Wall clock time and date at job start Tue Mar 31 2020 12:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34769 * 120.00235 * 2 1 4 4 O 1.21285 * 120.00257 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00257 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47244 * 179.97438 * 5 3 2 7 7 N 1.46503 * 109.46669 * 179.97438 * 6 5 3 8 8 C 1.46500 * 120.00046 * 269.99626 * 7 6 5 9 9 C 1.34774 * 119.99939 * 90.00216 * 7 6 5 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 7 6 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 7 6 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 7 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31515 * 120.00158 * 6.56401 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38238 * 119.99674 * 0.39266 * 24 23 22 26 26 C 1.38237 * 119.99909 * 359.86442 * 25 24 23 27 27 C 1.38229 * 119.99861 * 359.94762 * 26 25 24 28 28 H 1.09001 * 109.47504 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47273 * 300.00548 * 1 2 3 30 30 H 1.09005 * 109.46718 * 59.99765 * 1 2 3 31 31 H 0.97001 * 119.99365 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47496 * 59.99241 * 5 3 2 33 33 H 1.09005 * 109.46473 * 300.00037 * 5 3 2 34 34 H 1.08997 * 109.47162 * 59.99688 * 6 5 3 35 35 H 1.08998 * 109.46814 * 299.99252 * 6 5 3 36 36 H 1.09001 * 109.47153 * 270.00340 * 8 7 6 37 37 H 1.09005 * 109.47231 * 29.99977 * 8 7 6 38 38 H 1.08993 * 109.47434 * 150.00596 * 8 7 6 39 39 H 1.08999 * 109.46642 * 59.99829 * 11 9 7 40 40 H 1.09002 * 109.46876 * 299.99722 * 11 9 7 41 41 H 0.96995 * 120.00002 * 354.72529 * 17 16 14 42 42 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 43 43 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 44 44 H 1.08006 * 119.99774 * 179.83158 * 25 24 23 45 45 H 1.08002 * 119.99968 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 -0.0006 6 6 4.1560 2.6096 -0.0011 7 7 5.6210 2.6094 -0.0011 8 6 6.3535 2.6099 1.2677 9 6 6.2949 2.6090 -1.1682 10 8 5.6885 2.6082 -2.2186 11 6 7.8019 2.6094 -1.1682 12 6 8.3119 2.6081 -2.6106 13 1 7.8641 3.4394 -3.1551 14 6 7.9337 1.3099 -3.2760 15 1 7.8413 0.4087 -2.6881 16 6 7.7058 1.2728 -4.6353 17 7 7.9429 2.3367 -5.3712 18 14 7.0600 -0.2888 -5.4317 19 1 8.2026 -1.1395 -5.8511 20 1 6.2217 -1.0315 -4.4567 21 1 6.2425 0.0634 -6.6203 22 6 9.8117 2.7557 -2.6133 23 6 10.6043 1.7689 -2.0574 24 6 11.9801 1.9024 -2.0633 25 6 12.5631 3.0265 -2.6178 26 6 11.7703 4.0157 -3.1690 27 6 10.3946 3.8803 -3.1665 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.9499 -0.8401 0.0004 32 1 4.0090 0.6534 -0.8907 33 1 4.0095 0.6530 0.8892 34 1 3.7930 3.1236 0.8888 35 1 3.7924 3.1231 -0.8911 36 1 6.5352 3.6377 1.5819 37 1 5.7643 2.0965 2.0276 38 1 7.3058 2.0961 1.1376 39 1 8.1654 1.7198 -0.6538 40 1 8.1650 3.4999 -0.6549 41 1 8.2046 3.1698 -4.9490 42 1 10.1487 0.8924 -1.6208 43 1 12.5995 1.1297 -1.6323 44 1 13.6380 3.1320 -2.6200 45 1 12.2257 4.8941 -3.6019 46 1 9.7753 4.6530 -3.5975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355634276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:36 Heat of formation + Delta-G solvation = -77.971720 kcal Electronic energy + Delta-G solvation = -26745.033735 eV Core-core repulsion = 23019.306997 eV Total energy + Delta-G solvation = -3725.726739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16483 -40.54906 -39.81595 -36.84165 -35.99692 -35.64905 -33.48664 -32.61201 -31.59599 -30.36367 -28.33682 -27.47199 -26.75051 -25.10632 -23.87686 -23.15496 -21.69906 -21.43998 -19.99930 -18.73057 -18.43986 -18.06761 -17.26220 -17.06701 -16.83338 -16.60107 -16.23576 -15.83942 -15.66075 -15.61846 -14.87374 -14.78019 -14.57379 -14.20207 -14.03285 -13.98305 -13.82272 -13.59240 -13.41719 -13.31789 -13.15185 -13.07830 -12.99059 -12.65733 -12.60697 -12.13039 -12.04257 -11.94162 -11.70251 -11.44713 -11.12098 -10.69210 -10.60112 -10.29227 -10.18408 -9.63097 -9.60318 -9.25761 -8.43528 -6.09228 0.68885 0.75170 1.46769 1.53825 1.59214 1.71796 1.83595 1.99321 2.45060 2.61906 3.11773 3.39886 3.74398 3.82585 4.02010 4.11205 4.14293 4.29211 4.30856 4.36841 4.42951 4.44589 4.49428 4.49824 4.58492 4.62002 4.71266 4.78422 4.84734 4.87781 4.90810 4.95817 4.99338 5.12657 5.24476 5.39542 5.41594 5.44140 5.67213 5.75739 5.83664 5.95830 6.25241 6.32039 6.40218 6.46278 6.51901 6.79199 7.17484 7.46205 7.67336 8.96874 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013801 B = 0.003674 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.303579 B = 7619.899871 C = 8925.030516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.726 5.726 3 C 0.515 3.485 4 O -0.585 6.585 5 C -0.147 4.147 6 C 0.136 3.864 7 N -0.624 5.624 8 C 0.073 3.927 9 C 0.508 3.492 10 O -0.561 6.561 11 C -0.105 4.105 12 C 0.072 3.928 13 H 0.002 0.998 14 C -0.552 4.552 15 H 0.043 0.957 16 C -0.027 4.027 17 N -0.946 5.946 18 Si 1.101 2.899 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.296 1.296 22 C -0.054 4.054 23 C -0.121 4.121 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.155 4.155 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.042 0.958 31 H 0.419 0.581 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.099 0.901 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.257 0.743 42 H 0.117 0.883 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.133 0.867 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.162 -5.943 18.228 19.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.378 5.378 3 C 0.302 3.698 4 O -0.466 6.466 5 C -0.188 4.188 6 C 0.013 3.987 7 N -0.359 5.359 8 C -0.068 4.068 9 C 0.298 3.702 10 O -0.437 6.437 11 C -0.145 4.145 12 C 0.053 3.947 13 H 0.020 0.980 14 C -0.590 4.590 15 H 0.061 0.939 16 C -0.225 4.225 17 N -0.584 5.584 18 Si 0.926 3.074 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.223 1.223 22 C -0.055 4.055 23 C -0.139 4.139 24 C -0.141 4.141 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.174 4.174 28 H 0.130 0.870 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.255 0.745 32 H 0.101 0.899 33 H 0.149 0.851 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.119 0.881 40 H 0.106 0.894 41 H 0.067 0.933 42 H 0.135 0.865 43 H 0.162 0.838 44 H 0.164 0.836 45 H 0.151 0.849 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.319 -5.897 16.234 17.588 hybrid contribution 0.121 0.730 0.715 1.029 sum -3.197 -5.167 16.949 18.006 Atomic orbital electron populations 1.21684 0.78734 1.04293 1.01379 1.45793 1.08561 1.08667 1.74744 1.20837 0.90509 0.83758 0.74701 1.90686 1.71437 1.32955 1.51502 1.21942 0.90929 1.00025 1.05856 1.20956 0.79415 0.95469 1.02905 1.48048 1.06115 1.74741 1.07004 1.22059 0.97832 1.03055 0.83890 1.21137 0.91174 0.74945 0.82988 1.90730 1.70880 1.49063 1.33029 1.21576 0.90454 1.03282 0.99174 1.17722 0.87993 0.96826 0.92191 0.97976 1.21790 1.47947 0.94211 0.95059 0.93861 1.26753 0.94599 1.05094 0.96077 1.70816 1.46482 1.02374 1.38761 0.83159 0.76609 0.72623 0.75057 1.19854 1.19915 1.22270 1.20616 0.97507 0.92969 0.94406 1.21009 0.93925 0.98183 1.00821 1.21419 0.94328 0.98470 0.99875 1.21309 1.00501 0.94347 1.00122 1.21283 0.92878 1.00181 1.00010 1.21119 0.95863 0.98214 1.02174 0.86957 0.92542 0.93909 0.74489 0.89889 0.85073 0.88298 0.93680 0.91682 0.88409 0.90057 0.88101 0.89435 0.93256 0.86452 0.83757 0.83584 0.84924 0.89045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 10.70 127.77 1.37 2.64 16 2 N -0.73 -13.19 5.71 -484.52 -2.77 -15.96 16 3 C 0.52 13.46 7.83 87.66 0.69 14.15 16 4 O -0.59 -20.27 15.98 -3.05 -0.05 -20.31 16 5 C -0.15 -3.57 6.02 29.85 0.18 -3.39 16 6 C 0.14 4.03 4.70 86.38 0.41 4.43 16 7 N -0.62 -18.59 2.87 -846.75 -2.43 -21.03 16 8 C 0.07 1.35 10.24 127.77 1.31 2.66 16 9 C 0.51 20.87 7.43 87.66 0.65 21.52 16 10 O -0.56 -29.89 14.60 -3.04 -0.04 -29.93 16 11 C -0.10 -4.06 3.49 29.85 0.10 -3.95 16 12 C 0.07 3.56 1.31 -12.29 -0.02 3.55 16 13 H 0.00 0.12 6.23 -2.39 -0.01 0.10 16 14 C -0.55 -30.53 6.40 25.60 0.16 -30.36 16 15 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 16 C -0.03 -1.62 5.45 84.65 0.46 -1.16 16 17 N -0.95 -61.11 13.63 21.45 0.29 -60.82 16 18 Si 1.10 53.95 29.91 68.60 2.05 56.01 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 22 C -0.05 -2.43 4.77 -19.87 -0.09 -2.52 16 23 C -0.12 -4.68 8.88 22.27 0.20 -4.49 16 24 C -0.12 -3.92 10.05 22.27 0.22 -3.70 16 25 C -0.15 -4.44 10.05 22.27 0.22 -4.22 16 26 C -0.13 -4.39 10.05 22.27 0.22 -4.17 16 27 C -0.16 -6.67 9.67 22.27 0.22 -6.45 16 28 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.42 4.90 8.83 -92.71 -0.82 4.09 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 34 H 0.10 2.46 8.03 -2.39 -0.02 2.44 16 35 H 0.04 1.74 7.38 -2.39 -0.02 1.73 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.10 1.18 8.07 -2.38 -0.02 1.16 16 38 H 0.08 1.41 6.44 -2.39 -0.02 1.39 16 39 H 0.10 3.42 7.12 -2.39 -0.02 3.40 16 40 H 0.09 2.94 8.11 -2.39 -0.02 2.92 16 41 H 0.26 16.79 6.68 -92.71 -0.62 16.17 16 42 H 0.12 4.34 7.80 -2.91 -0.02 4.32 16 43 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 44 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 46 H 0.09 4.12 7.95 -2.91 -0.02 4.10 16 Total: -1.00 -85.94 384.56 3.66 -82.28 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.30 Total: 25.21 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 6.30 Total: -15.45 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -4.91 Total: -97.80 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.09 Total: -50.24 kcal Atomic # 14 Polarization: 53.95 SS G_CDS: 2.05 Total: 56.01 kcal Total: -85.94 3.66 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355634276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.307 kcal (2) G-P(sol) polarization free energy of solvation -85.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds