Wall clock time and date at job start Tue Mar 31 2020 12:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 114.00364 * 2 1 4 4 C 1.52990 * 109.47514 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47046 * 64.99858 * 4 3 2 6 6 C 1.36942 * 120.00374 * 270.00073 * 5 4 3 7 7 H 1.08001 * 119.99479 * 29.22203 * 6 5 4 8 8 C 1.38808 * 120.00056 * 209.22034 * 6 5 4 9 9 N 1.31621 * 120.00201 * 353.07876 * 8 6 5 10 10 Si 1.86804 * 119.99873 * 173.07982 * 8 6 5 11 11 H 1.48496 * 109.47260 * 59.99903 * 10 8 6 12 12 H 1.48498 * 109.47266 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46605 * 299.99776 * 10 8 6 14 14 C 1.46502 * 120.00022 * 89.99924 * 5 4 3 15 15 C 1.50707 * 109.46800 * 83.94824 * 14 5 4 16 16 O 1.21284 * 120.00162 * 0.02562 * 15 14 5 17 17 N 1.34782 * 119.99861 * 180.27339 * 15 14 5 18 18 C 1.39919 * 120.00121 * 174.76840 * 17 15 14 19 19 C 1.38887 * 120.10519 * 35.21571 * 18 17 15 20 20 C 1.37977 * 119.86362 * 179.97438 * 19 18 17 21 21 C 1.38567 * 120.30774 * 0.02562 * 20 19 18 22 22 C 1.38281 * 119.95948 * 359.97438 * 21 20 19 23 23 C 1.38386 * 119.92253 * 359.74720 * 22 21 20 24 24 C 1.51385 * 109.75183 * 180.02562 * 22 21 20 25 25 C 1.54344 * 105.17149 * 342.79756 * 24 22 21 26 26 C 1.51393 * 130.30547 * 180.02562 * 21 20 19 27 27 H 1.09003 * 109.47263 * 300.00444 * 1 2 3 28 28 H 1.09004 * 109.47067 * 60.00031 * 1 2 3 29 29 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46682 * 59.99596 * 3 2 1 31 31 H 1.09001 * 109.47337 * 300.00348 * 3 2 1 32 32 H 1.09001 * 109.47163 * 305.00167 * 4 3 2 33 33 H 1.09000 * 109.47194 * 185.00117 * 4 3 2 34 34 H 0.97001 * 119.99958 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47165 * 323.95086 * 14 5 4 36 36 H 1.08995 * 109.47386 * 203.95051 * 14 5 4 37 37 H 0.97002 * 119.99748 * 354.77468 * 17 15 14 38 38 H 1.08007 * 120.07238 * 359.97438 * 19 18 17 39 39 H 1.07997 * 119.84323 * 179.97438 * 20 19 18 40 40 H 1.07995 * 119.91484 * 180.25150 * 23 22 21 41 41 H 1.08994 * 110.30594 * 223.87392 * 24 22 21 42 42 H 1.08993 * 110.38693 * 101.76235 * 24 22 21 43 43 H 1.09001 * 110.82059 * 268.15035 * 25 24 22 44 44 H 1.08994 * 110.98976 * 144.68001 * 25 24 22 45 45 H 1.09009 * 110.29501 * 316.11786 * 26 21 20 46 46 H 1.08995 * 110.30426 * 78.26564 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2508 6 6 4.0978 -0.7976 -1.3344 7 1 3.4692 -1.4338 -0.7291 8 6 5.0284 -1.3599 -2.1973 9 7 5.6980 -0.5943 -3.0327 10 14 5.3306 -3.2032 -2.1727 11 1 4.0679 -3.9160 -2.4930 12 1 6.3642 -3.5488 -3.1813 13 1 5.8003 -3.6098 -0.8239 14 6 4.2882 1.3997 -2.4130 15 6 5.7049 1.9022 -2.3049 16 8 6.3872 1.5923 -1.3513 17 7 6.2120 2.7001 -3.2655 18 6 7.4872 3.2554 -3.1127 19 6 8.4902 2.5333 -2.4791 20 6 9.7460 3.0855 -2.3316 21 6 10.0113 4.3577 -2.8123 22 6 9.0147 5.0791 -3.4436 23 6 7.7554 4.5268 -3.5988 24 6 9.5530 6.4273 -3.8733 25 6 10.8469 6.6249 -3.0554 26 6 11.2869 5.1722 -2.7754 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8507 0.5684 0.8427 33 1 3.9784 2.1765 0.0902 34 1 6.3487 -0.9872 -3.6354 35 1 3.6035 2.2472 -2.4451 36 1 4.1801 0.8106 -3.3237 37 1 5.6929 2.8895 -4.0627 38 1 8.2876 1.5414 -2.1025 39 1 10.5255 2.5238 -1.8385 40 1 6.9783 5.0888 -4.0954 41 1 8.8345 7.2131 -3.6402 42 1 9.7766 6.4243 -4.9400 43 1 10.6401 7.1536 -2.1249 44 1 11.6011 7.1523 -3.6393 45 1 11.7529 5.1007 -1.7925 46 1 11.9763 4.8306 -3.5474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459544107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:29 Heat of formation + Delta-G solvation = -26.092861 kcal Electronic energy + Delta-G solvation = -26920.697583 eV Core-core repulsion = 23197.220481 eV Total energy + Delta-G solvation = -3723.477102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.00446 -38.51606 -37.33367 -35.77592 -34.65825 -33.02777 -31.51746 -30.81404 -29.07814 -28.04766 -27.16807 -26.08259 -25.78746 -23.27447 -22.33275 -21.42689 -20.65923 -20.25072 -19.02596 -17.14735 -16.38314 -15.97869 -15.84140 -15.54542 -15.45884 -15.13944 -14.77134 -14.52030 -14.28246 -13.73506 -13.42824 -13.15154 -12.96504 -12.90561 -12.79897 -12.48738 -12.28610 -12.03924 -11.77823 -11.41740 -11.24539 -11.14751 -11.10158 -10.97197 -10.88487 -10.79516 -10.48366 -10.43964 -10.26251 -9.98464 -9.94300 -9.29721 -9.04776 -8.74159 -8.37806 -8.21467 -7.30703 -6.69392 -5.79652 -3.20458 1.77085 1.82807 3.45014 3.49913 3.52696 3.91548 4.02946 4.34876 4.45831 4.56508 4.65218 4.69845 4.97943 5.32345 5.35333 5.40681 5.43742 5.49083 5.60904 5.68563 5.70372 5.72348 5.80542 5.82263 5.85538 5.92200 5.99401 6.03257 6.10012 6.11493 6.18349 6.20761 6.36901 6.44146 6.47206 6.65840 6.81043 6.92963 7.01198 7.04711 7.19729 7.22827 7.73840 7.82691 7.94383 8.35969 8.52111 9.24075 9.55948 9.84871 10.33603 11.31155 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.003415 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.913239 B = 8197.574576 C = 9376.640078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.150 3.850 5 N -0.565 5.565 6 C -0.234 4.234 7 H 0.079 0.921 8 C 0.007 3.993 9 N -0.914 5.914 10 Si 0.909 3.091 11 H -0.285 1.285 12 H -0.293 1.293 13 H -0.285 1.285 14 C 0.166 3.834 15 C 0.528 3.472 16 O -0.516 6.516 17 N -0.690 5.690 18 C 0.176 3.824 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.136 4.136 22 C -0.087 4.087 23 C -0.152 4.152 24 C -0.077 4.077 25 C -0.120 4.120 26 C -0.076 4.076 27 H 0.028 0.972 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.254 0.746 35 H 0.028 0.972 36 H 0.116 0.884 37 H 0.399 0.601 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 13.184 -2.040 13.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C -0.036 4.036 4 C 0.022 3.978 5 N -0.283 5.283 6 C -0.364 4.364 7 H 0.097 0.903 8 C -0.189 4.189 9 N -0.560 5.560 10 Si 0.740 3.260 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.211 1.211 14 C 0.036 3.964 15 C 0.316 3.684 16 O -0.389 6.389 17 N -0.336 5.336 18 C 0.079 3.921 19 C -0.139 4.139 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.088 4.088 23 C -0.173 4.173 24 C -0.114 4.114 25 C -0.157 4.157 26 C -0.113 4.113 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.134 0.866 37 H 0.233 0.767 38 H 0.165 0.835 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.434 12.625 -1.391 12.932 hybrid contribution -0.161 -0.727 -0.537 0.918 sum 2.273 11.898 -1.928 12.266 Atomic orbital electron populations 1.22638 0.83421 1.01762 0.98710 1.88098 1.17441 1.27903 1.94978 1.23434 0.98033 0.84325 0.97786 1.20829 0.89113 0.97163 0.90649 1.43510 1.75921 1.02981 1.05927 1.19284 1.13482 0.81421 1.22165 0.90283 1.25085 0.96492 0.98065 0.99294 1.69611 1.28475 1.33892 1.24047 0.86256 0.77336 0.85186 0.77227 1.21170 1.21935 1.21126 1.20578 0.87835 0.93081 0.94932 1.22512 0.92159 0.73690 0.80053 1.90497 1.61106 1.53749 1.33514 1.44077 1.15035 1.50799 1.23653 1.17754 0.85927 0.91135 0.97246 1.21413 0.90823 1.01371 1.00274 1.20510 0.96660 0.94184 0.99690 1.20387 0.95897 0.95274 1.02104 1.20176 0.93314 0.96189 0.99110 1.20257 0.96636 0.94116 1.06322 1.20969 0.96609 0.94028 0.99809 1.22270 0.96868 0.96486 1.00126 1.20937 0.95084 0.93566 1.01675 0.95339 0.94924 0.90484 0.95098 0.94437 0.92283 0.92900 0.93519 0.95447 0.86605 0.76702 0.83521 0.86775 0.86641 0.91191 0.90685 0.91226 0.91012 0.91346 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.37 -7.19 9.83 -35.23 -0.35 -7.53 16 3 C 0.04 0.79 6.28 37.15 0.23 1.02 16 4 C 0.15 3.18 6.06 -4.05 -0.02 3.15 16 5 N -0.56 -13.83 2.01 -174.61 -0.35 -14.18 16 6 C -0.23 -6.38 9.20 -15.06 -0.14 -6.52 16 7 H 0.08 2.20 7.41 -52.49 -0.39 1.81 16 8 C 0.01 0.20 5.37 -17.43 -0.09 0.10 16 9 N -0.91 -25.10 8.63 55.49 0.48 -24.62 16 10 Si 0.91 22.35 29.56 -169.99 -5.02 17.33 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 14 C 0.17 3.73 5.37 -5.19 -0.03 3.70 16 15 C 0.53 12.03 5.78 -10.98 -0.06 11.97 16 16 O -0.52 -13.74 13.56 5.55 0.08 -13.66 16 17 N -0.69 -13.09 5.34 -9.89 -0.05 -13.15 16 18 C 0.18 3.30 6.29 -83.74 -0.53 2.78 16 19 C -0.12 -2.39 8.70 -39.44 -0.34 -2.73 16 20 C -0.09 -1.57 10.03 -39.56 -0.40 -1.97 16 21 C -0.14 -2.04 6.14 -104.14 -0.64 -2.68 16 22 C -0.09 -1.27 6.13 -104.22 -0.64 -1.91 16 23 C -0.15 -2.40 9.96 -39.34 -0.39 -2.79 16 24 C -0.08 -0.84 6.77 -26.84 -0.18 -1.02 16 25 C -0.12 -1.16 7.08 -25.32 -0.18 -1.34 16 26 C -0.08 -0.86 6.77 -26.84 -0.18 -1.04 16 27 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 33 H 0.05 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.12 2.80 6.41 -51.93 -0.33 2.47 16 37 H 0.40 6.29 8.82 -40.82 -0.36 5.93 16 38 H 0.15 3.50 6.23 -52.48 -0.33 3.17 16 39 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -32.01 374.29 -9.36 -41.37 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.30 Total: 6.52 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.48 Total: 2.29 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.08 Total: -51.95 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.27 Total: -21.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.01 -9.36 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459544107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.274 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds