34 1 3.3182 2.2943 2.2668 35 1 3.6055 2.8642 4.5152 36 1 2.7023 2.5392 6.8830 37 1 3.3620 1.9083 9.1499 38 1 4.2810 2.9754 11.5622 39 1 6.9298 0.0699 7.5759 40 1 6.2442 0.7031 5.3173 41 1 5.0815 0.0839 -1.1382 42 1 3.3956 -0.1147 -1.7860 43 1 3.2479 2.2592 -2.3812 44 1 5.0593 2.1528 -2.4591 45 1 3.6729 3.3797 -0.2433 46 1 5.2765 2.5493 -0.0489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282622793.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:30 Heat of formation + Delta-G solvation = -54.889320 kcal Electronic energy + Delta-G solvation = -26090.305275 eV Core-core repulsion = 22365.579464 eV Total energy + Delta-G solvation = -3724.725811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.56332 -40.66442 -39.13251 -38.03014 -36.23894 -35.42605 -34.66299 -31.46960 -30.99821 -29.97444 -28.11985 -26.85677 -26.62928 -25.96590 -23.67915 -23.05398 -22.48663 -21.66300 -19.78274 -19.30708 -19.03783 -18.27748 -17.31575 -17.06241 -16.84164 -16.80800 -16.34536 -16.07257 -15.71574 -15.65295 -15.22590 -15.00464 -14.62585 -14.49431 -14.24893 -13.94590 -13.72551 -13.46425 -13.30861 -13.18865 -12.79334 -12.75261 -12.67064 -12.54402 -12.33818 -12.14617 -11.91693 -11.54445 -11.46532 -11.31155 -11.18063 -11.13805 -10.94527 -10.57274 -10.48445 -10.03909 -9.45119 -8.89709 -8.67200 -6.22071 0.88082 1.16598 1.39189 1.46729 1.56300 1.79485 2.20738 2.24124 2.72064 2.75503 3.38807 3.57363 3.63761 3.75315 3.84552 3.99035 4.02029 4.39903 4.40634 4.46502 4.49915 4.53738 4.58596 4.59927 4.77067 4.83945 4.87359 4.89182 4.92614 4.95513 5.11414 5.12714 5.17315 5.19165 5.31139 5.33655 5.47214 5.51289 5.54125 5.66245 5.81121 6.05382 6.13978 6.23827 6.26980 6.39684 6.65678 6.92766 7.02273 7.19719 7.70426 8.27418 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027089 B = 0.002301 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.395030 B =12163.866046 C =12551.781715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.084 3.916 4 C -0.094 4.094 5 C 0.162 3.838 6 N -0.724 5.724 7 C 0.692 3.308 8 O -0.628 6.628 9 N -0.658 5.658 10 C 0.017 3.983 11 C -0.105 4.105 12 C -0.183 4.183 13 C 0.078 3.922 14 C -0.501 4.501 15 H 0.073 0.927 16 C 0.044 3.956 17 N -0.808 5.808 18 Si 0.977 3.023 19 H -0.261 1.261 20 H -0.261 1.261 21 H -0.263 1.263 22 C -0.243 4.243 23 C -0.081 4.081 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.121 4.121 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.055 0.945 34 H 0.408 0.592 35 H 0.412 0.588 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.292 0.708 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 4.378 -22.444 24.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.008 3.992 4 C -0.094 4.094 5 C 0.038 3.962 6 N -0.380 5.380 7 C 0.393 3.607 8 O -0.508 6.508 9 N -0.306 5.306 10 C -0.077 4.077 11 C -0.125 4.125 12 C -0.202 4.202 13 C 0.076 3.924 14 C -0.529 4.529 15 H 0.091 0.909 16 C -0.173 4.173 17 N -0.433 5.433 18 Si 0.797 3.203 19 H -0.185 1.185 20 H -0.185 1.185 21 H -0.187 1.187 22 C -0.263 4.263 23 C -0.101 4.101 24 C -0.162 4.162 25 C -0.169 4.169 26 C -0.159 4.159 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.249 0.751 36 H 0.141 0.859 37 H 0.125 0.875 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.105 0.895 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.269 3.507 -22.223 23.970 hybrid contribution -0.384 0.380 0.884 1.036 sum -8.653 3.887 -21.339 23.353 Atomic orbital electron populations 1.22870 0.79775 1.03485 1.00752 1.87864 1.21022 1.28634 1.95534 1.22322 0.90950 0.84658 1.01283 1.22141 0.94204 0.99520 0.93549 1.21040 0.99408 0.92002 0.83733 1.44808 1.59900 1.27376 1.05944 1.16201 0.80255 0.82910 0.81363 1.90879 1.46953 1.28980 1.84019 1.41809 1.63351 1.21150 1.04291 1.16936 0.96762 1.10947 0.83055 1.20433 0.98305 1.01955 0.91844 1.20780 0.97850 1.05931 0.95685 1.17941 0.91137 0.90155 0.93196 1.19732 1.25128 1.16679 0.91358 0.90931 1.26733 0.91710 0.94061 1.04812 1.69913 1.29137 1.09385 1.34857 0.85286 0.79279 0.79611 0.76115 1.18516 1.18476 1.18690 1.20740 1.01048 1.11374 0.93117 1.20455 0.95139 0.98713 0.95834 1.22898 1.01136 0.97662 0.94458 1.22859 1.03162 0.94882 0.95967 1.22929 1.00719 0.95686 0.96519 0.92421 0.89290 0.93924 0.92754 0.90784 0.93838 0.92707 0.75523 0.75138 0.85877 0.87542 0.89689 0.89112 0.88098 0.90079 0.90958 0.88956 0.90409 0.89525 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.41 -8.03 10.21 -148.98 -1.52 -9.55 16 3 C 0.08 1.23 5.09 71.98 0.37 1.60 16 4 C -0.09 -1.49 0.62 -51.66 -0.03 -1.52 16 5 C 0.16 3.96 4.94 86.38 0.43 4.38 16 6 N -0.72 -18.14 5.26 -478.56 -2.52 -20.66 16 7 C 0.69 25.21 8.39 179.05 1.50 26.71 16 8 O -0.63 -29.47 13.86 -3.96 -0.05 -29.53 16 9 N -0.66 -23.26 5.30 -316.78 -1.68 -24.94 16 10 C 0.02 0.78 6.28 38.57 0.24 1.02 16 11 C -0.11 -4.85 9.90 22.14 0.22 -4.63 16 12 C -0.18 -9.70 8.69 22.48 0.20 -9.51 16 13 C 0.08 4.45 5.59 -21.27 -0.12 4.33 16 14 C -0.50 -28.01 8.99 23.39 0.21 -27.80 16 15 H 0.07 3.99 7.97 -2.91 -0.02 3.96 16 16 C 0.04 2.25 4.96 85.24 0.42 2.67 16 17 N -0.81 -41.76 11.28 21.82 0.25 -41.52 16 18 Si 0.98 38.34 29.63 68.60 2.03 40.38 16 19 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 22 C -0.24 -13.32 9.74 22.48 0.22 -13.10 16 23 C -0.08 -4.17 8.60 22.13 0.19 -3.98 16 24 C -0.12 -1.81 7.16 31.18 0.22 -1.58 16 25 C -0.13 -1.34 7.74 31.18 0.24 -1.10 16 26 C -0.12 -1.43 7.04 31.12 0.22 -1.21 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.75 7.33 -2.39 -0.02 0.73 16 31 H 0.07 0.77 7.32 -2.38 -0.02 0.75 16 32 H 0.04 1.30 7.95 -2.39 -0.02 1.28 16 33 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 34 H 0.41 7.17 7.72 -92.70 -0.72 6.46 16 35 H 0.41 10.81 8.84 -92.71 -0.82 9.99 16 36 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 37 H 0.11 5.75 6.24 -2.91 -0.02 5.73 16 38 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 39 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.10 5.22 6.34 -2.91 -0.02 5.21 16 41 H 0.08 1.26 8.04 -2.38 -0.02 1.24 16 42 H 0.07 1.12 7.96 -2.39 -0.02 1.10 16 43 H 0.09 0.73 7.62 -2.38 -0.02 0.71 16 44 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.09 0.75 8.10 -2.39 -0.02 0.73 16 46 H 0.08 1.16 8.10 -2.39 -0.02 1.14 16 Total: -1.00 -71.73 376.17 1.74 -69.98 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.54 Total: 37.94 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.78 Total: -22.10 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -3.95 Total: -87.12 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.58 Total: -39.08 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.38 kcal Total: -71.73 1.74 -69.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282622793.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.094 kcal (2) G-P(sol) polarization free energy of solvation -71.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds