Wall clock time and date at job start Tue Mar 31 2020 12:23:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35894 * 116.99813 * 2 1
4 4 C 1.38804 * 120.02284 * 0.02562 * 3 2 1
5 5 C 1.38170 * 120.08640 * 180.02562 * 4 3 2
6 6 C 1.38162 * 120.12331 * 359.67911 * 5 4 3
7 7 C 1.38883 * 120.04000 * 0.60194 * 6 5 4
8 8 N 1.39925 * 120.04469 * 179.69614 * 7 6 5
9 9 C 1.34772 * 119.99704 * 324.67501 * 8 7 6
10 10 O 1.21286 * 120.00303 * 4.69004 * 9 8 7
11 11 C 1.50700 * 119.99717 * 184.68040 * 9 8 7
12 12 N 1.46901 * 109.46859 * 180.02562 * 11 9 8
13 13 C 1.46850 * 110.99981 * 66.04886 * 12 11 9
14 14 C 1.53045 * 109.52252 * 174.15715 * 13 12 11
15 15 C 1.53120 * 109.27381 * 59.18079 * 14 13 12
16 16 C 1.53117 * 109.16233 * 302.33971 * 15 14 13
17 17 H 1.09006 * 109.50584 * 297.72008 * 16 15 14
18 18 C 1.50699 * 109.50403 * 177.59713 * 16 15 14
19 19 H 1.07993 * 119.99980 * 275.29947 * 18 16 15
20 20 C 1.37881 * 119.99589 * 95.30339 * 18 16 15
21 21 N 1.31517 * 119.99607 * 178.98359 * 20 18 16
22 22 Si 1.86799 * 120.00222 * 358.97824 * 20 18 16
23 23 H 1.48497 * 109.47065 * 90.04572 * 22 20 18
24 24 H 1.48498 * 109.47156 * 210.04535 * 22 20 18
25 25 H 1.48499 * 109.47126 * 330.04964 * 22 20 18
26 26 C 1.46846 * 111.00409 * 301.83769 * 12 11 9
27 27 C 1.38580 * 120.01782 * 180.02562 * 3 2 1
28 28 H 1.09000 * 109.47187 * 60.00361 * 1 2 3
29 29 H 1.09004 * 109.47509 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47611 * 300.00186 * 1 2 3
31 31 H 1.08006 * 119.95924 * 359.97438 * 4 3 2
32 32 H 1.07999 * 119.93690 * 180.02562 * 5 4 3
33 33 H 1.08006 * 119.98068 * 180.29527 * 6 5 4
34 34 H 0.97004 * 119.99962 * 144.67930 * 8 7 6
35 35 H 1.08997 * 109.47173 * 60.00446 * 11 9 8
36 36 H 1.08994 * 109.47410 * 300.00067 * 11 9 8
37 37 H 1.09002 * 109.46118 * 54.14659 * 13 12 11
38 38 H 1.08996 * 109.46482 * 294.17625 * 13 12 11
39 39 H 1.08995 * 109.50081 * 179.12087 * 14 13 12
40 40 H 1.08993 * 109.50141 * 299.23931 * 14 13 12
41 41 H 1.08999 * 109.52758 * 62.24903 * 15 14 13
42 42 H 1.09002 * 109.51794 * 182.37484 * 15 14 13
43 43 H 0.97003 * 119.99715 * 179.97438 * 21 20 18
44 44 H 1.08995 * 109.46299 * 65.82073 * 26 12 11
45 45 H 1.08997 * 109.45150 * 305.85275 * 26 12 11
46 46 H 1.07997 * 120.06678 * 0.04138 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2108 0.0000
4 6 1.2904 2.3752 0.0005
5 6 1.9162 3.6070 0.0000
6 6 3.2957 3.6839 0.0056
7 6 4.0568 2.5222 -0.0008
8 7 5.4539 2.6000 -0.0015
9 6 6.0732 3.5916 -0.6720
10 8 5.4200 4.4646 -1.2033
11 6 7.5773 3.6159 -0.7612
12 7 8.0029 4.7880 -1.5379
13 6 7.6746 6.0338 -0.8331
14 6 8.2594 7.2234 -1.5980
15 6 7.6789 7.2482 -3.0146
16 6 7.9931 5.9207 -3.7099
17 1 9.0732 5.8015 -3.7957
18 6 7.3744 5.9136 -5.0840
19 1 6.3424 5.6213 -5.2100
20 6 8.1260 6.2801 -6.1803
21 7 7.5920 6.2547 -7.3819
22 14 9.9027 6.8129 -5.9588
23 1 10.7911 5.6272 -6.0586
24 1 10.2617 7.7909 -7.0169
25 1 10.0676 7.4440 -4.6247
26 6 7.4160 4.7688 -2.8838
27 6 3.4298 1.2838 -0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 0.2118 2.3183 0.0005
32 1 1.3260 4.5115 0.0008
33 1 3.7825 4.6480 0.0100
34 1 5.9766 1.9401 0.4805
35 1 7.9269 2.7078 -1.2523
36 1 8.0000 3.6723 0.2419
37 1 8.0968 6.0049 0.1714
38 1 6.5917 6.1402 -0.7688
39 1 8.0023 8.1490 -1.0830
40 1 9.3436 7.1247 -1.6506
41 1 6.5988 7.3859 -2.9634
42 1 8.1245 8.0691 -3.5765
43 1 8.1207 6.5130 -8.1531
44 1 6.3344 4.8811 -2.8100
45 1 7.6505 3.8212 -3.3686
46 1 4.0194 0.3790 -0.0016
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397579871.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:23:43
Heat of formation + Delta-G solvation = -34.388505 kcal
Electronic energy + Delta-G solvation = -26855.163285 eV
Core-core repulsion = 23131.326456 eV
Total energy + Delta-G solvation = -3723.836829 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-40.88959 -39.92735 -38.20993 -36.98446 -34.62690 -33.58955 -32.06786 -30.90574
-30.16469 -29.62424 -27.58981 -26.92112 -24.92964 -23.08800 -22.90360 -21.87418
-21.16956 -20.38682 -18.87842 -18.50520 -17.29535 -16.77162 -16.44938 -16.19678
-16.01088 -15.84827 -15.22840 -15.03035 -14.43745 -14.35747 -13.83251 -13.74753
-13.73403 -13.37518 -12.94023 -12.60577 -12.54777 -12.38704 -12.27720 -12.06335
-11.88523 -11.57515 -11.43742 -11.15933 -10.95939 -10.89564 -10.54576 -10.38478
-10.16303 -9.93092 -9.73844 -9.44671 -9.20419 -8.84241 -8.61449 -8.43147
-8.13326 -7.64677 -5.98446 -3.96949 1.10241 1.34608 2.54608 2.77896
3.26393 3.36624 3.44415 3.50068 3.67902 4.30855 4.51577 4.60992
4.73649 4.85545 4.86319 4.88449 5.16247 5.18387 5.18997 5.30276
5.32593 5.38495 5.45557 5.57101 5.59246 5.73381 5.95907 6.09752
6.11982 6.20298 6.23062 6.32599 6.41183 6.43733 6.52758 6.67038
6.74485 6.90795 6.93959 7.00857 7.18793 7.24241 7.37915 7.54546
7.59627 7.69060 7.94249 8.13856 8.64893 9.08203 9.65437 11.15114
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.018537 B = 0.002989 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1510.110887 B = 9366.388926 C =10043.075523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.319 6.319
3 C 0.142 3.858
4 C -0.226 4.226
5 C -0.062 4.062
6 C -0.155 4.155
7 C 0.189 3.811
8 N -0.679 5.679
9 C 0.477 3.523
10 O -0.497 6.497
11 C 0.038 3.962
12 N -0.516 5.516
13 C 0.050 3.950
14 C -0.118 4.118
15 C -0.112 4.112
16 C 0.024 3.976
17 H 0.034 0.966
18 C -0.507 4.507
19 H 0.070 0.930
20 C 0.069 3.931
21 N -0.905 5.905
22 Si 0.878 3.122
23 H -0.278 1.278
24 H -0.292 1.292
25 H -0.261 1.261
26 C 0.051 3.949
27 C -0.183 4.183
28 H 0.056 0.944
29 H 0.099 0.901
30 H 0.055 0.945
31 H 0.126 0.874
32 H 0.128 0.872
33 H 0.141 0.859
34 H 0.410 0.590
35 H 0.107 0.893
36 H 0.101 0.899
37 H 0.055 0.945
38 H 0.053 0.947
39 H 0.051 0.949
40 H 0.058 0.942
41 H 0.051 0.949
42 H 0.050 0.950
43 H 0.262 0.738
44 H 0.067 0.933
45 H 0.059 0.941
46 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.815 -10.497 20.692 24.821
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.232 6.232
3 C 0.096 3.904
4 C -0.245 4.245
5 C -0.081 4.081
6 C -0.175 4.175
7 C 0.093 3.907
8 N -0.326 5.326
9 C 0.264 3.736
10 O -0.370 6.370
11 C -0.094 4.094
12 N -0.238 5.238
13 C -0.078 4.078
14 C -0.156 4.156
15 C -0.150 4.150
16 C 0.005 3.995
17 H 0.052 0.948
18 C -0.545 4.545
19 H 0.089 0.911
20 C -0.132 4.132
21 N -0.543 5.543
22 Si 0.706 3.294
23 H -0.204 1.204
24 H -0.218 1.218
25 H -0.185 1.185
26 C -0.076 4.076
27 C -0.204 4.204
28 H 0.075 0.925
29 H 0.117 0.883
30 H 0.073 0.927
31 H 0.144 0.856
32 H 0.146 0.854
33 H 0.158 0.842
34 H 0.245 0.755
35 H 0.124 0.876
36 H 0.119 0.881
37 H 0.074 0.926
38 H 0.071 0.929
39 H 0.070 0.930
40 H 0.077 0.923
41 H 0.070 0.930
42 H 0.068 0.932
43 H 0.072 0.928
44 H 0.085 0.915
45 H 0.078 0.922
46 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -8.549 -9.988 19.998 23.933
hybrid contribution -0.002 0.005 0.205 0.205
sum -8.552 -9.983 20.203 24.102
Atomic orbital electron populations
1.23047 0.78328 1.03832 1.01464 1.86043 1.21415 1.26937 1.88822
1.18613 0.91611 0.84148 0.96041 1.21191 0.99946 0.92339 1.11060
1.20851 0.94173 0.97045 0.96025 1.21243 0.93547 0.98591 1.04157
1.17456 0.83221 0.92877 0.97107 1.43951 1.04501 1.31654 1.52480
1.22966 0.92842 0.80744 0.77020 1.90698 1.67180 1.35771 1.43396
1.22423 0.87433 0.98318 1.01232 1.62543 1.57002 1.00433 1.03857
1.22177 0.99796 0.89947 0.95889 1.21644 1.00456 0.95719 0.97738
1.21863 0.99768 1.00466 0.92934 1.19109 0.96418 0.89883 0.94126
0.94765 1.20989 0.99488 1.44976 0.89038 0.91138 1.25061 0.98145
0.94910 0.95062 1.69922 1.37049 1.48904 0.98417 0.86829 0.85655
0.78860 0.78041 1.20429 1.21849 1.18537 1.22623 0.99362 1.00472
0.85095 1.20006 0.91928 0.97054 1.11429 0.92520 0.88308 0.92669
0.85572 0.85447 0.84167 0.75474 0.87550 0.88135 0.92618 0.92889
0.93005 0.92294 0.93011 0.93173 0.92826 0.91548 0.92243 0.85011
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.19 9.81 101.05 0.99 1.18 16
2 O -0.32 -3.38 10.49 -19.41 -0.20 -3.59 16
3 C 0.14 1.65 6.68 -39.25 -0.26 1.38 16
4 C -0.23 -2.44 9.04 -39.40 -0.36 -2.80 16
5 C -0.06 -0.73 10.03 -39.63 -0.40 -1.13 16
6 C -0.16 -2.10 8.69 -39.37 -0.34 -2.44 16
7 C 0.19 2.38 6.29 -83.71 -0.53 1.85 16
8 N -0.68 -7.42 5.33 -9.88 -0.05 -7.48 16
9 C 0.48 6.64 7.09 -10.99 -0.08 6.56 16
10 O -0.50 -9.00 9.07 5.55 0.05 -8.95 16
11 C 0.04 0.48 5.86 -4.98 -0.03 0.45 16
12 N -0.52 -8.89 4.86 -236.12 -1.15 -10.04 16
13 C 0.05 0.82 5.09 -3.83 -0.02 0.81 16
14 C -0.12 -2.13 6.09 -26.65 -0.16 -2.29 16
15 C -0.11 -2.49 5.18 -26.61 -0.14 -2.63 16
16 C 0.02 0.59 1.82 -91.69 -0.17 0.42 16
17 H 0.03 0.86 5.46 -51.93 -0.28 0.57 16
18 C -0.51 -14.67 8.87 -34.44 -0.31 -14.98 16
19 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16
20 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16
21 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16
22 Si 0.88 22.21 26.68 -169.99 -4.54 17.68 16
23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
25 H -0.26 -6.32 6.40 56.52 0.36 -5.96 16
26 C 0.05 1.09 4.24 -3.83 -0.02 1.07 16
27 C -0.18 -2.14 9.90 -39.25 -0.39 -2.53 16
28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16
29 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16
30 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16
31 H 0.13 1.05 6.29 -52.48 -0.33 0.72 16
32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16
33 H 0.14 2.11 6.24 -52.48 -0.33 1.78 16
34 H 0.41 2.90 8.82 -40.82 -0.36 2.54 16
35 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16
36 H 0.10 0.94 8.06 -51.93 -0.42 0.52 16
37 H 0.06 0.78 8.06 -51.93 -0.42 0.36 16
38 H 0.05 0.96 6.00 -51.93 -0.31 0.64 16
39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16
40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16
41 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16
42 H 0.05 1.15 7.47 -51.93 -0.39 0.76 16
43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
44 H 0.07 1.55 5.36 -51.93 -0.28 1.27 16
45 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16
46 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16
LS Contribution 359.59 15.07 5.42 5.42
Total: -1.00 -34.88 359.59 -8.88 -43.76
By element:
Atomic # 1 Polarization: 10.83 SS G_CDS: -6.89 Total: 3.93 kcal
Atomic # 6 Polarization: -10.84 SS G_CDS: -2.30 Total: -13.13 kcal
Atomic # 7 Polarization: -44.69 SS G_CDS: -0.43 Total: -45.12 kcal
Atomic # 8 Polarization: -12.38 SS G_CDS: -0.15 Total: -12.54 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -4.54 Total: 17.68 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -34.88 -8.88 -43.76 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397579871.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.372 kcal
(2) G-P(sol) polarization free energy of solvation -34.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.505 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds