Wall clock time and date at job start Tue Mar 31 2020 11:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46502 * 120.00068 * 2 1 4 4 C 1.52998 * 109.47153 * 89.99505 * 3 2 1 5 5 O 1.42897 * 109.47254 * 65.00341 * 4 3 2 6 6 C 1.42892 * 114.00135 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47401 * 179.97438 * 6 5 4 8 8 C 1.52999 * 117.50102 * 243.62014 * 7 6 5 9 9 C 1.53004 * 60.00139 * 252.50796 * 8 7 6 10 10 C 1.34778 * 120.00040 * 179.97438 * 2 1 3 11 11 O 1.21590 * 120.00076 * 180.02562 * 10 2 1 12 12 N 1.34773 * 120.00200 * 0.02562 * 10 2 1 13 13 C 1.39952 * 120.00228 * 174.85535 * 12 10 2 14 14 C 1.39289 * 119.94455 * 145.75651 * 13 12 10 15 15 C 1.38487 * 120.42935 * 180.02562 * 14 13 12 16 16 C 1.37680 * 120.32100 * 359.97438 * 15 14 13 17 17 C 1.40741 * 119.88389 * 0.02562 * 16 15 14 18 18 C 1.41412 * 120.21321 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00288 * 205.18103 * 18 17 16 20 20 C 1.39932 * 119.99538 * 25.17407 * 18 17 16 21 21 N 1.30829 * 120.00476 * 16.79873 * 20 18 17 22 22 Si 1.86802 * 119.99805 * 196.79666 * 20 18 17 23 23 H 1.48499 * 109.47111 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47266 * 120.00200 * 22 20 18 25 25 H 1.48507 * 109.47159 * 240.00223 * 22 20 18 26 26 C 1.38228 * 119.95034 * 325.48760 * 13 12 10 27 27 H 1.09008 * 109.46932 * 90.00415 * 1 2 3 28 28 H 1.09004 * 109.47243 * 210.00181 * 1 2 3 29 29 H 1.08998 * 109.47362 * 330.00826 * 1 2 3 30 30 H 1.09001 * 109.46882 * 329.99685 * 3 2 1 31 31 H 1.08996 * 109.46806 * 209.99823 * 3 2 1 32 32 H 1.08997 * 109.47354 * 304.99933 * 4 3 2 33 33 H 1.09000 * 109.46934 * 184.99993 * 4 3 2 34 34 H 1.09000 * 109.47644 * 59.99607 * 6 5 4 35 35 H 1.09000 * 109.47255 * 299.99673 * 6 5 4 36 36 H 1.09006 * 115.54959 * 29.33223 * 7 6 5 37 37 H 1.09000 * 117.49411 * 0.02562 * 8 7 6 38 38 H 1.08999 * 117.49635 * 145.01609 * 8 7 6 39 39 H 1.09000 * 117.49575 * 252.51530 * 9 8 7 40 40 H 1.08993 * 117.49787 * 107.48398 * 9 8 7 41 41 H 0.97006 * 119.99535 * 354.85659 * 12 10 2 42 42 H 1.08002 * 119.78630 * 0.02562 * 14 13 12 43 43 H 1.08007 * 119.84074 * 180.02562 * 15 14 13 44 44 H 1.07997 * 120.06071 * 179.97438 * 16 15 14 45 45 H 0.96998 * 120.00382 * 179.97438 * 21 20 18 46 46 H 1.08001 * 120.15616 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7105 1.4425 5 8 3.3208 0.7727 2.0815 6 6 3.6238 1.0936 3.4405 7 6 4.5548 0.0272 4.0211 8 6 4.0259 -0.8156 5.1833 9 6 5.0918 0.2526 5.4359 10 6 2.1389 -1.1672 0.0005 11 8 3.3548 -1.1672 0.0010 12 7 1.4651 -2.3344 0.0005 13 6 2.1607 -3.5440 -0.1076 14 6 1.6964 -4.6751 0.5596 15 6 2.3771 -5.8770 0.4600 16 6 3.5210 -5.9670 -0.3008 17 6 4.0020 -4.8324 -0.9807 18 6 5.1766 -4.9168 -1.7637 19 1 5.7693 -4.0325 -1.9452 20 6 5.5708 -6.1463 -2.3031 21 7 4.7161 -7.1344 -2.3729 22 14 7.3175 -6.3768 -2.9238 23 1 8.0805 -5.1170 -2.7342 24 1 7.9724 -7.4719 -2.1642 25 1 7.2881 -6.7245 -4.3673 26 6 3.3042 -3.6157 -0.8809 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6084 2.0284 -0.5139 31 1 3.1499 1.1383 -0.5138 32 1 1.5061 1.7550 1.9815 33 1 2.9180 2.6960 1.4437 34 1 2.7016 1.1250 4.0208 35 1 4.1135 2.0664 3.4837 36 1 5.2149 -0.4613 3.3042 37 1 3.0145 -0.6106 5.5340 38 1 4.3377 -1.8589 5.2311 39 1 6.1049 -0.0880 5.6499 40 1 4.7817 1.1606 5.9531 41 1 0.4979 -2.3360 0.0755 42 1 0.7997 -4.6144 1.1586 43 1 2.0083 -6.7482 0.9811 44 1 4.0487 -6.9063 -0.3752 45 1 4.9893 -7.9865 -2.7472 46 1 3.6623 -2.7404 -1.4024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455925276.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:59 Heat of formation + Delta-G solvation = -36.170646 kcal Electronic energy + Delta-G solvation = -26788.493689 eV Core-core repulsion = 23064.579581 eV Total energy + Delta-G solvation = -3723.914108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.47368 -39.53247 -39.03719 -37.62037 -36.37410 -36.12629 -34.77097 -31.73084 -31.37096 -29.55628 -27.83277 -27.33260 -27.12829 -24.30137 -23.31614 -22.86528 -22.50650 -21.62894 -20.65247 -19.66952 -18.86649 -17.93817 -17.44559 -17.32033 -16.89223 -16.53418 -16.44645 -16.28727 -15.69614 -15.45952 -15.08451 -14.76523 -14.66628 -14.35285 -14.04103 -13.84464 -13.57709 -13.54517 -13.31642 -13.00276 -12.88893 -12.80707 -12.67324 -12.56717 -12.41365 -12.17002 -11.94856 -11.89464 -11.51045 -11.40220 -11.18928 -11.13021 -10.89000 -10.69428 -10.37632 -9.60739 -9.36799 -8.69262 -8.54690 -6.35440 0.95394 1.07106 1.35332 1.48130 1.51227 1.73250 2.21877 2.32417 2.60613 2.76796 2.96113 3.10336 3.76632 3.81713 3.90831 4.03657 4.20448 4.22255 4.26644 4.31524 4.43660 4.47978 4.50922 4.56834 4.65208 4.66570 4.69182 4.71702 4.87241 4.93506 4.94866 5.08126 5.13170 5.15489 5.16733 5.19948 5.23082 5.35336 5.62625 5.78457 5.86255 6.05847 6.12927 6.17620 6.40087 6.44660 6.71100 6.96329 7.03108 7.08993 7.73971 8.34961 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011296 B = 0.003625 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2478.176540 B = 7721.465959 C = 8521.853573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.130 3.870 4 C 0.041 3.959 5 O -0.402 6.402 6 C 0.097 3.903 7 C -0.179 4.179 8 C -0.182 4.182 9 C -0.148 4.148 10 C 0.695 3.305 11 O -0.601 6.601 12 N -0.676 5.676 13 C 0.181 3.819 14 C -0.255 4.255 15 C -0.089 4.089 16 C -0.200 4.200 17 C 0.091 3.909 18 C -0.504 4.504 19 H 0.058 0.942 20 C 0.040 3.960 21 N -0.822 5.822 22 Si 0.980 3.020 23 H -0.268 1.268 24 H -0.257 1.257 25 H -0.260 1.260 26 C -0.236 4.236 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.137 0.863 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.412 0.588 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.105 0.895 45 H 0.289 0.711 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 16.952 10.198 22.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.366 5.366 3 C 0.007 3.993 4 C -0.036 4.036 5 O -0.322 6.322 6 C 0.021 3.979 7 C -0.198 4.198 8 C -0.219 4.219 9 C -0.185 4.185 10 C 0.396 3.604 11 O -0.479 6.479 12 N -0.326 5.326 13 C 0.087 3.913 14 C -0.276 4.276 15 C -0.108 4.108 16 C -0.220 4.220 17 C 0.088 3.912 18 C -0.534 4.534 19 H 0.077 0.923 20 C -0.175 4.175 21 N -0.448 5.448 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.182 1.182 25 H -0.184 1.184 26 C -0.258 4.258 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.155 0.845 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.251 0.749 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.122 0.878 45 H 0.100 0.900 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.821 16.638 9.997 21.321 hybrid contribution 0.423 -0.243 -0.419 0.643 sum -8.398 16.396 9.578 20.762 Atomic orbital electron populations 1.22016 0.77266 1.04563 1.03071 1.47028 1.07721 1.03744 1.78059 1.21599 0.97639 0.84377 0.95650 1.23150 0.93939 0.92583 0.93965 1.88185 1.68051 1.50503 1.25472 1.22004 0.96938 0.96276 0.82679 1.22127 1.03245 1.02497 0.91898 1.23086 0.99926 0.96959 1.01973 1.23049 0.99058 1.00946 0.95430 1.16119 0.85113 0.81286 0.77850 1.90955 1.13715 1.86203 1.56982 1.42543 1.10127 1.03038 1.76898 1.17301 0.93564 0.84817 0.95652 1.20410 1.05494 0.92676 1.09017 1.20807 0.95022 0.96933 0.98020 1.21267 0.99722 0.99068 1.01967 1.17819 0.91897 0.91355 0.90084 1.19735 1.08237 0.95478 1.29909 0.92342 1.26668 1.02863 0.94272 0.93712 1.69862 1.36397 1.04179 1.34371 0.85203 0.76798 0.79156 0.78759 1.19211 1.18153 1.18399 1.20914 0.99803 0.97912 1.07192 0.91343 0.91353 0.87654 0.84485 0.92514 0.91582 0.90419 0.92371 0.91711 0.90761 0.87557 0.89835 0.88055 0.86302 0.74907 0.85364 0.85835 0.87753 0.90008 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.25 127.77 1.31 2.43 16 2 N -0.63 -16.92 2.86 -864.90 -2.47 -19.39 16 3 C 0.13 2.95 5.86 86.38 0.51 3.46 16 4 C 0.04 0.85 6.28 71.98 0.45 1.30 16 5 O -0.40 -12.71 9.12 -141.53 -1.29 -14.00 16 6 C 0.10 2.38 6.22 71.98 0.45 2.82 16 7 C -0.18 -4.99 6.06 -10.79 -0.07 -5.05 16 8 C -0.18 -4.40 10.18 30.60 0.31 -4.09 16 9 C -0.15 -2.94 10.25 30.60 0.31 -2.62 16 10 C 0.69 27.82 7.63 179.06 1.37 29.19 16 11 O -0.60 -31.08 12.89 3.45 0.04 -31.03 16 12 N -0.68 -26.14 5.22 -317.33 -1.66 -27.79 16 13 C 0.18 8.82 6.25 38.09 0.24 9.05 16 14 C -0.25 -11.43 9.97 22.58 0.23 -11.20 16 15 C -0.09 -4.28 10.02 22.20 0.22 -4.06 16 16 C -0.20 -11.30 8.69 22.75 0.20 -11.10 16 17 C 0.09 5.54 5.57 -21.31 -0.12 5.42 16 18 C -0.50 -30.76 9.05 23.46 0.21 -30.55 16 19 H 0.06 3.63 7.90 -2.91 -0.02 3.61 16 20 C 0.04 2.16 5.16 85.25 0.44 2.60 16 21 N -0.82 -45.31 10.94 21.82 0.24 -45.08 16 22 Si 0.98 41.72 29.59 68.60 2.03 43.75 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 26 C -0.24 -13.69 8.39 22.85 0.19 -13.50 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.07 1.02 6.29 -2.39 -0.02 1.01 16 29 H 0.10 0.91 8.07 -2.39 -0.02 0.89 16 30 H 0.14 1.71 8.07 -2.39 -0.02 1.69 16 31 H 0.06 1.73 7.42 -2.39 -0.02 1.71 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.19 7.87 -2.39 -0.02 1.17 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.11 2.20 8.03 -2.39 -0.02 2.18 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.41 12.00 6.51 -92.70 -0.60 11.39 16 42 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 44 H 0.10 6.05 6.17 -2.91 -0.02 6.04 16 45 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 46 H 0.08 4.90 6.49 -2.91 -0.02 4.89 16 Total: -1.00 -82.53 380.12 3.52 -79.01 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: 0.38 Total: 40.42 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 6.25 Total: -25.88 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -3.89 Total: -92.26 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.25 Total: -45.04 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -82.53 3.52 -79.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455925276.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.836 kcal (2) G-P(sol) polarization free energy of solvation -82.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds