Wall clock time and date at job start Tue Mar 31 2020 12:23:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35894 * 116.99813 * 2 1
4 4 C 1.38804 * 120.02284 * 0.02562 * 3 2 1
5 5 C 1.38170 * 120.08640 * 180.02562 * 4 3 2
6 6 C 1.38162 * 120.12331 * 359.67911 * 5 4 3
7 7 C 1.38883 * 120.04000 * 0.60194 * 6 5 4
8 8 N 1.39925 * 120.04469 * 179.69614 * 7 6 5
9 9 C 1.34772 * 119.99704 * 324.67501 * 8 7 6
10 10 O 1.21286 * 120.00303 * 4.69004 * 9 8 7
11 11 C 1.50700 * 119.99717 * 184.68040 * 9 8 7
12 12 N 1.46901 * 109.46859 * 180.02562 * 11 9 8
13 13 C 1.46850 * 110.99981 * 66.04886 * 12 11 9
14 14 C 1.53045 * 109.52252 * 174.15715 * 13 12 11
15 15 C 1.53120 * 109.27381 * 59.18079 * 14 13 12
16 16 C 1.53117 * 109.16233 * 302.33971 * 15 14 13
17 17 H 1.09006 * 109.50584 * 297.72008 * 16 15 14
18 18 C 1.50699 * 109.50403 * 177.59713 * 16 15 14
19 19 H 1.07993 * 119.99980 * 275.29947 * 18 16 15
20 20 C 1.37881 * 119.99589 * 95.30339 * 18 16 15
21 21 N 1.31517 * 119.99607 * 178.98359 * 20 18 16
22 22 Si 1.86799 * 120.00222 * 358.97824 * 20 18 16
23 23 H 1.48497 * 109.47065 * 90.04572 * 22 20 18
24 24 H 1.48498 * 109.47156 * 210.04535 * 22 20 18
25 25 H 1.48499 * 109.47126 * 330.04964 * 22 20 18
26 26 C 1.46846 * 111.00409 * 301.83769 * 12 11 9
27 27 C 1.38580 * 120.01782 * 180.02562 * 3 2 1
28 28 H 1.09000 * 109.47187 * 60.00361 * 1 2 3
29 29 H 1.09004 * 109.47509 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.47611 * 300.00186 * 1 2 3
31 31 H 1.08006 * 119.95924 * 359.97438 * 4 3 2
32 32 H 1.07999 * 119.93690 * 180.02562 * 5 4 3
33 33 H 1.08006 * 119.98068 * 180.29527 * 6 5 4
34 34 H 0.97004 * 119.99962 * 144.67930 * 8 7 6
35 35 H 1.08997 * 109.47173 * 60.00446 * 11 9 8
36 36 H 1.08994 * 109.47410 * 300.00067 * 11 9 8
37 37 H 1.09002 * 109.46118 * 54.14659 * 13 12 11
38 38 H 1.08996 * 109.46482 * 294.17625 * 13 12 11
39 39 H 1.08995 * 109.50081 * 179.12087 * 14 13 12
40 40 H 1.08993 * 109.50141 * 299.23931 * 14 13 12
41 41 H 1.08999 * 109.52758 * 62.24903 * 15 14 13
42 42 H 1.09002 * 109.51794 * 182.37484 * 15 14 13
43 43 H 0.97003 * 119.99715 * 179.97438 * 21 20 18
44 44 H 1.08995 * 109.46299 * 65.82073 * 26 12 11
45 45 H 1.08997 * 109.45150 * 305.85275 * 26 12 11
46 46 H 1.07997 * 120.06678 * 0.04138 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0459 1.2108 0.0000
4 6 1.2904 2.3752 0.0005
5 6 1.9162 3.6070 0.0000
6 6 3.2957 3.6839 0.0056
7 6 4.0568 2.5222 -0.0008
8 7 5.4539 2.6000 -0.0015
9 6 6.0732 3.5916 -0.6720
10 8 5.4200 4.4646 -1.2033
11 6 7.5773 3.6159 -0.7612
12 7 8.0029 4.7880 -1.5379
13 6 7.6746 6.0338 -0.8331
14 6 8.2594 7.2234 -1.5980
15 6 7.6789 7.2482 -3.0146
16 6 7.9931 5.9207 -3.7099
17 1 9.0732 5.8015 -3.7957
18 6 7.3744 5.9136 -5.0840
19 1 6.3424 5.6213 -5.2100
20 6 8.1260 6.2801 -6.1803
21 7 7.5920 6.2547 -7.3819
22 14 9.9027 6.8129 -5.9588
23 1 10.7911 5.6272 -6.0586
24 1 10.2617 7.7909 -7.0169
25 1 10.0676 7.4440 -4.6247
26 6 7.4160 4.7688 -2.8838
27 6 3.4298 1.2838 -0.0005
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8899
31 1 0.2118 2.3183 0.0005
32 1 1.3260 4.5115 0.0008
33 1 3.7825 4.6480 0.0100
34 1 5.9766 1.9401 0.4805
35 1 7.9269 2.7078 -1.2523
36 1 8.0000 3.6723 0.2419
37 1 8.0968 6.0049 0.1714
38 1 6.5917 6.1402 -0.7688
39 1 8.0023 8.1490 -1.0830
40 1 9.3436 7.1247 -1.6506
41 1 6.5988 7.3859 -2.9634
42 1 8.1245 8.0691 -3.5765
43 1 8.1207 6.5130 -8.1531
44 1 6.3344 4.8811 -2.8100
45 1 7.6505 3.8212 -3.3686
46 1 4.0194 0.3790 -0.0016
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397579871.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:23:42
Heat of formation + Delta-G solvation = -60.001269 kcal
Electronic energy + Delta-G solvation = -26856.273938 eV
Core-core repulsion = 23131.326456 eV
Total energy + Delta-G solvation = -3724.947481 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-41.92545 -40.87210 -39.42889 -38.10233 -35.65392 -35.35519 -33.90070 -31.94462
-31.77801 -30.60954 -28.40068 -27.93615 -26.92770 -24.38862 -23.81111 -23.16771
-22.68007 -21.42850 -20.52590 -19.41288 -18.99128 -18.30236 -17.39294 -17.10729
-16.95152 -16.69393 -16.60853 -16.14001 -15.97542 -15.73461 -15.39143 -14.98325
-14.69637 -14.59526 -14.57307 -14.11890 -13.81574 -13.71325 -13.34244 -13.19009
-13.01139 -12.89439 -12.79302 -12.64805 -12.26518 -12.15850 -11.93567 -11.79581
-11.66446 -11.44899 -11.30856 -11.12677 -10.99252 -10.82536 -10.61784 -9.51766
-9.06404 -9.03251 -8.28127 -6.32166 0.18495 0.41825 1.36114 1.37764
1.51605 1.52510 1.91529 2.37439 2.49130 2.76621 2.96858 3.12724
3.73826 3.85426 4.07651 4.11720 4.17614 4.21053 4.25420 4.32713
4.39983 4.43397 4.45916 4.50234 4.56364 4.62768 4.69443 4.74147
4.77925 4.92111 4.97265 5.04995 5.13597 5.22007 5.25446 5.26231
5.29719 5.32235 5.49495 5.60585 5.66987 5.77610 5.84271 6.08733
6.14221 6.39122 6.39368 6.46483 6.76097 7.15421 7.33795 8.89679
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.018537 B = 0.002989 C = 0.002787
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1510.110887 B = 9366.388926 C =10043.075523
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.332 6.332
3 C 0.135 3.865
4 C -0.224 4.224
5 C -0.070 4.070
6 C -0.180 4.180
7 C 0.175 3.825
8 N -0.661 5.661
9 C 0.475 3.525
10 O -0.546 6.546
11 C 0.039 3.961
12 N -0.517 5.517
13 C 0.051 3.949
14 C -0.112 4.112
15 C -0.110 4.110
16 C 0.023 3.977
17 H 0.036 0.964
18 C -0.514 4.514
19 H 0.017 0.983
20 C 0.008 3.992
21 N -0.955 5.955
22 Si 0.950 3.050
23 H -0.266 1.266
24 H -0.288 1.288
25 H -0.240 1.240
26 C 0.066 3.934
27 C -0.188 4.188
28 H 0.060 0.940
29 H 0.121 0.879
30 H 0.068 0.932
31 H 0.152 0.848
32 H 0.142 0.858
33 H 0.119 0.881
34 H 0.429 0.571
35 H 0.126 0.874
36 H 0.148 0.852
37 H 0.098 0.902
38 H 0.035 0.965
39 H 0.076 0.924
40 H 0.067 0.933
41 H 0.029 0.971
42 H 0.038 0.962
43 H 0.265 0.735
44 H 0.041 0.959
45 H 0.049 0.951
46 H 0.148 0.852
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.278 -11.553 23.668 27.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.245 6.245
3 C 0.089 3.911
4 C -0.243 4.243
5 C -0.089 4.089
6 C -0.200 4.200
7 C 0.080 3.920
8 N -0.309 5.309
9 C 0.264 3.736
10 O -0.422 6.422
11 C -0.092 4.092
12 N -0.239 5.239
13 C -0.076 4.076
14 C -0.149 4.149
15 C -0.149 4.149
16 C 0.003 3.997
17 H 0.054 0.946
18 C -0.553 4.553
19 H 0.036 0.964
20 C -0.189 4.189
21 N -0.596 5.596
22 Si 0.773 3.227
23 H -0.191 1.191
24 H -0.215 1.215
25 H -0.164 1.164
26 C -0.062 4.062
27 C -0.209 4.209
28 H 0.079 0.921
29 H 0.139 0.861
30 H 0.087 0.913
31 H 0.170 0.830
32 H 0.160 0.840
33 H 0.137 0.863
34 H 0.269 0.731
35 H 0.144 0.856
36 H 0.165 0.835
37 H 0.116 0.884
38 H 0.053 0.947
39 H 0.095 0.905
40 H 0.086 0.914
41 H 0.048 0.952
42 H 0.057 0.943
43 H 0.074 0.926
44 H 0.059 0.941
45 H 0.067 0.933
46 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges -7.018 -11.095 23.036 26.514
hybrid contribution -0.706 0.227 -0.703 1.022
sum -7.725 -10.869 22.333 26.011
Atomic orbital electron populations
1.23363 0.76295 1.05671 1.02308 1.86032 1.23557 1.26368 1.88571
1.18816 0.91892 0.84857 0.95574 1.21460 1.01291 0.91640 1.09950
1.21082 0.93759 0.98273 0.95761 1.21239 0.94604 0.98180 1.05986
1.17556 0.83808 0.92990 0.97637 1.43693 1.04159 1.31282 1.51733
1.23165 0.93459 0.80515 0.76509 1.90708 1.68136 1.37824 1.45576
1.22654 0.86442 0.97025 1.03122 1.62421 1.56641 1.02423 1.02384
1.22213 0.98964 0.89039 0.97405 1.21605 1.00591 0.97877 0.94859
1.21724 0.98659 0.98552 0.95916 1.19061 0.95933 0.92418 0.92249
0.94603 1.21256 0.97435 1.44416 0.92155 0.96428 1.26022 1.03485
0.94946 0.94402 1.70086 1.39286 1.50643 0.99570 0.85691 0.79152
0.78897 0.78923 1.19098 1.21478 1.16373 1.22166 0.97807 0.98488
0.87694 1.20196 0.92478 0.97159 1.11111 0.92127 0.86126 0.91308
0.83047 0.84026 0.86318 0.73113 0.85585 0.83492 0.88430 0.94695
0.90504 0.91413 0.95207 0.94304 0.92599 0.94112 0.93287 0.83410
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.20 9.81 113.37 1.11 1.31 16
2 O -0.33 -6.49 10.49 -92.35 -0.97 -7.46 16
3 C 0.13 2.98 6.68 22.49 0.15 3.13 16
4 C -0.22 -4.62 9.04 22.39 0.20 -4.42 16
5 C -0.07 -1.65 10.03 22.24 0.22 -1.43 16
6 C -0.18 -5.02 8.69 22.41 0.19 -4.82 16
7 C 0.18 4.38 6.29 38.14 0.24 4.62 16
8 N -0.66 -13.60 5.33 -303.55 -1.62 -15.22 16
9 C 0.48 12.79 7.09 87.66 0.62 13.41 16
10 O -0.55 -20.38 9.07 -3.05 -0.03 -20.41 16
11 C 0.04 0.86 5.86 85.56 0.50 1.36 16
12 N -0.52 -16.69 4.86 -900.93 -4.38 -21.07 16
13 C 0.05 1.57 5.09 86.33 0.44 2.01 16
14 C -0.11 -3.77 6.09 30.65 0.19 -3.58 16
15 C -0.11 -4.93 5.18 30.67 0.16 -4.77 16
16 C 0.02 1.12 1.82 -11.49 -0.02 1.10 16
17 H 0.04 1.75 5.46 -2.38 -0.01 1.74 16
18 C -0.51 -31.33 8.87 25.60 0.23 -31.10 16
19 H 0.02 1.21 8.06 -2.91 -0.02 1.18 16
20 C 0.01 0.46 5.47 84.66 0.46 0.93 16
21 N -0.96 -62.45 13.96 21.45 0.30 -62.15 16
22 Si 0.95 46.13 26.68 68.60 1.83 47.96 16
23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16
24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16
25 H -0.24 -10.79 6.40 99.48 0.64 -10.16 16
26 C 0.07 2.87 4.24 86.33 0.37 3.24 16
27 C -0.19 -4.23 9.90 22.49 0.22 -4.01 16
28 H 0.06 0.63 7.66 -2.39 -0.02 0.61 16
29 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16
30 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16
31 H 0.15 2.22 6.29 -2.91 -0.02 2.21 16
32 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16
33 H 0.12 3.81 6.24 -2.91 -0.02 3.79 16
34 H 0.43 5.01 8.82 -92.71 -0.82 4.19 16
35 H 0.13 2.34 8.14 -2.39 -0.02 2.32 16
36 H 0.15 1.94 8.06 -2.39 -0.02 1.93 16
37 H 0.10 2.24 8.06 -2.39 -0.02 2.22 16
38 H 0.03 1.23 6.00 -2.39 -0.01 1.22 16
39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16
42 H 0.04 1.77 7.47 -2.39 -0.02 1.75 16
43 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16
44 H 0.04 2.01 5.36 -2.39 -0.01 2.00 16
45 H 0.05 2.17 8.12 -2.39 -0.02 2.15 16
46 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16
Total: -1.00 -81.56 359.59 0.53 -81.02
By element:
Atomic # 1 Polarization: 20.24 SS G_CDS: 0.11 Total: 20.35 kcal
Atomic # 6 Polarization: -28.31 SS G_CDS: 5.29 Total: -23.02 kcal
Atomic # 7 Polarization: -92.74 SS G_CDS: -5.70 Total: -98.44 kcal
Atomic # 8 Polarization: -26.87 SS G_CDS: -1.00 Total: -27.87 kcal
Atomic # 14 Polarization: 46.13 SS G_CDS: 1.83 Total: 47.96 kcal
Total: -81.56 0.53 -81.02 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397579871.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.023 kcal
(2) G-P(sol) polarization free energy of solvation -81.556 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.025 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds