Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 117.00016 * 2 1 4 4 C 1.38751 * 120.05591 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94773 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05322 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11037 * 359.74925 * 6 5 4 8 8 C 1.38167 * 120.05280 * 0.50411 * 7 6 5 9 9 C 1.50700 * 120.02367 * 179.77145 * 8 7 6 10 10 H 1.08996 * 110.88236 * 182.14857 * 9 8 7 11 11 C 1.55158 * 111.00721 * 306.07399 * 9 8 7 12 12 C 1.54316 * 102.94139 * 153.57725 * 11 9 8 13 13 N 1.47020 * 107.27568 * 337.80546 * 12 11 9 14 14 C 1.34776 * 125.65281 * 178.97789 * 13 12 11 15 15 O 1.21587 * 120.00115 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99692 * 359.95917 * 14 13 12 17 17 C 1.46499 * 119.99773 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46973 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47231 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99327 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99975 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99603 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47387 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46773 * 120.00219 * 23 21 19 26 26 H 1.48501 * 109.47100 * 239.99703 * 23 21 19 27 27 C 1.47422 * 108.70191 * 358.94070 * 13 12 11 28 28 H 1.09003 * 109.47413 * 60.00046 * 1 2 3 29 29 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47006 * 299.99820 * 1 2 3 31 31 H 1.08002 * 120.02919 * 359.95693 * 4 3 2 32 32 H 1.08004 * 119.97823 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.94652 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97015 * 180.25061 * 7 6 5 35 35 H 1.09003 * 110.71801 * 271.94246 * 11 9 8 36 36 H 1.09003 * 110.71814 * 35.21152 * 11 9 8 37 37 H 1.09000 * 109.88340 * 97.22892 * 12 11 9 38 38 H 1.09005 * 109.88355 * 218.23652 * 12 11 9 39 39 H 0.96999 * 120.00014 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47142 * 299.99274 * 17 16 14 41 41 H 1.08996 * 109.47851 * 59.99739 * 17 16 14 42 42 H 1.08997 * 109.47479 * 299.99731 * 18 17 16 43 43 H 1.09004 * 109.46864 * 59.99921 * 18 17 16 44 44 H 0.97007 * 120.00359 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.36873 * 265.28987 * 27 13 12 46 46 H 1.09005 * 110.36491 * 142.96394 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0047 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0222 -0.0018 10 1 3.6133 -0.8588 -0.0448 11 6 5.2762 0.0251 -1.1688 12 6 6.4025 -0.8899 -0.6438 13 7 6.3026 -0.9077 0.8229 14 6 7.0972 -1.6083 1.6560 15 8 6.9226 -1.5471 2.8577 16 7 8.0853 -2.3772 1.1569 17 6 8.9488 -3.1393 2.0624 18 6 9.9792 -3.9220 1.2462 19 6 10.8679 -4.7055 2.1776 20 1 10.7128 -4.6509 3.2451 21 6 11.8781 -5.4928 1.6671 22 7 12.0665 -5.5596 0.3673 23 14 12.9791 -6.4644 2.8217 24 1 12.5624 -6.2197 4.2259 25 1 12.8611 -7.9129 2.5161 26 1 14.3887 -6.0337 2.6409 27 6 5.1897 -0.0314 1.2315 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3204 0.0003 32 1 1.3340 4.5114 0.0019 33 1 3.7922 4.6381 0.0005 34 1 5.1344 2.5752 0.0084 35 1 4.8310 -0.3910 -2.0726 36 1 5.6509 1.0324 -1.3507 37 1 6.2740 -1.8986 -1.0364 38 1 7.3723 -0.4952 -0.9468 39 1 8.2243 -2.4266 0.1982 40 1 9.4632 -2.4541 2.7364 41 1 8.3426 -3.8340 2.6437 42 1 9.4647 -4.6072 0.5725 43 1 10.5855 -3.2275 0.6646 44 1 12.7775 -6.1132 0.0080 45 1 5.5598 0.9655 1.4704 46 1 4.6657 -0.4577 2.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343986868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = -47.544934 kcal Electronic energy + Delta-G solvation = -25871.556839 eV Core-core repulsion = 22147.149505 eV Total energy + Delta-G solvation = -3724.407334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82120 -39.76893 -38.04917 -37.12405 -34.73830 -33.22089 -32.61885 -30.46649 -30.31952 -29.47665 -28.35857 -27.46230 -24.95725 -23.58660 -22.82452 -22.28268 -20.96986 -20.33571 -19.58776 -18.46908 -17.77922 -16.93891 -16.34759 -16.10284 -16.07133 -15.58145 -15.28239 -14.74994 -14.65414 -14.48641 -14.02754 -13.83076 -13.54425 -13.41120 -13.27143 -13.04546 -12.77205 -12.47326 -12.35262 -12.23801 -11.89600 -11.82882 -11.54560 -11.40138 -11.13815 -11.01822 -10.96749 -10.77879 -10.58348 -10.28192 -9.86268 -9.52109 -9.21276 -9.14684 -8.65762 -8.46273 -8.41023 -8.11048 -6.06153 -4.08405 0.96406 1.11782 2.91913 2.95522 3.30867 3.38324 3.39299 3.44139 3.63324 4.29108 4.33125 4.41112 4.47492 4.52860 4.71082 4.74703 4.78136 4.79230 4.86491 5.01685 5.07291 5.13353 5.19695 5.28292 5.31015 5.35165 5.55669 5.63782 5.71110 5.78306 5.87861 5.93696 6.00231 6.18212 6.23542 6.29027 6.44450 6.45140 6.49732 6.82194 7.04582 7.07143 7.37159 7.61191 7.67595 7.93467 8.29762 8.45395 8.96812 9.06101 9.56143 11.05604 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.002074 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.589939 B =13495.780242 C =13676.536900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.313 6.313 3 C 0.133 3.867 4 C -0.208 4.208 5 C -0.084 4.084 6 C -0.155 4.155 7 C -0.076 4.076 8 C -0.100 4.100 9 C -0.057 4.057 10 H 0.100 0.900 11 C -0.120 4.120 12 C 0.099 3.901 13 N -0.642 5.642 14 C 0.717 3.283 15 O -0.596 6.596 16 N -0.736 5.736 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.519 4.519 20 H 0.060 0.940 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.137 3.863 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.393 0.607 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.022 0.978 43 H 0.022 0.978 44 H 0.261 0.739 45 H 0.064 0.936 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.130 18.259 -7.164 31.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.226 6.226 3 C 0.088 3.912 4 C -0.227 4.227 5 C -0.102 4.102 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.101 4.101 9 C -0.076 4.076 10 H 0.118 0.882 11 C -0.158 4.158 12 C -0.025 4.025 13 N -0.382 5.382 14 C 0.419 3.581 15 O -0.474 6.474 16 N -0.390 5.390 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.557 4.557 20 H 0.079 0.921 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.014 3.986 28 H 0.073 0.927 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.968 17.933 -6.316 30.593 hybrid contribution 0.413 -0.395 -0.038 0.573 sum -23.555 17.537 -6.354 30.046 Atomic orbital electron populations 1.23068 0.78372 1.04101 1.01227 1.86095 1.21304 1.26703 1.88519 1.18828 0.91712 0.84315 0.96378 1.21211 0.99971 0.92361 1.09150 1.20937 0.94741 0.96911 0.97611 1.21059 0.93880 0.98440 1.03902 1.20924 1.00219 0.90981 0.97242 1.18946 0.90089 0.95065 1.05969 1.21166 0.95167 0.95996 0.95281 0.88196 1.22731 0.94740 1.00375 0.97916 1.21983 0.99254 1.00269 0.80973 1.47554 1.34827 1.49873 1.05964 1.15576 0.79439 0.78689 0.84426 1.90888 1.73887 1.69673 1.12981 1.45536 1.33642 1.48989 1.10784 1.21599 0.91100 0.93287 0.92308 1.19329 0.92652 0.94788 0.95695 1.21099 1.14484 1.26787 0.93364 0.92148 1.25000 0.97476 0.96753 0.95160 1.69966 1.32233 1.40001 1.11175 0.86456 0.80285 0.79660 0.81154 1.19565 1.20974 1.20969 1.22038 0.85981 0.93909 0.96684 0.92714 0.88130 0.92644 0.85529 0.85902 0.85807 0.85111 0.89838 0.90291 0.91451 0.91386 0.77388 0.92774 0.92785 0.95982 0.95987 0.92950 0.91817 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.95 9.32 -19.43 -0.18 -3.13 16 3 C 0.13 1.26 6.66 -39.22 -0.26 1.00 16 4 C -0.21 -1.63 9.04 -39.44 -0.36 -1.99 16 5 C -0.08 -0.60 10.04 -39.61 -0.40 -1.00 16 6 C -0.15 -1.16 10.04 -39.56 -0.40 -1.56 16 7 C -0.08 -0.64 8.28 -39.60 -0.33 -0.97 16 8 C -0.10 -0.96 5.01 -104.48 -0.52 -1.48 16 9 C -0.06 -0.58 3.21 -89.62 -0.29 -0.87 16 10 H 0.10 1.12 7.11 -51.93 -0.37 0.75 16 11 C -0.12 -1.04 6.35 -24.90 -0.16 -1.20 16 12 C 0.10 1.08 6.15 -3.07 -0.02 1.07 16 13 N -0.64 -9.50 3.33 -176.24 -0.59 -10.09 16 14 C 0.72 13.85 8.49 -86.92 -0.74 13.11 16 15 O -0.60 -13.82 16.60 5.29 0.09 -13.73 16 16 N -0.74 -14.09 5.52 -65.22 -0.36 -14.45 16 17 C 0.14 3.14 5.61 -4.04 -0.02 3.12 16 18 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 19 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 20 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 23 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.14 1.77 6.33 -2.53 -0.02 1.75 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.73 6.30 -52.49 -0.33 0.40 16 32 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.98 7.01 -52.49 -0.37 0.61 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.61 6.78 -51.93 -0.35 0.26 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 6.60 7.46 -40.82 -0.30 6.30 16 40 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.06 0.78 7.05 -51.93 -0.37 0.41 16 46 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -34.34 375.95 -9.80 -44.14 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.07 Total: 1.76 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -3.07 Total: -1.12 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: -0.21 Total: -50.23 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.09 Total: -16.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.34 -9.80 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343986868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.407 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds