Wall clock time and date at job start Tue Mar 31 2020 12:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 113.99710 * 2 1 4 4 H 1.08998 * 110.05629 * 28.57902 * 3 2 1 5 5 C 1.54267 * 110.02856 * 267.16417 * 3 2 1 6 6 C 1.55034 * 104.27643 * 217.19907 * 5 3 2 7 7 C 1.54882 * 102.68645 * 37.76946 * 6 5 3 8 8 C 1.53873 * 110.03133 * 150.00038 * 3 2 1 9 9 H 1.08999 * 110.03414 * 238.56642 * 8 3 2 10 10 C 1.52996 * 110.03293 * 359.97438 * 8 3 2 11 11 N 1.46501 * 109.47277 * 183.62278 * 10 8 3 12 12 C 1.34777 * 120.00276 * 180.02562 * 11 10 8 13 13 O 1.21582 * 120.00035 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00226 * 179.97438 * 12 11 10 15 15 C 1.39238 * 120.00103 * 175.70822 * 14 12 11 16 16 C 1.39483 * 119.83815 * 215.02555 * 15 14 12 17 17 C 1.36365 * 120.17279 * 179.76257 * 16 15 14 18 18 C 1.40872 * 119.82902 * 0.49153 * 17 16 15 19 19 C 1.41149 * 120.16558 * 179.78572 * 18 17 16 20 20 H 1.08005 * 120.00189 * 214.76315 * 19 18 17 21 21 C 1.39892 * 120.00332 * 34.76510 * 19 18 17 22 22 N 1.30885 * 119.99721 * 355.55729 * 21 19 18 23 23 Si 1.86800 * 120.00430 * 175.55978 * 21 19 18 24 24 H 1.48503 * 109.47112 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47331 * 119.99708 * 23 21 19 26 26 H 1.48500 * 109.47364 * 240.00074 * 23 21 19 27 27 C 1.40871 * 119.67113 * 359.76260 * 18 17 16 28 28 C 1.36379 * 119.82477 * 359.97438 * 27 18 17 29 29 H 1.09004 * 109.47442 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47326 * 300.00297 * 1 2 3 31 31 H 1.08996 * 109.47382 * 60.00076 * 1 2 3 32 32 H 1.08995 * 110.48774 * 335.78210 * 5 3 2 33 33 H 1.09002 * 110.48609 * 98.30101 * 5 3 2 34 34 H 1.09006 * 110.69726 * 279.51392 * 6 5 3 35 35 H 1.09002 * 110.87365 * 156.10698 * 6 5 3 36 36 H 1.09002 * 110.48611 * 203.48568 * 7 6 5 37 37 H 1.08999 * 110.48986 * 80.96931 * 7 6 5 38 38 H 1.09001 * 109.47649 * 303.62109 * 10 8 3 39 39 H 1.09001 * 109.47234 * 63.62265 * 10 8 3 40 40 H 0.96997 * 119.99797 * 359.97438 * 11 10 8 41 41 H 0.97002 * 120.00149 * 355.71848 * 14 12 11 42 42 H 1.08008 * 119.91037 * 359.97438 * 16 15 14 43 43 H 1.08005 * 120.09138 * 180.27510 * 17 16 15 44 44 H 0.97005 * 119.99565 * 180.02562 * 22 21 19 45 45 H 1.07994 * 120.08708 * 180.02562 * 27 18 17 46 46 H 1.08000 * 119.90946 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 1 1.3407 2.0127 0.4898 5 6 2.2905 1.7591 -1.4476 6 6 3.6276 2.5379 -1.3520 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2779 0.7228 9 1 3.3580 1.9717 1.5634 10 6 3.6709 -0.1385 1.2157 11 7 4.9232 -0.1339 1.9760 12 6 5.3916 -1.2793 2.5099 13 8 4.7752 -2.3165 2.3604 14 7 6.5440 -1.2752 3.2089 15 6 6.9822 -2.4386 3.8358 16 6 7.6502 -2.3592 5.0577 17 6 8.0781 -3.4946 5.6800 18 6 7.8530 -4.7494 5.0807 19 6 8.2968 -5.9289 5.7165 20 1 8.6510 -6.7606 5.1253 21 6 8.2779 -6.0208 7.1122 22 7 7.9315 -4.9838 7.8317 23 14 8.7472 -7.6235 7.9493 24 1 9.0959 -8.6358 6.9202 25 1 9.9165 -7.3951 8.8358 26 1 7.6018 -8.1139 8.7572 27 6 7.1823 -4.8213 3.8440 28 6 6.7556 -3.6774 3.2363 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 2.4006 0.8955 -2.1034 33 1 1.4920 2.4092 -1.8051 34 1 3.4572 3.5534 -0.9941 35 1 4.1412 2.5472 -2.3134 36 1 5.1880 2.3359 0.1623 37 1 4.8833 0.8449 -0.7812 38 1 2.8584 -0.4818 1.8562 39 1 3.7672 -0.8079 0.3609 40 1 5.4156 0.6933 2.0944 41 1 7.0681 -0.4616 3.2753 42 1 7.8260 -1.3960 5.5137 43 1 8.5913 -3.4318 6.6283 44 1 7.9188 -5.0474 8.7995 45 1 7.0058 -5.7798 3.3787 46 1 6.2409 -3.7310 2.2883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341778954.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:23 Heat of formation + Delta-G solvation = -82.428196 kcal Electronic energy + Delta-G solvation = -25962.824871 eV Core-core repulsion = 22236.904885 eV Total energy + Delta-G solvation = -3725.919986 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44912 -40.29029 -39.16327 -37.19109 -36.15897 -35.41280 -34.60620 -31.52668 -31.22122 -30.19635 -29.13623 -27.15257 -26.77344 -25.30616 -23.35568 -22.64748 -21.87900 -21.52662 -20.76901 -19.40532 -19.07891 -18.38543 -17.61583 -17.02052 -16.82772 -16.50248 -16.23103 -15.81910 -15.60465 -15.39485 -15.29040 -15.01494 -14.68006 -14.47398 -14.30982 -13.97572 -13.57899 -13.43030 -13.22714 -13.10763 -12.84327 -12.74708 -12.46949 -12.38386 -12.23959 -11.92648 -11.82384 -11.76866 -11.53415 -11.45630 -11.37131 -11.23081 -10.99497 -10.64309 -10.47694 -10.03050 -9.43998 -8.66271 -8.47754 -6.29951 0.86577 1.16681 1.40361 1.47816 1.55834 1.79292 2.23123 2.27062 2.83481 2.86984 3.36244 3.60079 3.66246 3.71635 3.85637 4.27542 4.34643 4.38486 4.41952 4.47316 4.50429 4.55174 4.55873 4.66084 4.76197 4.87498 4.89296 4.94310 5.00777 5.03823 5.16303 5.16816 5.19784 5.20952 5.27134 5.35793 5.45962 5.47197 5.56094 5.72077 5.85733 6.06295 6.14839 6.28551 6.35207 6.42558 6.70982 6.99474 7.03762 7.20727 7.69646 8.45223 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029490 B = 0.002203 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.256281 B =12707.369777 C =13162.340361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.086 3.914 4 H 0.084 0.916 5 C -0.145 4.145 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.095 4.095 9 H 0.105 0.895 10 C 0.167 3.833 11 N -0.727 5.727 12 C 0.690 3.310 13 O -0.627 6.627 14 N -0.659 5.659 15 C 0.043 3.957 16 C -0.120 4.120 17 C -0.157 4.157 18 C 0.064 3.936 19 C -0.497 4.497 20 H 0.071 0.929 21 C 0.026 3.974 22 N -0.843 5.843 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.262 1.262 26 H -0.270 1.270 27 C -0.220 4.220 28 C -0.099 4.099 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.411 0.589 41 H 0.415 0.585 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.284 0.716 45 H 0.094 0.906 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.509 20.017 -13.549 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C 0.027 3.973 4 H 0.102 0.898 5 C -0.183 4.183 6 C -0.154 4.154 7 C -0.158 4.158 8 C -0.114 4.114 9 H 0.123 0.877 10 C 0.043 3.957 11 N -0.384 5.384 12 C 0.391 3.609 13 O -0.507 6.507 14 N -0.307 5.307 15 C -0.052 4.052 16 C -0.140 4.140 17 C -0.177 4.177 18 C 0.062 3.938 19 C -0.528 4.528 20 H 0.089 0.911 21 C -0.185 4.185 22 N -0.471 5.471 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.186 1.186 26 H -0.195 1.195 27 C -0.240 4.240 28 C -0.120 4.120 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.248 0.752 41 H 0.252 0.748 42 H 0.144 0.856 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.033 19.040 -13.473 25.391 hybrid contribution 0.172 -0.230 0.512 0.587 sum -9.861 18.810 -12.962 24.881 Atomic orbital electron populations 1.22903 0.80101 1.03197 1.00823 1.87996 1.20946 1.28610 1.95095 1.22959 0.93770 0.84484 0.96058 0.89784 1.22914 0.98971 1.00341 0.96066 1.22433 0.94583 0.99013 0.99369 1.22470 0.97255 0.99967 0.96071 1.22184 0.95004 0.95010 0.99239 0.87703 1.20842 0.83517 0.97442 0.93943 1.44934 1.26924 1.08715 1.57814 1.16241 0.80936 0.84484 0.79248 1.90890 1.61200 1.32875 1.65774 1.41873 1.22493 1.12586 1.53736 1.17100 1.07848 0.85507 0.94699 1.20533 1.01800 0.98673 0.93018 1.21171 1.04011 0.91464 1.01092 1.18034 0.90154 0.94119 0.91488 1.19718 1.40101 1.00580 0.92444 0.91078 1.26738 0.92395 1.01608 0.97789 1.69840 1.37880 1.31675 1.07707 0.85051 0.78630 0.77167 0.78131 1.18496 1.18633 1.19495 1.20925 1.06239 0.96825 0.99995 1.20521 0.99937 0.92235 0.99280 0.89920 0.93186 0.92696 0.92007 0.89975 0.89597 0.90722 0.89353 0.92648 0.93680 0.93755 0.75188 0.74808 0.85575 0.86165 0.90540 0.88787 0.87788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.85 113.37 1.23 1.61 16 2 O -0.41 -8.49 8.47 -148.98 -1.26 -9.75 16 3 C 0.09 1.26 3.36 31.32 0.11 1.37 16 4 H 0.08 0.93 7.81 -2.39 -0.02 0.91 16 5 C -0.15 -1.76 6.56 31.72 0.21 -1.55 16 6 C -0.12 -1.12 6.92 31.93 0.22 -0.90 16 7 C -0.12 -1.49 6.01 31.67 0.19 -1.30 16 8 C -0.10 -1.44 2.98 -10.07 -0.03 -1.47 16 9 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 10 C 0.17 4.15 3.99 86.38 0.34 4.50 16 11 N -0.73 -18.20 5.39 -478.54 -2.58 -20.78 16 12 C 0.69 25.36 8.40 179.05 1.50 26.87 16 13 O -0.63 -30.01 13.76 -3.97 -0.05 -30.06 16 14 N -0.66 -23.08 5.31 -316.79 -1.68 -24.77 16 15 C 0.04 1.95 6.31 38.56 0.24 2.19 16 16 C -0.12 -5.52 9.90 22.13 0.22 -5.30 16 17 C -0.16 -8.43 8.61 22.48 0.19 -8.24 16 18 C 0.06 3.68 5.55 -21.28 -0.12 3.56 16 19 C -0.50 -28.19 9.02 23.39 0.21 -27.98 16 20 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 21 C 0.03 1.37 5.42 85.23 0.46 1.84 16 22 N -0.84 -45.51 10.59 21.82 0.23 -45.28 16 23 Si 0.99 40.25 29.56 68.60 2.03 42.27 16 24 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 25 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 26 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 27 C -0.22 -12.02 9.74 22.48 0.22 -11.80 16 28 C -0.10 -5.09 8.61 22.13 0.19 -4.90 16 29 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.05 0.92 7.78 -2.39 -0.02 0.90 16 38 H 0.04 1.35 7.71 -2.39 -0.02 1.33 16 39 H 0.04 1.34 7.90 -2.39 -0.02 1.32 16 40 H 0.41 6.80 8.33 -92.71 -0.77 6.03 16 41 H 0.41 10.51 8.83 -92.71 -0.82 9.69 16 42 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.12 6.66 6.13 -2.91 -0.02 6.64 16 44 H 0.28 13.87 8.30 -92.70 -0.77 13.10 16 45 H 0.09 4.97 8.06 -2.91 -0.02 4.94 16 46 H 0.10 5.40 6.22 -2.91 -0.02 5.39 16 Total: -1.00 -74.19 372.77 1.48 -72.71 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: -0.59 Total: 37.16 kcal Atomic # 6 Polarization: -26.90 SS G_CDS: 5.39 Total: -21.51 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -4.03 Total: -90.82 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.32 Total: -39.81 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.27 kcal Total: -74.19 1.48 -72.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341778954.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.717 kcal (2) G-P(sol) polarization free energy of solvation -74.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds