Wall clock time and date at job start Tue Mar 31 2020 12:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99909 * 2 1 4 4 H 1.09006 * 109.46882 * 30.00749 * 3 2 1 5 5 C 1.52996 * 109.46933 * 150.00147 * 3 2 1 6 6 N 1.46506 * 109.47293 * 300.00527 * 5 3 2 7 7 C 1.34780 * 119.99745 * 179.97438 * 6 5 3 8 8 O 1.21590 * 119.99993 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99704 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99966 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47299 * 184.79547 * 10 9 7 12 12 C 1.50704 * 115.54588 * 294.81766 * 11 10 9 13 13 H 1.07995 * 120.00086 * 95.20380 * 12 11 10 14 14 C 1.37877 * 119.99726 * 274.92551 * 12 11 10 15 15 N 1.31515 * 120.00084 * 355.41881 * 14 12 11 16 16 Si 1.86796 * 120.00102 * 175.42113 * 14 12 11 17 17 H 1.48498 * 109.47239 * 90.00025 * 16 14 12 18 18 H 1.48493 * 109.47332 * 210.00070 * 16 14 12 19 19 H 1.48499 * 109.47076 * 330.00113 * 16 14 12 20 20 C 1.53000 * 117.50122 * 80.48247 * 11 10 9 21 21 C 1.52994 * 117.50156 * 149.14359 * 11 10 9 22 22 C 1.50692 * 109.47595 * 270.00740 * 3 2 1 23 23 C 1.38244 * 119.99870 * 324.72716 * 22 3 2 24 24 C 1.38234 * 119.99775 * 179.79168 * 23 22 3 25 25 C 1.38234 * 119.99992 * 0.43700 * 24 23 22 26 26 C 1.38226 * 120.00202 * 359.81432 * 25 24 23 27 27 C 1.38234 * 120.00434 * 145.00272 * 22 3 2 28 28 H 1.09000 * 109.46722 * 299.99498 * 1 2 3 29 29 H 1.08997 * 109.47280 * 59.99558 * 1 2 3 30 30 H 1.08998 * 109.47024 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47490 * 180.02562 * 5 3 2 32 32 H 1.09000 * 109.47163 * 60.00314 * 5 3 2 33 33 H 0.96991 * 119.99780 * 359.97438 * 6 5 3 34 34 H 0.96999 * 119.99492 * 359.97438 * 9 7 6 35 35 H 1.09001 * 109.47302 * 64.79393 * 10 9 7 36 36 H 1.09005 * 109.46853 * 304.79585 * 10 9 7 37 37 H 0.96997 * 120.00397 * 184.99696 * 15 14 12 38 38 H 1.08997 * 117.50142 * 215.00458 * 20 11 10 39 39 H 1.09000 * 117.49511 * 0.02905 * 20 11 10 40 40 H 1.08996 * 117.49909 * 359.97438 * 21 11 10 41 41 H 1.09006 * 117.50020 * 144.97002 * 21 11 10 42 42 H 1.08004 * 119.99867 * 359.97438 * 23 22 3 43 43 H 1.08001 * 119.99782 * 180.27138 * 24 23 22 44 44 H 1.08000 * 119.99457 * 179.83631 * 25 24 23 45 45 H 1.08004 * 120.00397 * 179.97438 * 26 25 24 46 46 H 1.08001 * 119.99407 * 359.97415 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5140 5 6 3.3589 1.2633 0.7212 6 7 3.1603 0.8170 2.1024 7 6 4.2164 0.7028 2.9321 8 8 5.3339 0.9696 2.5341 9 7 4.0338 0.2917 4.2026 10 6 5.1815 0.1681 5.1046 11 6 4.7211 -0.4256 6.4374 12 6 3.7741 0.4309 7.2378 13 1 2.7081 0.2782 7.1567 14 6 4.2689 1.4058 8.0780 15 7 5.5669 1.5288 8.2500 16 14 3.0956 2.5517 8.9721 17 1 2.7275 1.9589 10.2830 18 1 3.7554 3.8640 9.1902 19 1 1.8712 2.7432 8.1541 20 6 4.5330 -1.9424 6.5079 21 6 5.7227 -1.2848 7.2117 22 6 2.2144 1.7646 -1.4207 23 6 2.5649 0.8521 -2.3983 24 6 2.7479 1.2725 -3.7024 25 6 2.5895 2.6068 -4.0271 26 6 2.2442 3.5200 -3.0487 27 6 2.0569 3.0990 -1.7454 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 3.8021 2.2591 0.7217 32 1 4.0242 0.5694 0.2073 33 1 2.2690 0.6037 2.4198 34 1 3.1423 0.0785 4.5199 35 1 5.6164 1.1527 5.2763 36 1 5.9286 -0.4856 4.6544 37 1 5.9126 2.1653 8.8951 38 1 3.7243 -2.3207 7.1331 39 1 4.7377 -2.5173 5.6047 40 1 6.7094 -1.4275 6.7713 41 1 5.6970 -1.2302 8.3001 42 1 2.6927 -0.1897 -2.1437 43 1 3.0174 0.5589 -4.4670 44 1 2.7351 2.9356 -5.0455 45 1 2.1208 4.5626 -3.3023 46 1 1.7871 3.8124 -0.9808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430180401.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:56 Heat of formation + Delta-G solvation = -27.882949 kcal Electronic energy + Delta-G solvation = -26051.621717 eV Core-core repulsion = 22328.066990 eV Total energy + Delta-G solvation = -3723.554726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.09689 -39.19618 -37.85911 -36.70264 -34.40863 -33.21015 -32.14446 -31.91625 -31.12882 -28.66744 -26.69280 -25.94595 -25.01585 -23.36935 -22.78576 -21.17224 -21.13297 -20.20823 -19.35028 -17.81524 -17.32676 -16.88518 -16.46277 -15.92280 -15.49139 -15.04428 -14.93218 -14.74137 -14.65430 -14.54611 -13.97561 -13.67756 -13.59478 -13.34258 -13.16455 -12.97407 -12.68091 -12.58986 -11.89100 -11.77311 -11.57558 -11.52521 -11.45356 -11.06027 -10.98599 -10.91765 -10.52208 -10.20053 -10.02701 -9.69357 -9.42582 -9.16373 -9.04177 -9.01334 -8.80431 -8.45949 -8.19934 -7.93518 -6.05200 -4.14796 1.03568 1.16638 3.20562 3.25956 3.34109 3.35120 3.41777 3.55864 3.85360 4.35886 4.43580 4.60341 4.75565 4.83046 4.84792 4.89592 4.97029 5.13807 5.16255 5.22749 5.26527 5.34521 5.42496 5.44941 5.65020 5.68732 5.79591 5.87811 6.07840 6.19463 6.26028 6.27599 6.39240 6.52314 6.64083 6.72742 6.75039 6.78913 6.89565 6.91293 7.15859 7.37238 7.45690 7.49633 7.66237 7.83089 8.37022 8.70713 8.86443 9.24883 9.51909 11.02013 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018079 B = 0.002582 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.402959 B =10843.791835 C =11168.756375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.120 3.880 4 H 0.077 0.923 5 C 0.153 3.847 6 N -0.749 5.749 7 C 0.699 3.301 8 O -0.605 6.605 9 N -0.720 5.720 10 C 0.182 3.818 11 C 0.024 3.976 12 C -0.499 4.499 13 H 0.059 0.941 14 C 0.073 3.927 15 N -0.874 5.874 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.211 4.211 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.090 4.090 24 C -0.124 4.124 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.108 4.108 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.395 0.605 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.129 0.871 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.738 0.387 -20.917 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.290 6.290 3 C 0.061 3.939 4 H 0.095 0.905 5 C 0.028 3.972 6 N -0.406 5.406 7 C 0.398 3.602 8 O -0.485 6.485 9 N -0.373 5.373 10 C 0.059 3.941 11 C 0.024 3.976 12 C -0.536 4.536 13 H 0.077 0.923 14 C -0.131 4.131 15 N -0.510 5.510 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.248 4.248 21 C -0.180 4.180 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.142 4.142 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.126 4.126 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.405 0.624 -21.196 23.198 hybrid contribution -1.580 0.738 0.826 1.930 sum -10.986 1.363 -20.371 23.184 Atomic orbital electron populations 1.22834 0.80886 1.02962 1.00090 1.87993 1.19774 1.26471 1.94761 1.21238 0.95389 0.85534 0.91706 0.90533 1.21123 0.94228 1.00943 0.80939 1.44917 1.09443 1.74659 1.11611 1.16013 0.84192 0.78678 0.81267 1.90873 1.22881 1.58047 1.76653 1.45136 1.12305 1.70460 1.09374 1.20844 0.85156 1.00532 0.87592 1.19050 0.98717 0.87314 0.92567 1.20340 0.91850 1.16181 1.25254 0.92287 1.24990 0.94974 0.96791 0.96380 1.69990 1.11416 1.35793 1.33843 0.86625 0.81071 0.80560 0.79919 1.20745 1.21210 1.19877 1.23008 1.01710 0.98469 1.01611 1.22464 0.91866 1.04542 0.99157 1.20218 1.01427 0.94006 0.95623 1.21050 0.97268 1.00095 0.92391 1.21193 1.00473 0.96020 0.96530 1.21198 0.99471 0.93545 0.99376 1.21116 1.00275 0.99659 0.93072 1.21053 0.99809 0.95019 0.96752 0.93712 0.94089 0.89417 0.90410 0.90986 0.77195 0.77018 0.91769 0.94414 0.92897 0.90477 0.91700 0.91800 0.89544 0.85306 0.85990 0.86157 0.85976 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.81 101.05 1.09 1.32 16 2 O -0.37 -3.90 9.25 -35.23 -0.33 -4.23 16 3 C 0.12 1.22 2.40 -27.89 -0.07 1.15 16 4 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 5 C 0.15 2.01 5.35 -4.04 -0.02 1.99 16 6 N -0.75 -11.13 5.45 -65.22 -0.36 -11.49 16 7 C 0.70 13.78 8.57 -86.91 -0.74 13.03 16 8 O -0.60 -14.30 16.34 5.29 0.09 -14.21 16 9 N -0.72 -14.42 5.48 -65.22 -0.36 -14.78 16 10 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 11 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 12 C -0.50 -12.86 8.59 -34.44 -0.30 -13.16 16 13 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 14 C 0.07 1.93 5.43 -17.82 -0.10 1.84 16 15 N -0.87 -24.39 12.65 55.43 0.70 -23.69 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 21 C -0.14 -3.30 9.14 -26.70 -0.24 -3.55 16 22 C -0.11 -1.11 4.96 -104.62 -0.52 -1.63 16 23 C -0.09 -0.89 9.35 -39.58 -0.37 -1.26 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 26 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 27 C -0.11 -0.98 9.68 -39.58 -0.38 -1.36 16 28 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 4.92 8.36 -40.82 -0.34 4.58 16 34 H 0.40 7.21 8.34 -40.82 -0.34 6.87 16 35 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.04 0.88 8.09 -51.93 -0.42 0.46 16 37 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 42 H 0.13 1.27 7.64 -52.48 -0.40 0.87 16 43 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 44 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 391.25 15.07 5.90 5.90 Total: -1.00 -31.45 391.25 -10.10 -41.56 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -7.36 Total: 11.40 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -3.36 Total: -6.01 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: -0.01 Total: -49.95 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.24 Total: -18.44 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.45 -10.10 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430180401.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.673 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds