Wall clock time and date at job start Tue Mar 31 2020 12:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35902 * 117.00016 * 2 1 4 4 C 1.38751 * 120.05591 * 0.02562 * 3 2 1 5 5 C 1.38119 * 119.94773 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05322 * 0.02562 * 5 4 3 7 7 C 1.38250 * 120.11037 * 359.74925 * 6 5 4 8 8 C 1.38167 * 120.05280 * 0.50411 * 7 6 5 9 9 C 1.50700 * 120.02367 * 179.77145 * 8 7 6 10 10 H 1.08996 * 110.88236 * 182.14857 * 9 8 7 11 11 C 1.55158 * 111.00721 * 306.07399 * 9 8 7 12 12 C 1.54316 * 102.94139 * 153.57725 * 11 9 8 13 13 N 1.47020 * 107.27568 * 337.80546 * 12 11 9 14 14 C 1.34776 * 125.65281 * 178.97789 * 13 12 11 15 15 O 1.21587 * 120.00115 * 179.97438 * 14 13 12 16 16 N 1.34780 * 119.99692 * 359.95917 * 14 13 12 17 17 C 1.46499 * 119.99773 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46973 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47231 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99327 * 0.02562 * 19 18 17 21 21 C 1.37875 * 119.99975 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00013 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99603 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47387 * 0.02562 * 23 21 19 25 25 H 1.48510 * 109.46773 * 120.00219 * 23 21 19 26 26 H 1.48501 * 109.47100 * 239.99703 * 23 21 19 27 27 C 1.47422 * 108.70191 * 358.94070 * 13 12 11 28 28 H 1.09003 * 109.47413 * 60.00046 * 1 2 3 29 29 H 1.09000 * 109.47025 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47006 * 299.99820 * 1 2 3 31 31 H 1.08002 * 120.02919 * 359.95693 * 4 3 2 32 32 H 1.08004 * 119.97823 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.94652 * 179.97438 * 6 5 4 34 34 H 1.07998 * 119.97015 * 180.25061 * 7 6 5 35 35 H 1.09003 * 110.71801 * 271.94246 * 11 9 8 36 36 H 1.09003 * 110.71814 * 35.21152 * 11 9 8 37 37 H 1.09000 * 109.88340 * 97.22892 * 12 11 9 38 38 H 1.09005 * 109.88355 * 218.23652 * 12 11 9 39 39 H 0.96999 * 120.00014 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.47142 * 299.99274 * 17 16 14 41 41 H 1.08996 * 109.47851 * 59.99739 * 17 16 14 42 42 H 1.08997 * 109.47479 * 299.99731 * 18 17 16 43 43 H 1.09004 * 109.46864 * 59.99921 * 18 17 16 44 44 H 0.97007 * 120.00359 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.36873 * 265.28987 * 27 13 12 46 46 H 1.09005 * 110.36491 * 142.96394 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0005 7 6 4.0560 2.5171 0.0047 8 6 3.4311 1.2848 -0.0011 9 6 4.2537 0.0222 -0.0018 10 1 3.6133 -0.8588 -0.0448 11 6 5.2762 0.0251 -1.1688 12 6 6.4025 -0.8899 -0.6438 13 7 6.3026 -0.9077 0.8229 14 6 7.0972 -1.6083 1.6560 15 8 6.9226 -1.5471 2.8577 16 7 8.0853 -2.3772 1.1569 17 6 8.9488 -3.1393 2.0624 18 6 9.9792 -3.9220 1.2462 19 6 10.8679 -4.7055 2.1776 20 1 10.7128 -4.6509 3.2451 21 6 11.8781 -5.4928 1.6671 22 7 12.0665 -5.5596 0.3673 23 14 12.9791 -6.4644 2.8217 24 1 12.5624 -6.2197 4.2259 25 1 12.8611 -7.9129 2.5161 26 1 14.3887 -6.0337 2.6409 27 6 5.1897 -0.0314 1.2315 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2128 2.3204 0.0003 32 1 1.3340 4.5114 0.0019 33 1 3.7922 4.6381 0.0005 34 1 5.1344 2.5752 0.0084 35 1 4.8310 -0.3910 -2.0726 36 1 5.6509 1.0324 -1.3507 37 1 6.2740 -1.8986 -1.0364 38 1 7.3723 -0.4952 -0.9468 39 1 8.2243 -2.4266 0.1982 40 1 9.4632 -2.4541 2.7364 41 1 8.3426 -3.8340 2.6437 42 1 9.4647 -4.6072 0.5725 43 1 10.5855 -3.2275 0.6646 44 1 12.7775 -6.1132 0.0080 45 1 5.5598 0.9655 1.4704 46 1 4.6657 -0.4577 2.0871 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343986868.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:02 Heat of formation + Delta-G solvation = -68.794574 kcal Electronic energy + Delta-G solvation = -25872.478292 eV Core-core repulsion = 22147.149505 eV Total energy + Delta-G solvation = -3725.328788 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63334 -40.93087 -38.99343 -37.96949 -36.57348 -34.88112 -33.95669 -31.62963 -31.02563 -30.88090 -29.32072 -28.01691 -26.76481 -24.79753 -23.64669 -22.92237 -22.84109 -21.16171 -21.00356 -19.24123 -18.95267 -18.46682 -17.71568 -16.98433 -16.88057 -16.61495 -16.52762 -16.36599 -15.86224 -15.35976 -15.26744 -15.03874 -14.64069 -14.38332 -14.34364 -14.15832 -13.93677 -13.70414 -13.54743 -13.21900 -12.94764 -12.89784 -12.56151 -12.51444 -12.49862 -12.32648 -12.25147 -11.96366 -11.67871 -11.60474 -11.55386 -11.49441 -11.21311 -10.60973 -10.19695 -9.76165 -9.51450 -9.05902 -8.23876 -6.34092 0.36175 0.52043 1.41498 1.41959 1.54804 1.61237 2.09403 2.41019 2.41628 2.78555 3.07371 3.10764 3.53638 3.68673 3.76713 3.96926 4.13477 4.20955 4.25879 4.33568 4.36014 4.40596 4.45756 4.49979 4.50385 4.57882 4.64593 4.72257 4.75545 4.81627 4.84762 4.89504 5.02395 5.10904 5.20283 5.27048 5.31664 5.42685 5.51255 5.57145 5.58330 5.64421 5.79126 5.89395 6.03423 6.17230 6.48131 6.78754 6.97213 7.35013 7.52357 8.88333 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029985 B = 0.002074 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.589939 B =13495.780242 C =13676.536900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.116 3.884 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.118 4.118 9 C -0.043 4.043 10 H 0.087 0.913 11 C -0.107 4.107 12 C 0.091 3.909 13 N -0.637 5.637 14 C 0.713 3.287 15 O -0.640 6.640 16 N -0.730 5.730 17 C 0.160 3.840 18 C 0.025 3.975 19 C -0.545 4.545 20 H 0.058 0.942 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.967 3.033 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.276 1.276 27 C 0.134 3.866 28 H 0.068 0.932 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.405 0.595 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.266 0.734 45 H 0.072 0.928 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.862 19.473 -7.996 32.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.250 6.250 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.178 4.178 7 C -0.100 4.100 8 C -0.119 4.119 9 C -0.063 4.063 10 H 0.105 0.895 11 C -0.145 4.145 12 C -0.031 4.031 13 N -0.375 5.375 14 C 0.414 3.586 15 O -0.523 6.523 16 N -0.385 5.385 17 C 0.036 3.964 18 C -0.012 4.012 19 C -0.584 4.584 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.565 5.565 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.201 1.201 27 C 0.012 3.988 28 H 0.086 0.914 29 H 0.129 0.871 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.156 0.844 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.241 0.759 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.737 19.176 -7.207 32.118 hybrid contribution 0.536 -0.707 0.182 0.906 sum -24.201 18.469 -7.025 31.243 Atomic orbital electron populations 1.23297 0.76707 1.05232 1.02220 1.86058 1.23194 1.27129 1.88668 1.19054 0.91958 0.84929 0.96941 1.21483 1.00991 0.92069 1.08601 1.21299 0.94964 0.97634 0.96370 1.21356 0.94246 0.98941 1.03225 1.21074 1.00755 0.90958 0.97240 1.18958 0.90359 0.94953 1.07626 1.20967 0.94724 0.96260 0.94302 0.89463 1.22733 0.93247 1.00803 0.97722 1.22288 1.00989 1.01473 0.78389 1.47563 1.33947 1.48576 1.07429 1.15684 0.79690 0.78905 0.84278 1.90848 1.75106 1.71173 1.15153 1.45222 1.33434 1.48847 1.10956 1.21109 0.90564 0.92769 0.91972 1.19121 0.92687 0.94219 0.95183 1.21478 1.15474 1.27661 0.93764 0.92330 1.25879 0.98857 0.97666 0.96837 1.70062 1.32964 1.40687 1.12832 0.85373 0.78291 0.78182 0.79042 1.19042 1.20178 1.20122 1.22181 0.85781 0.93466 0.97419 0.91385 0.87070 0.91899 0.83707 0.83456 0.83892 0.84418 0.88026 0.88691 0.90914 0.90179 0.75929 0.93771 0.93923 0.97321 0.97227 0.92513 0.90991 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.20 9.32 -92.44 -0.86 -7.06 16 3 C 0.12 2.10 6.66 22.50 0.15 2.25 16 4 C -0.21 -2.94 9.04 22.36 0.20 -2.74 16 5 C -0.08 -1.01 10.04 22.25 0.22 -0.79 16 6 C -0.16 -2.05 10.04 22.28 0.22 -1.82 16 7 C -0.08 -1.27 8.28 22.26 0.18 -1.08 16 8 C -0.12 -2.16 5.01 -19.77 -0.10 -2.26 16 9 C -0.04 -0.86 3.21 -10.15 -0.03 -0.89 16 10 H 0.09 1.96 7.11 -2.39 -0.02 1.94 16 11 C -0.11 -1.67 6.35 31.78 0.20 -1.47 16 12 C 0.09 1.88 6.15 86.73 0.53 2.41 16 13 N -0.64 -18.83 3.33 -829.76 -2.76 -21.59 16 14 C 0.71 28.02 8.49 179.05 1.52 29.54 16 15 O -0.64 -30.67 16.60 -3.99 -0.07 -30.73 16 16 N -0.73 -28.31 5.52 -478.53 -2.64 -30.95 16 17 C 0.16 7.37 5.61 86.38 0.48 7.86 16 18 C 0.03 1.32 5.09 29.85 0.15 1.48 16 19 C -0.55 -31.17 9.11 25.60 0.23 -30.94 16 20 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 21 C 0.01 0.36 5.46 84.66 0.46 0.82 16 22 N -0.93 -54.80 13.29 21.45 0.28 -54.52 16 23 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.13 3.50 6.33 86.86 0.55 4.04 16 28 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 31 H 0.15 1.34 6.30 -2.91 -0.02 1.33 16 32 H 0.15 0.98 8.06 -2.91 -0.02 0.95 16 33 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 34 H 0.14 1.82 7.01 -2.91 -0.02 1.80 16 35 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.09 1.21 6.78 -2.39 -0.02 1.20 16 37 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.41 13.59 7.46 -92.71 -0.69 12.90 16 40 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.27 14.71 8.31 -92.70 -0.77 13.94 16 45 H 0.07 1.75 7.05 -2.39 -0.02 1.73 16 46 H 0.05 1.64 8.04 -2.38 -0.02 1.62 16 Total: -1.00 -74.57 375.95 2.37 -72.19 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.29 Total: 18.62 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 6.10 Total: 7.72 kcal Atomic # 7 Polarization: -101.94 SS G_CDS: -5.11 Total: -107.06 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -0.93 Total: -37.79 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -74.57 2.37 -72.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343986868.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.397 kcal (2) G-P(sol) polarization free energy of solvation -74.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds