Wall clock time and date at job start Tue Mar 31 2020 12:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34774 * 120.00023 * 2 1 4 4 O 1.21592 * 119.99764 * 185.17092 * 3 2 1 5 5 N 1.34770 * 120.00418 * 5.17000 * 3 2 1 6 6 C 1.46497 * 120.00284 * 185.09019 * 5 3 2 7 7 C 1.52998 * 109.47143 * 184.58446 * 6 5 3 8 8 C 1.50705 * 115.54936 * 54.88271 * 7 6 5 9 9 H 1.07998 * 119.99864 * 208.30026 * 8 7 6 10 10 C 1.37872 * 119.99633 * 28.03011 * 8 7 6 11 11 N 1.31518 * 120.00582 * 3.91332 * 10 8 7 12 12 Si 1.86809 * 119.99646 * 183.91449 * 10 8 7 13 13 H 1.48501 * 109.46885 * 90.00278 * 12 10 8 14 14 H 1.48503 * 109.46754 * 209.99610 * 12 10 8 15 15 H 1.48488 * 109.47022 * 329.99559 * 12 10 8 16 16 C 1.53006 * 117.49979 * 200.55124 * 7 6 5 17 17 C 1.53004 * 117.50274 * 269.21047 * 7 6 5 18 18 C 1.46497 * 119.99644 * 179.97438 * 2 1 3 19 19 H 1.09010 * 109.47164 * 174.04654 * 18 2 1 20 20 C 1.53000 * 109.47545 * 54.04901 * 18 2 1 21 21 O 1.42901 * 109.46623 * 292.69268 * 20 18 2 22 22 C 1.50696 * 109.47307 * 294.04472 * 18 2 1 23 23 C 1.38233 * 120.00107 * 48.44528 * 22 18 2 24 24 C 1.38232 * 120.00293 * 179.78789 * 23 22 18 25 25 C 1.38232 * 119.99809 * 0.43930 * 24 23 22 26 26 C 1.38233 * 120.00114 * 359.81619 * 25 24 23 27 27 C 1.38232 * 120.00251 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47119 * 24.73871 * 1 2 3 29 29 H 1.08996 * 109.47626 * 144.73823 * 1 2 3 30 30 H 1.09008 * 109.47371 * 264.73852 * 1 2 3 31 31 H 0.97001 * 119.99706 * 5.08301 * 5 3 2 32 32 H 1.09005 * 109.47516 * 64.58666 * 6 5 3 33 33 H 1.08997 * 109.47279 * 304.58408 * 6 5 3 34 34 H 0.96992 * 120.00286 * 184.97806 * 11 10 8 35 35 H 1.08999 * 117.49710 * 215.00471 * 16 7 6 36 36 H 1.09003 * 117.49708 * 0.02562 * 16 7 6 37 37 H 1.09001 * 117.49429 * 359.97438 * 17 7 6 38 38 H 1.09001 * 117.50026 * 144.97224 * 17 7 6 39 39 H 1.08999 * 109.46736 * 52.68843 * 20 18 2 40 40 H 1.08997 * 109.47356 * 172.68987 * 20 18 2 41 41 H 0.96702 * 113.99812 * 180.02562 * 21 20 18 42 42 H 1.08003 * 119.99809 * 0.02562 * 23 22 18 43 43 H 1.08001 * 119.99956 * 180.27165 * 24 23 22 44 44 H 1.08000 * 119.99967 * 179.83246 * 25 24 23 45 45 H 1.08003 * 120.00008 * 180.02562 * 26 25 24 46 46 H 1.07995 * 120.00497 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3510 1.1693 -0.0949 5 7 1.4691 2.3320 0.1052 6 6 2.1886 3.6032 -0.0067 7 6 1.2241 4.7603 0.2612 8 6 0.4800 4.6965 1.5702 9 1 -0.4941 5.1540 1.6605 10 6 1.0406 4.0492 2.6508 11 7 2.2560 3.5545 2.5632 12 14 0.0735 3.8748 4.2396 13 1 -0.7099 2.6137 4.2063 14 1 1.0125 3.8440 5.3897 15 1 -0.8504 5.0280 4.3857 16 6 1.6179 6.1436 -0.2608 17 6 0.4907 5.3614 -0.9396 18 6 2.1973 -1.2687 0.0006 19 1 3.2643 -1.0725 -0.1061 20 6 1.7189 -2.1344 -1.1667 21 8 0.3654 -2.5332 -0.9405 22 6 1.9471 -1.9927 1.2984 23 6 0.6561 -2.1393 1.7703 24 6 0.4262 -2.8071 2.9585 25 6 1.4881 -3.3205 3.6795 26 6 2.7795 -3.1693 3.2103 27 6 3.0091 -2.5052 2.0199 28 1 -0.3633 0.9334 -0.4301 29 1 -0.3634 -0.8391 -0.5932 30 1 -0.3634 -0.0942 1.0234 31 1 0.5108 2.3286 0.2548 32 1 2.6018 3.6998 -1.0108 33 1 2.9977 3.6283 0.7231 34 1 2.6230 3.0369 3.2967 35 1 1.3388 7.0074 0.3426 36 1 2.5639 6.2292 -0.7955 37 1 0.6958 4.9327 -1.9206 38 1 -0.5300 5.7102 -0.7829 39 1 1.7792 -1.5618 -2.0922 40 1 2.3502 -3.0195 -1.2453 41 1 -0.0042 -3.0862 -1.6424 42 1 -0.1732 -1.7354 1.2086 43 1 -0.5828 -2.9255 3.3250 44 1 1.3087 -3.8399 4.6092 45 1 3.6091 -3.5707 3.7734 46 1 4.0180 -2.3874 1.6530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458717953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:24 Heat of formation + Delta-G solvation = -20.152827 kcal Electronic energy + Delta-G solvation = -28014.219304 eV Core-core repulsion = 24290.999780 eV Total energy + Delta-G solvation = -3723.219523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.44408 -40.00520 -38.60257 -37.91732 -35.95049 -34.83853 -34.11373 -32.61869 -31.69885 -29.64181 -27.98028 -27.50237 -26.69516 -24.20767 -23.37479 -22.95425 -22.01198 -21.07635 -20.47167 -19.29644 -18.37897 -17.82571 -17.79111 -17.17865 -16.79483 -16.50205 -16.02875 -15.83931 -15.64948 -15.41901 -15.18651 -14.69515 -14.48859 -14.29383 -14.11274 -13.60738 -13.50693 -13.43857 -13.41965 -13.26322 -12.90960 -12.84573 -12.57251 -12.47263 -12.28274 -12.04991 -11.99726 -11.78931 -11.47557 -11.10655 -10.98034 -10.68393 -10.60920 -10.12594 -9.80569 -9.74368 -9.60392 -9.22501 -7.90485 -6.17340 0.44420 0.57479 1.38210 1.42720 1.50255 1.90017 2.39325 2.43139 2.91996 3.01845 3.39608 3.42822 3.70761 3.74532 3.98136 4.13087 4.21579 4.28537 4.30103 4.40585 4.45240 4.55839 4.58730 4.61448 4.72494 4.77297 4.78624 4.83729 4.85757 4.97939 5.11223 5.13481 5.17353 5.23873 5.29800 5.55097 5.59748 5.61886 5.63175 5.67506 5.79078 6.00537 6.04086 6.16636 6.20202 6.39506 6.82829 6.97972 7.31710 7.46510 7.86558 8.91406 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.004917 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.876263 B = 5692.729585 C = 6807.833255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.621 5.621 3 C 0.696 3.304 4 O -0.647 6.647 5 N -0.694 5.694 6 C 0.196 3.804 7 C 0.007 3.993 8 C -0.501 4.501 9 H 0.057 0.943 10 C 0.037 3.963 11 N -0.881 5.881 12 Si 0.941 3.059 13 H -0.275 1.275 14 H -0.296 1.296 15 H -0.267 1.267 16 C -0.201 4.201 17 C -0.185 4.185 18 C 0.194 3.806 19 H 0.092 0.908 20 C 0.087 3.913 21 O -0.566 6.566 22 C -0.103 4.103 23 C -0.102 4.102 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.134 4.134 27 C -0.129 4.129 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.043 0.957 31 H 0.397 0.603 32 H 0.011 0.989 33 H 0.076 0.924 34 H 0.251 0.749 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.395 0.605 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.494 -16.241 -5.193 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.358 5.358 3 C 0.398 3.602 4 O -0.531 6.531 5 N -0.345 5.345 6 C 0.071 3.929 7 C 0.006 3.994 8 C -0.538 4.538 9 H 0.076 0.924 10 C -0.165 4.165 11 N -0.517 5.517 12 Si 0.768 3.232 13 H -0.201 1.201 14 H -0.223 1.223 15 H -0.192 1.192 16 C -0.239 4.239 17 C -0.222 4.222 18 C 0.089 3.911 19 H 0.110 0.890 20 C 0.009 3.991 21 O -0.375 6.375 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.158 4.158 25 C -0.146 4.146 26 C -0.152 4.152 27 C -0.148 4.148 28 H 0.080 0.920 29 H 0.145 0.855 30 H 0.062 0.938 31 H 0.233 0.767 32 H 0.029 0.971 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.160 0.840 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.157 0.843 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.401 -15.888 -4.619 17.121 hybrid contribution -0.484 0.034 0.679 0.834 sum -4.885 -15.855 -3.940 17.052 Atomic orbital electron populations 1.22377 0.78606 1.04714 1.02071 1.46920 1.07136 1.03285 1.78414 1.16137 0.84818 0.81399 0.77869 1.90759 1.13985 1.86994 1.61348 1.44728 1.11213 1.03863 1.74690 1.20529 0.95494 0.80770 0.96072 1.19300 0.97051 0.90306 0.92742 1.20671 1.02752 1.36316 0.94088 0.92444 1.25542 0.95016 0.95315 1.00639 1.70106 1.14927 1.34510 1.32167 0.85809 0.78570 0.78659 0.80172 1.20079 1.22271 1.19157 1.22960 0.98195 0.97601 1.05159 1.22947 0.96232 1.06166 0.96892 1.19960 0.96952 0.81483 0.92679 0.89001 1.22286 0.84383 0.97197 0.95258 1.86447 1.26585 1.72854 1.51649 1.20159 0.94338 0.99042 0.96927 1.21604 0.97059 0.97188 0.96097 1.21484 1.00062 0.98765 0.95455 1.21457 0.92680 1.00020 1.00397 1.21342 0.97942 0.99759 0.96109 1.21259 0.98651 0.98931 0.95933 0.91989 0.85486 0.93821 0.76706 0.97105 0.90590 0.93909 0.90430 0.90583 0.89727 0.89731 0.92512 0.90645 0.75365 0.83990 0.84520 0.84079 0.84348 0.86112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.83 8.00 127.77 1.02 2.86 16 2 N -0.62 -21.88 2.74 -844.87 -2.31 -24.20 16 3 C 0.70 31.61 8.26 179.06 1.48 33.09 16 4 O -0.65 -34.24 15.67 -4.00 -0.06 -34.30 16 5 N -0.69 -31.65 4.51 -478.55 -2.16 -33.81 16 6 C 0.20 9.76 4.59 86.38 0.40 10.16 16 7 C 0.01 0.32 2.08 -52.92 -0.11 0.21 16 8 C -0.50 -25.74 8.55 25.60 0.22 -25.52 16 9 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 10 C 0.04 1.94 5.12 84.65 0.43 2.38 16 11 N -0.88 -49.76 9.87 21.45 0.21 -49.55 16 12 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 15 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 16 C -0.20 -8.65 9.96 30.62 0.30 -8.35 16 17 C -0.19 -7.40 9.93 30.62 0.30 -7.09 16 18 C 0.19 5.92 2.92 44.24 0.13 6.05 16 19 H 0.09 3.25 6.69 -2.38 -0.02 3.23 16 20 C 0.09 1.80 6.68 71.98 0.48 2.28 16 21 O -0.57 -9.48 8.44 -148.98 -1.26 -10.74 16 22 C -0.10 -3.12 4.89 -19.87 -0.10 -3.21 16 23 C -0.10 -2.86 7.49 22.27 0.17 -2.69 16 24 C -0.14 -3.53 10.05 22.27 0.22 -3.31 16 25 C -0.13 -3.05 10.05 22.27 0.22 -2.82 16 26 C -0.13 -3.38 10.05 22.27 0.22 -3.16 16 27 C -0.13 -3.75 9.67 22.27 0.22 -3.53 16 28 H 0.06 1.78 6.39 -2.39 -0.02 1.76 16 29 H 0.13 2.90 4.68 -2.39 -0.01 2.88 16 30 H 0.04 1.31 6.32 -2.38 -0.02 1.29 16 31 H 0.40 17.19 5.98 -92.71 -0.55 16.64 16 32 H 0.01 0.53 8.09 -2.38 -0.02 0.51 16 33 H 0.08 4.45 5.89 -2.39 -0.01 4.43 16 34 H 0.25 14.31 8.32 -92.71 -0.77 13.54 16 35 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 38 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.40 2.77 9.12 -74.06 -0.68 2.10 16 42 H 0.14 3.76 3.92 -2.91 -0.01 3.75 16 43 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.14 2.55 8.06 -2.91 -0.02 2.53 16 45 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 46 H 0.12 3.31 7.98 -2.91 -0.02 3.29 16 Total: -1.00 -68.49 364.58 1.85 -66.64 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: -0.22 Total: 43.89 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: 5.62 Total: -2.67 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.26 Total: -107.56 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.32 Total: -45.04 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -68.49 1.85 -66.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458717953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.489 kcal (2) G-P(sol) polarization free energy of solvation -68.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds