Wall clock time and date at job start Tue Mar 31 2020 12:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99710 * 2 1 4 4 H 1.08998 * 110.05629 * 28.57902 * 3 2 1 5 5 C 1.54267 * 110.02856 * 267.16417 * 3 2 1 6 6 C 1.55034 * 104.27643 * 217.19907 * 5 3 2 7 7 C 1.54882 * 102.68645 * 37.76946 * 6 5 3 8 8 C 1.53873 * 110.03133 * 150.00038 * 3 2 1 9 9 H 1.08999 * 110.03414 * 238.56642 * 8 3 2 10 10 C 1.52996 * 110.03293 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.47277 * 183.62278 * 10 8 3 12 12 C 1.34777 * 120.00276 * 180.02562 * 11 10 8 13 13 O 1.21582 * 120.00035 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00226 * 179.97438 * 12 11 10 15 15 C 1.39238 * 120.00103 * 175.70822 * 14 12 11 16 16 C 1.39483 * 119.83815 * 215.02555 * 15 14 12 17 17 C 1.36365 * 120.17279 * 179.76257 * 16 15 14 18 18 C 1.40872 * 119.82902 * 0.49153 * 17 16 15 19 19 C 1.41149 * 120.16558 * 179.78572 * 18 17 16 20 20 H 1.08005 * 120.00189 * 214.76315 * 19 18 17 21 21 C 1.39892 * 120.00332 * 34.76510 * 19 18 17 22 22 N 1.30885 * 119.99721 * 355.55729 * 21 19 18 23 23 Si 1.86800 * 120.00430 * 175.55978 * 21 19 18 24 24 H 1.48503 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47331 * 119.99708 * 23 21 19 26 26 H 1.48500 * 109.47364 * 240.00074 * 23 21 19 27 27 C 1.40871 * 119.67113 * 359.76260 * 18 17 16 28 28 C 1.36379 * 119.82477 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47326 * 300.00297 * 1 2 3 31 31 H 1.08996 * 109.47382 * 60.00076 * 1 2 3 32 32 H 1.08995 * 110.48774 * 335.78210 * 5 3 2 33 33 H 1.09002 * 110.48609 * 98.30101 * 5 3 2 34 34 H 1.09006 * 110.69726 * 279.51392 * 6 5 3 35 35 H 1.09002 * 110.87365 * 156.10698 * 6 5 3 36 36 H 1.09002 * 110.48611 * 203.48568 * 7 6 5 37 37 H 1.08999 * 110.48986 * 80.96931 * 7 6 5 38 38 H 1.09001 * 109.47649 * 303.62109 * 10 8 3 39 39 H 1.09001 * 109.47234 * 63.62265 * 10 8 3 40 40 H 0.96997 * 119.99797 * 359.97438 * 11 10 8 41 41 H 0.97002 * 120.00149 * 355.71848 * 14 12 11 42 42 H 1.08008 * 119.91037 * 359.97438 * 16 15 14 43 43 H 1.08005 * 120.09138 * 180.27510 * 17 16 15 44 44 H 0.97005 * 119.99565 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.08708 * 180.02562 * 27 18 17 46 46 H 1.08000 * 119.90946 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3407 2.0127 0.4898 5 6 2.2905 1.7591 -1.4476 6 6 3.6276 2.5379 -1.3520 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2779 0.7228 9 1 3.3580 1.9717 1.5634 10 6 3.6709 -0.1385 1.2157 11 7 4.9232 -0.1339 1.9760 12 6 5.3916 -1.2793 2.5099 13 8 4.7752 -2.3165 2.3604 14 7 6.5440 -1.2752 3.2089 15 6 6.9822 -2.4386 3.8358 16 6 7.6502 -2.3592 5.0577 17 6 8.0781 -3.4946 5.6800 18 6 7.8530 -4.7494 5.0807 19 6 8.2968 -5.9289 5.7165 20 1 8.6510 -6.7606 5.1253 21 6 8.2779 -6.0208 7.1122 22 7 7.9315 -4.9838 7.8317 23 14 8.7472 -7.6235 7.9493 24 1 9.0959 -8.6358 6.9202 25 1 9.9165 -7.3951 8.8358 26 1 7.6018 -8.1139 8.7572 27 6 7.1823 -4.8213 3.8440 28 6 6.7556 -3.6774 3.2363 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.4006 0.8955 -2.1034 33 1 1.4920 2.4092 -1.8051 34 1 3.4572 3.5534 -0.9941 35 1 4.1412 2.5472 -2.3134 36 1 5.1880 2.3359 0.1623 37 1 4.8833 0.8449 -0.7812 38 1 2.8584 -0.4818 1.8562 39 1 3.7672 -0.8079 0.3609 40 1 5.4156 0.6933 2.0944 41 1 7.0681 -0.4616 3.2753 42 1 7.8260 -1.3960 5.5137 43 1 8.5913 -3.4318 6.6283 44 1 7.9188 -5.0474 8.7995 45 1 7.0058 -5.7798 3.3787 46 1 6.2409 -3.7310 2.2883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341778954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:23 Heat of formation + Delta-G solvation = -61.596857 kcal Electronic energy + Delta-G solvation = -25961.921557 eV Core-core repulsion = 22236.904885 eV Total energy + Delta-G solvation = -3725.016671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.07551 -39.34855 -37.37147 -36.37907 -34.50776 -34.04667 -32.78126 -30.16328 -29.44982 -28.62139 -28.46338 -26.40732 -25.23086 -24.05154 -21.58578 -21.20122 -20.74173 -20.23059 -19.77726 -17.88005 -17.28748 -17.17360 -16.34760 -16.02994 -15.46672 -15.16548 -15.08096 -14.80831 -14.40765 -14.13481 -14.02132 -13.77693 -13.44034 -12.99211 -12.64969 -12.60519 -12.33515 -12.01992 -11.76849 -11.65013 -11.59453 -11.41458 -11.28103 -11.12577 -11.06756 -10.94829 -10.86684 -10.78329 -10.65052 -9.98980 -9.82987 -9.43772 -9.36717 -9.14950 -8.81187 -8.70779 -7.44740 -6.73526 -6.53309 -4.25127 2.74657 3.11185 3.14516 3.16444 3.20761 3.25922 3.50224 3.83075 4.04819 4.18633 4.21087 4.52106 4.75170 4.79280 4.88437 4.94026 5.03720 5.07533 5.13618 5.20374 5.28991 5.32970 5.48379 5.53138 5.61678 5.68153 5.73753 5.78843 5.95956 6.04222 6.15525 6.27969 6.54579 6.73369 6.86743 6.95251 6.96504 7.14285 7.25195 7.37126 7.51611 7.74662 7.97055 8.07138 8.19170 8.40337 8.59534 8.73079 9.02003 9.03327 9.22418 10.38008 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.002203 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.256281 B =12707.369777 C =13162.340361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.092 3.908 4 H 0.066 0.934 5 C -0.147 4.147 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.103 4.103 9 H 0.084 0.916 10 C 0.161 3.839 11 N -0.754 5.754 12 C 0.694 3.306 13 O -0.576 6.576 14 N -0.670 5.670 15 C 0.027 3.973 16 C -0.125 4.125 17 C -0.140 4.140 18 C 0.096 3.904 19 C -0.461 4.461 20 H 0.075 0.925 21 C 0.068 3.932 22 N -0.815 5.815 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.203 4.203 28 C -0.087 4.087 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.389 0.611 41 H 0.390 0.610 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.276 0.724 45 H 0.095 0.905 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.404 17.413 -13.618 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C 0.033 3.967 4 H 0.084 0.916 5 C -0.185 4.185 6 C -0.160 4.160 7 C -0.158 4.158 8 C -0.122 4.122 9 H 0.102 0.898 10 C 0.037 3.963 11 N -0.411 5.411 12 C 0.395 3.605 13 O -0.453 6.453 14 N -0.316 5.316 15 C -0.066 4.066 16 C -0.146 4.146 17 C -0.160 4.160 18 C 0.094 3.906 19 C -0.493 4.493 20 H 0.093 0.907 21 C -0.146 4.146 22 N -0.443 5.443 23 Si 0.739 3.261 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.223 4.223 28 C -0.108 4.108 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.222 0.778 41 H 0.223 0.777 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.113 0.887 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.939 16.333 -13.513 23.412 hybrid contribution 0.228 0.458 0.638 0.817 sum -9.711 16.791 -12.875 23.281 Atomic orbital electron populations 1.22791 0.81234 1.02975 0.99632 1.88031 1.19458 1.26986 1.94858 1.22756 0.93889 0.84900 0.95159 0.91598 1.22929 0.97776 1.00588 0.97180 1.22435 0.95527 0.98570 0.99488 1.22469 0.97111 1.00185 0.96044 1.22157 0.94112 0.97728 0.98193 0.89784 1.20882 0.84935 0.94919 0.95597 1.45184 1.26972 1.09451 1.59529 1.16023 0.81214 0.83891 0.79417 1.90913 1.59833 1.30509 1.64051 1.42130 1.22153 1.13001 1.54304 1.17084 1.09741 0.84641 0.95106 1.20291 1.02981 0.97945 0.93333 1.21170 1.03035 0.90792 1.01051 1.17718 0.89042 0.93157 0.90724 1.19502 1.38205 1.00362 0.91196 0.90673 1.25862 0.93011 0.97919 0.97778 1.69784 1.37651 1.29797 1.07027 0.86167 0.78580 0.81932 0.79377 1.18642 1.20097 1.20075 1.20815 1.05547 0.96188 0.99783 1.20440 0.99679 0.91444 0.99199 0.89497 0.94084 0.94279 0.90264 0.91585 0.91421 0.91151 0.91274 0.90695 0.91366 0.91266 0.77827 0.77674 0.89220 0.85073 0.91354 0.88665 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.85 101.05 1.10 1.33 16 2 O -0.37 -3.95 8.47 -35.23 -0.30 -4.25 16 3 C 0.09 0.76 3.36 -25.61 -0.09 0.67 16 4 H 0.07 0.46 7.81 -51.93 -0.41 0.05 16 5 C -0.15 -1.04 6.56 -24.99 -0.16 -1.20 16 6 C -0.12 -0.77 6.92 -24.66 -0.17 -0.94 16 7 C -0.12 -0.90 6.01 -25.08 -0.15 -1.05 16 8 C -0.10 -0.89 2.98 -89.50 -0.27 -1.16 16 9 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 10 C 0.16 2.04 3.99 -4.04 -0.02 2.02 16 11 N -0.75 -10.06 5.39 -65.23 -0.35 -10.42 16 12 C 0.69 13.03 8.40 -86.92 -0.73 12.30 16 13 O -0.58 -13.57 13.76 5.29 0.07 -13.49 16 14 N -0.67 -12.33 5.31 -14.10 -0.07 -12.41 16 15 C 0.03 0.63 6.31 -83.57 -0.53 0.10 16 16 C -0.12 -2.94 9.90 -39.79 -0.39 -3.33 16 17 C -0.14 -3.71 8.61 -39.26 -0.34 -4.05 16 18 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 19 C -0.46 -12.66 9.02 -37.86 -0.34 -13.00 16 20 H 0.08 1.99 7.85 -52.48 -0.41 1.57 16 21 C 0.07 1.78 5.42 -17.34 -0.09 1.69 16 22 N -0.81 -21.75 10.59 55.54 0.59 -21.16 16 23 Si 0.91 19.53 29.56 -169.99 -5.03 14.50 16 24 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 27 C -0.20 -5.35 9.74 -39.26 -0.38 -5.73 16 28 C -0.09 -2.19 8.61 -39.79 -0.34 -2.54 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.28 8.10 -51.93 -0.42 -0.14 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.67 7.78 -51.93 -0.40 0.26 16 38 H 0.07 1.01 7.71 -51.93 -0.40 0.61 16 39 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 40 H 0.39 3.84 8.33 -40.82 -0.34 3.50 16 41 H 0.39 5.57 8.83 -40.82 -0.36 5.21 16 42 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 43 H 0.13 3.56 6.13 -52.48 -0.32 3.24 16 44 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 45 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 46 H 0.11 2.74 6.22 -52.49 -0.33 2.41 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -32.71 372.77 -10.13 -42.85 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -7.16 Total: 11.58 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.50 Total: -12.81 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.16 Total: -43.99 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.23 Total: -17.74 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.71 -10.13 -42.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341778954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.751 kcal (2) G-P(sol) polarization free energy of solvation -32.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds