Wall clock time and date at job start Tue Mar 31 2020 12:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00372 * 2 1 4 4 C 1.38753 * 120.05579 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94309 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05524 * 359.75043 * 5 4 3 7 7 C 1.38236 * 120.11191 * 0.50733 * 6 5 4 8 8 C 1.50699 * 119.97310 * 179.76576 * 7 6 5 9 9 C 1.53047 * 109.45776 * 59.72481 * 8 7 6 10 10 C 1.53194 * 109.31080 * 178.61771 * 9 8 7 11 11 N 1.46919 * 108.77751 * 54.63205 * 10 9 8 12 12 C 1.37349 * 120.62932 * 126.37085 * 11 10 9 13 13 O 1.35089 * 120.00075 * 173.81883 * 12 11 10 14 14 N 1.30094 * 120.00038 * 353.81251 * 12 11 10 15 15 C 1.46495 * 120.00289 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47093 * 115.00081 * 15 14 12 17 17 H 1.08005 * 119.99953 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99909 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46980 * 89.99718 * 20 18 16 22 22 H 1.48498 * 109.47297 * 210.00006 * 20 18 16 23 23 H 1.48506 * 109.47002 * 330.00347 * 20 18 16 24 24 C 1.46924 * 118.74265 * 306.64363 * 11 10 9 25 25 C 1.52766 * 109.00456 * 53.30579 * 24 11 10 26 26 C 1.38163 * 120.05739 * 359.49162 * 7 6 5 27 27 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46922 * 300.00192 * 1 2 3 29 29 H 1.09005 * 109.46630 * 59.99582 * 1 2 3 30 30 H 1.07998 * 120.02775 * 359.96029 * 4 3 2 31 31 H 1.08002 * 119.96673 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.93947 * 180.27719 * 6 5 4 33 33 H 1.08999 * 109.46666 * 179.69174 * 8 7 6 34 34 H 1.08997 * 109.49549 * 58.66400 * 9 8 7 35 35 H 1.09004 * 109.49674 * 298.56360 * 9 8 7 36 36 H 1.09008 * 109.58584 * 294.84053 * 10 9 8 37 37 H 1.08998 * 109.70481 * 174.49610 * 10 9 8 38 38 H 0.96708 * 114.00127 * 354.60344 * 13 12 11 39 39 H 1.09000 * 109.47655 * 235.00190 * 15 14 12 40 40 H 1.09000 * 109.46814 * 355.00206 * 15 14 12 41 41 H 0.97000 * 120.00705 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.59142 * 173.14493 * 24 11 10 43 43 H 1.09001 * 109.58628 * 293.57391 * 24 11 10 44 44 H 1.08999 * 109.56078 * 185.55244 * 25 24 11 45 45 H 1.09000 * 109.38057 * 65.52117 * 25 24 11 46 46 H 1.08004 * 120.03181 * 180.23180 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0063 7 6 4.0561 2.5169 0.0004 8 6 5.5609 2.5979 0.0008 9 6 6.0310 3.3454 1.2508 10 6 7.5620 3.3956 1.2653 11 7 8.0280 3.9813 0.0011 12 6 8.8821 5.0570 0.0009 13 8 9.4012 5.5071 -1.1621 14 7 9.1909 5.6424 1.1209 15 6 10.1014 6.7901 1.1208 16 6 9.3599 8.0196 1.5784 17 1 8.3149 7.9527 1.8433 18 6 10.0154 9.2299 1.6590 19 7 11.2876 9.3115 1.3360 20 14 9.0964 10.7539 2.2269 21 1 9.2073 10.8775 3.7026 22 1 9.6857 11.9557 1.5838 23 1 7.6656 10.6398 1.8459 24 6 7.5583 3.3983 -1.2632 25 6 6.0317 3.3446 -1.2493 26 6 3.4312 1.2847 -0.0001 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2130 2.3204 0.0003 31 1 1.3342 4.5113 0.0019 32 1 3.7925 4.6378 0.0112 33 1 5.9789 1.5912 0.0012 34 1 5.6755 2.8258 2.1406 35 1 5.6338 4.3605 1.2386 36 1 7.9598 2.3860 1.3690 37 1 7.9017 4.0094 2.0996 38 1 9.1807 4.9607 -1.9289 39 1 10.9330 6.5943 1.7978 40 1 10.4836 6.9504 0.1127 41 1 11.7487 10.1630 1.3922 42 1 7.8934 4.0153 -2.0969 43 1 7.9557 2.3890 -1.3700 44 1 5.6767 2.8245 -2.1391 45 1 5.6341 4.3594 -1.2383 46 1 4.0207 0.3797 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331121645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:16 Heat of formation + Delta-G solvation = -28.144477 kcal Electronic energy + Delta-G solvation = -26194.309850 eV Core-core repulsion = 22470.743782 eV Total energy + Delta-G solvation = -3723.566067 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56821 -39.53381 -38.19222 -36.70139 -33.91275 -33.37400 -31.95608 -31.00780 -30.87754 -29.57694 -27.65803 -26.89841 -24.84114 -23.28517 -22.87621 -22.53032 -21.42102 -20.13233 -19.40508 -18.36922 -17.71242 -16.48666 -16.11782 -16.09629 -16.05411 -15.48382 -14.95811 -14.75574 -14.39562 -14.25407 -14.02927 -13.74998 -13.67856 -13.50371 -12.97121 -12.85694 -12.70991 -12.55279 -12.22566 -12.09894 -11.91044 -11.62793 -11.49050 -11.42185 -11.21731 -10.88173 -10.81667 -10.69205 -10.65068 -10.41145 -9.95151 -9.65045 -9.05153 -9.00826 -8.50291 -8.41284 -7.96432 -7.04790 -5.86551 -3.88766 1.09421 1.24296 2.94640 3.20736 3.39471 3.43876 3.48479 3.53184 3.69708 4.43366 4.47323 4.53736 4.57262 4.67509 4.75145 4.76585 4.81021 4.84024 5.04883 5.08720 5.14387 5.16277 5.24581 5.33884 5.38164 5.46343 5.49735 5.57402 5.69206 5.77046 5.84040 5.90041 6.02540 6.05935 6.17979 6.22590 6.33410 6.37504 6.50031 6.56389 7.01474 7.12023 7.43926 7.71062 7.76559 8.08588 8.49914 8.65470 9.12044 9.41169 9.76375 11.22201 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.002575 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.219202 B =10872.685099 C =11826.078974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.215 4.215 5 C -0.078 4.078 6 C -0.147 4.147 7 C -0.032 4.032 8 C -0.046 4.046 9 C -0.127 4.127 10 C 0.141 3.859 11 N -0.631 5.631 12 C 0.518 3.482 13 O -0.503 6.503 14 N -0.573 5.573 15 C 0.200 3.800 16 C -0.498 4.498 17 H 0.057 0.943 18 C 0.052 3.948 19 N -0.900 5.900 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.121 3.879 25 C -0.125 4.125 26 C -0.150 4.150 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.106 0.894 38 H 0.373 0.627 39 H 0.030 0.970 40 H 0.011 0.989 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.613 -20.399 -6.808 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.165 4.165 7 C -0.032 4.032 8 C -0.065 4.065 9 C -0.165 4.165 10 C 0.018 3.982 11 N -0.364 5.364 12 C 0.205 3.795 13 O -0.297 6.297 14 N -0.318 5.318 15 C 0.073 3.927 16 C -0.537 4.537 17 H 0.075 0.925 18 C -0.148 4.148 19 N -0.540 5.540 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.003 4.003 25 C -0.164 4.164 26 C -0.168 4.168 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.124 0.876 38 H 0.226 0.774 39 H 0.048 0.952 40 H 0.029 0.971 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.206 -19.978 -5.737 28.988 hybrid contribution -0.748 0.960 -0.916 1.523 sum -20.953 -19.018 -6.653 29.068 Atomic orbital electron populations 1.23035 0.78499 1.03827 1.01330 1.86060 1.21296 1.27123 1.88863 1.18998 0.92309 0.84043 0.96708 1.21198 0.99840 0.92492 1.09858 1.20948 0.94679 0.96938 0.97094 1.21008 0.93561 0.98525 1.03455 1.19688 0.95497 0.91999 0.96035 1.20176 0.89903 1.00316 0.96058 1.22042 0.96682 1.01144 0.96649 1.21348 0.92081 0.97832 0.86895 1.46291 1.51065 1.33127 1.05967 1.20731 0.88797 0.87061 0.82938 1.85430 1.72869 1.53890 1.17466 1.72458 1.25359 1.16902 1.17062 1.19332 0.90903 0.85817 0.96636 1.21195 0.96895 0.92245 1.43406 0.92479 1.24994 0.94991 0.98894 0.95931 1.69971 1.09205 1.25479 1.49338 0.86507 0.79823 0.82370 0.78735 1.20665 1.21323 1.20043 1.21307 0.94114 0.98286 0.86568 1.21913 0.95541 1.01490 0.97412 1.20312 0.91172 0.98157 1.07170 0.88320 0.92680 0.92727 0.85788 0.85831 0.85628 0.90146 0.90906 0.90921 0.92917 0.87570 0.77367 0.95249 0.97102 0.93085 0.90852 0.91741 0.90828 0.90945 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.03 10.50 -19.41 -0.20 -3.24 16 3 C 0.12 1.26 6.69 -39.21 -0.26 0.99 16 4 C -0.22 -1.96 9.04 -39.43 -0.36 -2.32 16 5 C -0.08 -0.74 10.04 -39.60 -0.40 -1.13 16 6 C -0.15 -1.51 8.74 -39.56 -0.35 -1.86 16 7 C -0.03 -0.32 4.78 -104.65 -0.50 -0.82 16 8 C -0.05 -0.44 2.32 -91.73 -0.21 -0.65 16 9 C -0.13 -1.44 5.15 -26.61 -0.14 -1.58 16 10 C 0.14 1.92 6.46 -3.71 -0.02 1.90 16 11 N -0.63 -9.33 3.05 -175.63 -0.54 -9.86 16 12 C 0.52 10.49 8.53 -88.56 -0.76 9.74 16 13 O -0.50 -9.81 11.97 -16.97 -0.20 -10.01 16 14 N -0.57 -14.26 9.11 -63.71 -0.58 -14.84 16 15 C 0.20 5.89 6.09 -5.19 -0.03 5.86 16 16 C -0.50 -15.41 9.39 -34.44 -0.32 -15.73 16 17 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -28.37 13.29 55.43 0.74 -27.63 16 20 Si 0.90 22.90 29.54 -169.99 -5.02 17.88 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.12 1.24 6.28 -3.93 -0.02 1.21 16 25 C -0.12 -1.17 5.14 -26.83 -0.14 -1.31 16 26 C -0.15 -1.51 9.61 -39.43 -0.38 -1.88 16 27 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.12 0.86 6.30 -52.49 -0.33 0.53 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.13 1.30 7.13 -52.49 -0.37 0.93 16 33 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.96 7.42 -51.93 -0.39 0.57 16 36 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.11 1.78 6.91 -51.93 -0.36 1.42 16 38 H 0.37 4.83 6.27 45.56 0.29 5.12 16 39 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.01 0.34 6.74 -51.93 -0.35 -0.01 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 0.65 5.77 -51.93 -0.30 0.35 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.79 7.46 -51.93 -0.39 0.40 16 46 H 0.13 1.16 7.94 -52.48 -0.42 0.74 16 LS Contribution 370.46 15.07 5.58 5.58 Total: -1.00 -36.92 370.46 -9.54 -46.46 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.33 Total: 0.61 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.99 Total: -4.95 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.38 Total: -52.33 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.41 Total: -13.25 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.02 Total: 17.88 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.92 -9.54 -46.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331121645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.316 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds