Wall clock time and date at job start Tue Mar 31 2020 12:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 120.00235 * 2 1 4 4 O 1.21285 * 120.00257 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00257 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47244 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46669 * 179.97438 * 6 5 3 8 8 C 1.46500 * 120.00046 * 269.99626 * 7 6 5 9 9 C 1.34774 * 119.99939 * 90.00216 * 7 6 5 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 7 6 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 7 6 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47273 * 300.00548 * 1 2 3 30 30 H 1.09005 * 109.46718 * 59.99765 * 1 2 3 31 31 H 0.97001 * 119.99365 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47496 * 59.99241 * 5 3 2 33 33 H 1.09005 * 109.46473 * 300.00037 * 5 3 2 34 34 H 1.08997 * 109.47162 * 59.99688 * 6 5 3 35 35 H 1.08998 * 109.46814 * 299.99252 * 6 5 3 36 36 H 1.09001 * 109.47153 * 270.00340 * 8 7 6 37 37 H 1.09005 * 109.47231 * 29.99977 * 8 7 6 38 38 H 1.08993 * 109.47434 * 150.00596 * 8 7 6 39 39 H 1.08999 * 109.46642 * 59.99829 * 11 9 7 40 40 H 1.09002 * 109.46876 * 299.99722 * 11 9 7 41 41 H 0.96995 * 120.00002 * 354.72529 * 17 16 14 42 42 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 43 43 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 44 44 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 45 45 H 1.08002 * 119.99968 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.1560 2.6096 -0.0011 7 7 5.6210 2.6094 -0.0011 8 6 6.3535 2.6099 1.2677 9 6 6.2949 2.6090 -1.1682 10 8 5.6885 2.6082 -2.2186 11 6 7.8019 2.6094 -1.1682 12 6 8.3119 2.6081 -2.6106 13 1 7.8641 3.4394 -3.1551 14 6 7.9337 1.3099 -3.2760 15 1 7.8413 0.4087 -2.6881 16 6 7.7058 1.2728 -4.6353 17 7 7.9429 2.3367 -5.3712 18 14 7.0600 -0.2888 -5.4317 19 1 8.2026 -1.1395 -5.8511 20 1 6.2217 -1.0315 -4.4567 21 1 6.2425 0.0634 -6.6203 22 6 9.8117 2.7557 -2.6133 23 6 10.6043 1.7689 -2.0574 24 6 11.9801 1.9024 -2.0633 25 6 12.5631 3.0265 -2.6178 26 6 11.7703 4.0157 -3.1690 27 6 10.3946 3.8803 -3.1665 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.9499 -0.8401 0.0004 32 1 4.0090 0.6534 -0.8907 33 1 4.0095 0.6530 0.8892 34 1 3.7930 3.1236 0.8888 35 1 3.7924 3.1231 -0.8911 36 1 6.5352 3.6377 1.5819 37 1 5.7643 2.0965 2.0276 38 1 7.3058 2.0961 1.1376 39 1 8.1654 1.7198 -0.6538 40 1 8.1650 3.4999 -0.6549 41 1 8.2046 3.1698 -4.9490 42 1 10.1487 0.8924 -1.6208 43 1 12.5995 1.1297 -1.6323 44 1 13.6380 3.1320 -2.6200 45 1 12.2257 4.8941 -3.6019 46 1 9.7753 4.6530 -3.5975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355634276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:37 Heat of formation + Delta-G solvation = -53.636007 kcal Electronic energy + Delta-G solvation = -26743.978459 eV Core-core repulsion = 23019.306997 eV Total energy + Delta-G solvation = -3724.671463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.91381 -39.20292 -38.32961 -35.43190 -34.68298 -34.21309 -31.90879 -31.10431 -30.11307 -28.90122 -27.37707 -26.25130 -25.16242 -23.49837 -22.47197 -21.65031 -20.53157 -19.96267 -18.54808 -17.40622 -16.87609 -16.55036 -16.08239 -15.87342 -15.51813 -15.41824 -14.85164 -14.39600 -14.12540 -13.77055 -13.69238 -13.55023 -13.19068 -12.83631 -12.62561 -12.58568 -12.51368 -12.33624 -12.30365 -12.14290 -12.05040 -11.79272 -11.42929 -11.03207 -10.87190 -10.71452 -10.42595 -10.14829 -10.05910 -9.99880 -9.63843 -9.29003 -9.00052 -8.63615 -8.32507 -8.25143 -8.14273 -7.63419 -6.23060 -3.90748 2.18798 2.24695 2.58487 2.99443 3.43061 3.47674 3.52571 3.54188 3.67432 4.59948 4.66291 4.73785 4.96670 5.00717 5.12490 5.25066 5.28765 5.35140 5.50420 5.54341 5.57839 5.59402 5.62656 5.63025 5.75743 5.76155 5.94141 6.00786 6.07819 6.16156 6.17277 6.26514 6.31295 6.42196 6.66521 6.77742 6.87287 6.94402 7.20483 7.22326 7.30746 7.38068 7.72077 7.84545 7.87617 8.11811 8.22577 8.50624 8.95104 8.99089 9.78743 11.17397 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.003674 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.303579 B = 7619.899871 C = 8925.030516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.519 3.481 4 O -0.541 6.541 5 C -0.158 4.158 6 C 0.136 3.864 7 N -0.636 5.636 8 C 0.083 3.917 9 C 0.514 3.486 10 O -0.494 6.494 11 C -0.114 4.114 12 C 0.071 3.929 13 H 0.051 0.949 14 C -0.567 4.567 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.030 4.030 23 C -0.108 4.108 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.403 0.597 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 -3.733 15.185 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.306 3.694 4 O -0.418 6.418 5 C -0.199 4.199 6 C 0.013 3.987 7 N -0.374 5.374 8 C -0.060 4.060 9 C 0.302 3.698 10 O -0.365 6.365 11 C -0.154 4.154 12 C 0.052 3.948 13 H 0.069 0.931 14 C -0.604 4.604 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.895 3.105 19 H -0.218 1.218 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.031 4.031 23 C -0.127 4.127 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.205 -3.631 13.102 14.558 hybrid contribution 0.677 -0.004 1.512 1.657 sum -4.528 -3.635 14.614 15.726 Atomic orbital electron populations 1.21516 0.79844 1.02042 1.02283 1.45855 1.07743 1.08968 1.76654 1.20718 0.90244 0.83456 0.75013 1.90702 1.70691 1.31252 1.49107 1.22076 0.91203 1.01619 1.05028 1.20962 0.79836 0.93957 1.03992 1.48096 1.05734 1.76863 1.06660 1.21688 0.97335 1.01371 0.85653 1.20944 0.90798 0.75510 0.82522 1.90751 1.69828 1.45603 1.30355 1.21707 0.90804 1.01270 1.01662 1.17889 0.86378 1.00188 0.90380 0.93108 1.21522 1.50277 0.93222 0.95418 0.93710 1.25562 0.94046 1.03350 0.94395 1.70717 1.42940 1.02027 1.38441 0.83602 0.76402 0.74743 0.75726 1.21843 1.21747 1.21118 1.20825 0.98773 0.91324 0.92164 1.20902 0.92653 0.98699 1.00404 1.21007 0.95167 0.97551 1.01040 1.20823 0.98559 0.95521 1.02235 1.20967 0.94105 0.98727 1.00412 1.21074 0.94322 0.98273 1.01162 0.90795 0.92376 0.92208 0.76368 0.87868 0.89044 0.90588 0.89248 0.93115 0.91878 0.90894 0.90294 0.91695 0.91777 0.86786 0.87470 0.87599 0.87468 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.74 10.70 59.85 0.64 1.38 16 2 N -0.74 -7.29 5.71 -67.07 -0.38 -7.68 16 3 C 0.52 6.90 7.83 -10.99 -0.09 6.81 16 4 O -0.54 -9.17 15.98 5.55 0.09 -9.08 16 5 C -0.16 -1.99 6.02 -27.88 -0.17 -2.16 16 6 C 0.14 2.01 4.70 -4.04 -0.02 1.99 16 7 N -0.64 -9.71 2.87 -181.57 -0.52 -10.23 16 8 C 0.08 0.90 10.24 59.85 0.61 1.51 16 9 C 0.51 10.27 7.43 -10.98 -0.08 10.19 16 10 O -0.49 -12.35 14.60 5.55 0.08 -12.27 16 11 C -0.11 -2.20 3.49 -27.88 -0.10 -2.29 16 12 C 0.07 1.68 1.31 -92.92 -0.12 1.56 16 13 H 0.05 1.37 6.23 -51.93 -0.32 1.05 16 14 C -0.57 -15.20 6.40 -34.44 -0.22 -15.42 16 15 H 0.04 1.20 7.82 -52.49 -0.41 0.79 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.67 13.63 55.43 0.76 -26.91 16 18 Si 1.07 26.17 29.91 -169.99 -5.08 21.09 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 C -0.03 -0.66 4.77 -104.62 -0.50 -1.16 16 23 C -0.11 -2.18 8.88 -39.59 -0.35 -2.53 16 24 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 25 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 26 C -0.12 -2.27 10.05 -39.59 -0.40 -2.67 16 27 C -0.13 -2.72 9.67 -39.59 -0.38 -3.10 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.40 2.84 8.83 -40.82 -0.36 2.48 16 32 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.99 8.03 -51.93 -0.42 0.57 16 35 H 0.09 1.61 7.38 -51.93 -0.38 1.23 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 39 H 0.08 1.40 7.12 -51.93 -0.37 1.03 16 40 H 0.06 1.10 8.11 -51.93 -0.42 0.68 16 41 H 0.27 8.19 6.68 -40.82 -0.27 7.92 16 42 H 0.11 2.21 7.80 -52.48 -0.41 1.80 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 44 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 46 H 0.11 2.28 7.95 -52.49 -0.42 1.87 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -35.92 384.56 -8.47 -44.39 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.14 Total: 5.70 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.06 Total: -10.81 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.15 Total: -44.82 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: 0.17 Total: -21.35 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.08 Total: 21.09 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.92 -8.47 -44.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355634276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.243 kcal (2) G-P(sol) polarization free energy of solvation -35.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds