Wall clock time and date at job start Tue Mar 31 2020 12:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00372 * 2 1 4 4 C 1.38753 * 120.05579 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94309 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05524 * 359.75043 * 5 4 3 7 7 C 1.38236 * 120.11191 * 0.50733 * 6 5 4 8 8 C 1.50699 * 119.97310 * 179.76576 * 7 6 5 9 9 C 1.53047 * 109.45776 * 59.72481 * 8 7 6 10 10 C 1.53194 * 109.31080 * 178.61771 * 9 8 7 11 11 N 1.46919 * 108.77751 * 54.63205 * 10 9 8 12 12 C 1.37349 * 120.62932 * 126.37085 * 11 10 9 13 13 O 1.35089 * 120.00075 * 173.81883 * 12 11 10 14 14 N 1.30094 * 120.00038 * 353.81251 * 12 11 10 15 15 C 1.46495 * 120.00289 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47093 * 115.00081 * 15 14 12 17 17 H 1.08005 * 119.99953 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99909 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00356 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00069 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46980 * 89.99718 * 20 18 16 22 22 H 1.48498 * 109.47297 * 210.00006 * 20 18 16 23 23 H 1.48506 * 109.47002 * 330.00347 * 20 18 16 24 24 C 1.46924 * 118.74265 * 306.64363 * 11 10 9 25 25 C 1.52766 * 109.00456 * 53.30579 * 24 11 10 26 26 C 1.38163 * 120.05739 * 359.49162 * 7 6 5 27 27 H 1.08997 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46922 * 300.00192 * 1 2 3 29 29 H 1.09005 * 109.46630 * 59.99582 * 1 2 3 30 30 H 1.07998 * 120.02775 * 359.96029 * 4 3 2 31 31 H 1.08002 * 119.96673 * 180.02562 * 5 4 3 32 32 H 1.07998 * 119.93947 * 180.27719 * 6 5 4 33 33 H 1.08999 * 109.46666 * 179.69174 * 8 7 6 34 34 H 1.08997 * 109.49549 * 58.66400 * 9 8 7 35 35 H 1.09004 * 109.49674 * 298.56360 * 9 8 7 36 36 H 1.09008 * 109.58584 * 294.84053 * 10 9 8 37 37 H 1.08998 * 109.70481 * 174.49610 * 10 9 8 38 38 H 0.96708 * 114.00127 * 354.60344 * 13 12 11 39 39 H 1.09000 * 109.47655 * 235.00190 * 15 14 12 40 40 H 1.09000 * 109.46814 * 355.00206 * 15 14 12 41 41 H 0.97000 * 120.00705 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.59142 * 173.14493 * 24 11 10 43 43 H 1.09001 * 109.58628 * 293.57391 * 24 11 10 44 44 H 1.08999 * 109.56078 * 185.55244 * 25 24 11 45 45 H 1.09000 * 109.38057 * 65.52117 * 25 24 11 46 46 H 1.08004 * 120.03181 * 180.23180 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2916 2.3753 0.0005 5 6 1.9211 3.6047 0.0011 6 6 3.3022 3.6756 0.0063 7 6 4.0561 2.5169 0.0004 8 6 5.5609 2.5979 0.0008 9 6 6.0310 3.3454 1.2508 10 6 7.5620 3.3956 1.2653 11 7 8.0280 3.9813 0.0011 12 6 8.8821 5.0570 0.0009 13 8 9.4012 5.5071 -1.1621 14 7 9.1909 5.6424 1.1209 15 6 10.1014 6.7901 1.1208 16 6 9.3599 8.0196 1.5784 17 1 8.3149 7.9527 1.8433 18 6 10.0154 9.2299 1.6590 19 7 11.2876 9.3115 1.3360 20 14 9.0964 10.7539 2.2269 21 1 9.2073 10.8775 3.7026 22 1 9.6857 11.9557 1.5838 23 1 7.6656 10.6398 1.8459 24 6 7.5583 3.3983 -1.2632 25 6 6.0317 3.3446 -1.2493 26 6 3.4312 1.2847 -0.0001 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 0.2130 2.3204 0.0003 31 1 1.3342 4.5113 0.0019 32 1 3.7925 4.6378 0.0112 33 1 5.9789 1.5912 0.0012 34 1 5.6755 2.8258 2.1406 35 1 5.6338 4.3605 1.2386 36 1 7.9598 2.3860 1.3690 37 1 7.9017 4.0094 2.0996 38 1 9.1807 4.9607 -1.9289 39 1 10.9330 6.5943 1.7978 40 1 10.4836 6.9504 0.1127 41 1 11.7487 10.1630 1.3922 42 1 7.8934 4.0153 -2.0969 43 1 7.9557 2.3890 -1.3700 44 1 5.6767 2.8245 -2.1391 45 1 5.6341 4.3594 -1.2383 46 1 4.0207 0.3797 -0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331121645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:15 Heat of formation + Delta-G solvation = -55.134238 kcal Electronic energy + Delta-G solvation = -26195.480213 eV Core-core repulsion = 22470.743782 eV Total energy + Delta-G solvation = -3724.736431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.34063 -40.68869 -39.20444 -37.72584 -35.82244 -34.73687 -33.74045 -31.96846 -31.73610 -30.52184 -28.88263 -28.13324 -26.10132 -24.54452 -24.01876 -23.56031 -22.50371 -21.34320 -20.73349 -19.47476 -18.55032 -18.43793 -17.13953 -17.10528 -16.82452 -16.61440 -16.31910 -15.97872 -15.69289 -15.31601 -15.21709 -14.73463 -14.65480 -14.44957 -14.39484 -14.27434 -13.83211 -13.67030 -13.55278 -13.20800 -13.03993 -12.86409 -12.72127 -12.64343 -12.25492 -12.16624 -12.13329 -12.03072 -11.74490 -11.58897 -11.52195 -11.30895 -10.78265 -10.56789 -10.01047 -9.73204 -9.12328 -8.70400 -8.13582 -6.31623 0.37867 0.51086 1.35838 1.40218 1.50850 1.88793 2.03562 2.38658 2.42817 2.80361 3.08608 3.24181 3.66477 3.76001 3.90510 3.98931 4.13563 4.20953 4.25427 4.33304 4.39412 4.40244 4.44705 4.48732 4.54342 4.59254 4.67547 4.74615 4.80612 4.89858 5.00413 5.03303 5.08788 5.15264 5.20969 5.28975 5.35479 5.38668 5.44739 5.55067 5.69684 5.73801 5.81902 5.85034 6.09761 6.23162 6.48249 6.77565 7.21358 7.31185 7.69583 8.91008 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.002575 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.219202 B =10872.685099 C =11826.078974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.217 4.217 5 C -0.085 4.085 6 C -0.163 4.163 7 C -0.035 4.035 8 C -0.038 4.038 9 C -0.117 4.117 10 C 0.137 3.863 11 N -0.620 5.620 12 C 0.539 3.461 13 O -0.521 6.521 14 N -0.623 5.623 15 C 0.220 3.780 16 C -0.525 4.525 17 H 0.048 0.952 18 C -0.002 4.002 19 N -0.934 5.934 20 Si 0.976 3.024 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.268 1.268 24 C 0.113 3.887 25 C -0.119 4.119 26 C -0.159 4.159 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.401 0.599 39 H -0.009 1.009 40 H -0.019 1.019 41 H 0.266 0.734 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.099 0.901 45 H 0.053 0.947 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.000 -21.693 -7.858 32.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.181 4.181 7 C -0.035 4.035 8 C -0.057 4.057 9 C -0.155 4.155 10 C 0.015 3.985 11 N -0.353 5.353 12 C 0.226 3.774 13 O -0.318 6.318 14 N -0.371 5.371 15 C 0.092 3.908 16 C -0.564 4.564 17 H 0.067 0.933 18 C -0.200 4.200 19 N -0.574 5.574 20 Si 0.799 3.201 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.193 1.193 24 C -0.009 4.009 25 C -0.158 4.158 26 C -0.177 4.177 27 H 0.136 0.864 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.135 0.865 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.259 0.741 39 H 0.009 0.991 40 H -0.001 1.001 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.072 0.928 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -22.638 -21.345 -6.841 31.857 hybrid contribution -0.111 1.174 -0.716 1.380 sum -22.749 -20.171 -7.557 31.329 Atomic orbital electron populations 1.23311 0.76639 1.05458 1.02106 1.86039 1.23303 1.26928 1.88768 1.19196 0.92642 0.84619 0.96647 1.21440 1.00963 0.92032 1.09102 1.21177 0.94554 0.97841 0.96740 1.21076 0.94220 0.98406 1.04383 1.19660 0.95513 0.91943 0.96363 1.20126 0.89853 1.00875 0.94828 1.21920 0.94727 1.00364 0.98520 1.21447 0.93656 0.98154 0.85270 1.46604 1.49167 1.31028 1.08456 1.20888 0.87530 0.86672 0.82322 1.85371 1.72870 1.55097 1.18469 1.72369 1.27644 1.17463 1.19603 1.18818 0.90738 0.87659 0.93612 1.21463 0.96708 0.93721 1.44482 0.93347 1.26022 0.95962 1.02538 0.95470 1.70103 1.10868 1.26762 1.49675 0.85301 0.78473 0.77595 0.78689 1.19397 1.19958 1.19271 1.21746 0.94793 0.99828 0.84493 1.21874 0.94590 1.00847 0.98441 1.20477 0.91580 0.98410 1.07241 0.86412 0.91979 0.91810 0.83795 0.84400 0.86519 0.88154 0.89827 0.93304 0.90122 0.91231 0.74111 0.99079 1.00099 0.92539 0.89367 0.88501 0.88291 0.92769 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.72 10.50 -92.38 -0.97 -6.69 16 3 C 0.11 2.09 6.69 22.51 0.15 2.24 16 4 C -0.22 -3.54 9.04 22.37 0.20 -3.34 16 5 C -0.09 -1.48 10.04 22.25 0.22 -1.26 16 6 C -0.16 -3.20 8.74 22.28 0.19 -3.00 16 7 C -0.03 -0.63 4.78 -19.88 -0.09 -0.73 16 8 C -0.04 -0.64 2.32 -11.51 -0.03 -0.67 16 9 C -0.12 -2.57 5.15 30.67 0.16 -2.41 16 10 C 0.14 3.65 6.46 86.36 0.56 4.21 16 11 N -0.62 -17.69 3.05 -820.03 -2.50 -20.19 16 12 C 0.54 22.15 8.53 179.63 1.53 23.69 16 13 O -0.52 -20.36 11.97 -83.64 -1.00 -21.37 16 14 N -0.62 -32.54 9.11 -469.74 -4.28 -36.82 16 15 C 0.22 13.75 6.09 85.63 0.52 14.27 16 16 C -0.53 -33.83 9.39 25.60 0.24 -33.59 16 17 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 18 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 19 N -0.93 -60.46 13.29 21.45 0.28 -60.18 16 20 Si 0.98 47.65 29.54 68.60 2.03 49.67 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 24 C 0.11 1.96 6.28 86.22 0.54 2.50 16 25 C -0.12 -1.92 5.14 30.53 0.16 -1.77 16 26 C -0.16 -2.87 9.61 22.37 0.21 -2.66 16 27 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.46 7.66 -2.39 -0.02 0.44 16 29 H 0.06 0.44 7.66 -2.38 -0.02 0.42 16 30 H 0.14 1.66 6.30 -2.91 -0.02 1.64 16 31 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.12 2.44 7.13 -2.91 -0.02 2.42 16 33 H 0.10 1.34 7.87 -2.39 -0.02 1.32 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.31 7.42 -2.39 -0.02 1.29 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.07 2.42 6.91 -2.39 -0.02 2.41 16 38 H 0.40 9.73 6.27 -74.05 -0.46 9.27 16 39 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H -0.02 -1.25 6.74 -2.39 -0.02 -1.27 16 41 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 42 H 0.09 1.28 5.77 -2.39 -0.01 1.26 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.10 7.46 -2.39 -0.02 1.08 16 46 H 0.14 2.14 7.94 -2.91 -0.02 2.12 16 Total: -1.00 -84.44 370.46 0.23 -84.21 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.52 Total: 12.28 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.15 Total: -0.92 kcal Atomic # 7 Polarization: -110.69 SS G_CDS: -6.50 Total: -117.18 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -1.97 Total: -28.06 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -84.44 0.23 -84.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331121645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.073 kcal (2) G-P(sol) polarization free energy of solvation -84.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds