Wall clock time and date at job start Tue Mar 31 2020 12:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99844 * 2 1 4 4 C 1.52998 * 109.46781 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47143 * 65.00008 * 4 3 2 6 6 C 1.36940 * 119.99819 * 274.20984 * 5 4 3 7 7 H 1.08007 * 119.99767 * 337.87684 * 6 5 4 8 8 C 1.38806 * 120.00020 * 157.86892 * 6 5 4 9 9 N 1.31620 * 120.00172 * 7.57965 * 8 6 5 10 10 Si 1.86800 * 120.00127 * 187.57852 * 8 6 5 11 11 H 1.48497 * 109.47087 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46972 * 119.99884 * 10 8 6 13 13 H 1.48496 * 109.47159 * 240.00226 * 10 8 6 14 14 C 1.46495 * 120.00361 * 94.21206 * 5 4 3 15 15 C 1.50697 * 109.47146 * 269.99939 * 14 5 4 16 16 O 1.21279 * 120.00059 * 0.02562 * 15 14 5 17 17 N 1.34776 * 119.99928 * 179.97438 * 15 14 5 18 18 C 1.47235 * 121.33731 * 179.97438 * 17 15 14 19 19 C 1.52793 * 107.90047 * 115.75879 * 18 17 15 20 20 C 1.50603 * 110.85140 * 47.47674 * 19 18 17 21 21 C 1.38976 * 117.61125 * 160.55253 * 20 19 18 22 22 C 1.37918 * 120.58112 * 179.55685 * 21 20 19 23 23 C 1.38263 * 119.82083 * 359.56424 * 22 21 20 24 24 C 1.37950 * 119.72233 * 0.45487 * 23 22 21 25 25 C 1.37667 * 122.86577 * 339.97629 * 20 19 18 26 26 C 1.46680 * 121.33997 * 0.02562 * 17 15 14 27 27 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47449 * 300.00476 * 1 2 3 29 29 H 1.09001 * 109.47170 * 60.00431 * 1 2 3 30 30 H 1.08990 * 109.47128 * 59.99549 * 3 2 1 31 31 H 1.09004 * 109.46950 * 299.99734 * 3 2 1 32 32 H 1.08990 * 109.47351 * 304.99604 * 4 3 2 33 33 H 1.09006 * 109.47030 * 184.99294 * 4 3 2 34 34 H 0.96997 * 120.00026 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47199 * 149.99841 * 14 5 4 36 36 H 1.09004 * 109.47365 * 29.99890 * 14 5 4 37 37 H 1.09003 * 109.77506 * 235.35924 * 18 17 15 38 38 H 1.09001 * 109.77567 * 356.15527 * 18 17 15 39 39 H 1.09002 * 109.20349 * 167.83205 * 19 18 17 40 40 H 1.09004 * 109.19577 * 287.17075 * 19 18 17 41 41 H 1.08004 * 119.71157 * 359.30574 * 21 20 19 42 42 H 1.07996 * 120.08894 * 179.83755 * 22 21 20 43 43 H 1.08000 * 120.13669 * 180.47762 * 23 22 21 44 44 H 1.08004 * 119.75152 * 179.81973 * 24 23 22 45 45 H 1.08994 * 109.43656 * 104.26718 * 26 17 15 46 46 H 1.08997 * 109.40578 * 344.36924 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0152 -0.8004 -1.3621 7 1 4.0753 -1.4131 -0.4747 8 6 3.9768 -1.3960 -2.6154 9 7 4.0539 -0.6536 -3.6995 10 14 3.8157 -3.2511 -2.7634 11 1 3.7473 -3.8518 -1.4070 12 1 2.5777 -3.5821 -3.5137 13 1 4.9932 -3.7941 -3.4870 14 6 4.3767 1.4027 -2.3834 15 6 3.1740 1.6910 -3.2445 16 8 2.0894 1.2406 -2.9417 17 7 3.3035 2.4502 -4.3505 18 6 2.1485 2.7500 -5.2130 19 6 1.9032 4.2572 -5.1624 20 6 3.1892 5.0165 -5.3566 21 6 3.0989 6.3474 -5.7466 22 6 4.2376 7.1027 -5.9332 23 6 5.4809 6.5358 -5.7225 24 6 5.5737 5.2148 -5.3358 25 6 4.4282 4.4517 -5.1537 26 6 4.6009 3.0102 -4.7438 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5686 0.8426 33 1 3.9784 2.1766 0.0901 34 1 4.0275 -1.0698 -4.5752 35 1 5.1296 0.8808 -2.9740 36 1 4.7912 2.3401 -2.0127 37 1 2.3644 2.4457 -6.2372 38 1 1.2684 2.2206 -4.8481 39 1 1.2016 4.5329 -5.9498 40 1 1.4761 4.5185 -4.1941 41 1 2.1285 6.7930 -5.9088 42 1 4.1582 8.1355 -6.2388 43 1 6.3757 7.1248 -5.8597 44 1 6.5448 4.7707 -5.1739 45 1 5.0029 2.4404 -5.5814 46 1 5.2905 2.9527 -3.9017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459548364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:24 Heat of formation + Delta-G solvation = -12.727346 kcal Electronic energy + Delta-G solvation = -28173.486399 eV Core-core repulsion = 24450.588869 eV Total energy + Delta-G solvation = -3722.897530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.94611 -38.20177 -36.91418 -35.48645 -34.49744 -32.76668 -31.40032 -30.90823 -29.46856 -28.48407 -26.62218 -25.49201 -25.05284 -23.55664 -22.79239 -22.05941 -20.74944 -20.00206 -18.05329 -16.77070 -16.43442 -15.99133 -15.56703 -15.36256 -15.19469 -14.77409 -14.61069 -14.46950 -14.14109 -13.93076 -13.60693 -13.32710 -13.09059 -12.98412 -12.62871 -12.38269 -12.03984 -11.87554 -11.81411 -11.63304 -11.34231 -11.17608 -10.96896 -10.86358 -10.76608 -10.73881 -10.43736 -10.32845 -9.99804 -9.92019 -9.68560 -8.75091 -8.71200 -8.55521 -8.44760 -8.11858 -7.65789 -6.71679 -5.67663 -3.04913 1.43655 1.44953 3.48053 3.57034 3.58812 3.81701 3.93768 4.29217 4.64262 4.80956 4.86007 4.88838 5.02310 5.08857 5.31463 5.43621 5.50749 5.57057 5.63426 5.67805 5.72722 5.85422 5.89134 5.98913 6.05430 6.06921 6.11148 6.16871 6.22981 6.29944 6.32914 6.36862 6.39568 6.41150 6.50961 6.54971 6.58631 6.71481 6.83319 7.04273 7.08444 7.39006 7.46738 7.90807 8.19571 8.44998 8.64399 9.31306 9.78690 9.95234 10.37447 11.40402 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.004371 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.572956 B = 6404.833028 C = 7081.273788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.356 6.356 3 C 0.044 3.956 4 C 0.147 3.853 5 N -0.571 5.571 6 C -0.213 4.213 7 H 0.074 0.926 8 C 0.004 3.996 9 N -0.916 5.916 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.293 1.293 13 H -0.296 1.296 14 C 0.166 3.834 15 C 0.539 3.461 16 O -0.532 6.532 17 N -0.627 5.627 18 C 0.118 3.882 19 C -0.096 4.096 20 C -0.065 4.065 21 C -0.124 4.124 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.116 4.116 25 C -0.086 4.086 26 C 0.161 3.839 27 H 0.071 0.929 28 H 0.020 0.980 29 H 0.033 0.967 30 H 0.013 0.987 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.250 0.750 35 H 0.121 0.879 36 H 0.023 0.977 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.071 0.929 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.630 14.220 -3.113 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C -0.035 4.035 4 C 0.020 3.980 5 N -0.290 5.290 6 C -0.342 4.342 7 H 0.092 0.908 8 C -0.191 4.191 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.220 1.220 13 H -0.224 1.224 14 C 0.036 3.964 15 C 0.328 3.672 16 O -0.406 6.406 17 N -0.365 5.365 18 C -0.006 4.006 19 C -0.134 4.134 20 C -0.065 4.065 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.145 4.145 24 C -0.134 4.134 25 C -0.087 4.087 26 C 0.037 3.963 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.138 0.862 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.089 0.911 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.167 13.640 -2.992 13.965 hybrid contribution -0.648 -0.587 -0.568 1.043 sum -0.482 13.053 -3.559 13.538 Atomic orbital electron populations 1.22521 0.83902 1.01145 0.98289 1.88055 1.16982 1.27450 1.94856 1.23417 0.97436 0.84897 0.97783 1.21017 0.90265 0.96240 0.90451 1.43794 1.73905 1.02937 1.08398 1.19215 1.41186 0.81302 0.92455 0.90805 1.24837 1.00923 0.97834 0.95524 1.69627 1.56639 1.33119 0.97047 0.86099 0.76944 0.85603 0.77308 1.20573 1.22036 1.22370 1.20840 0.94365 0.92072 0.89130 1.22077 0.92192 0.73550 0.79333 1.90486 1.29259 1.49452 1.71359 1.48274 1.07120 1.53838 1.27259 1.21222 0.92013 0.92890 0.94513 1.20864 0.94112 0.96214 1.02173 1.19579 0.94595 0.93943 0.98358 1.21166 0.98424 0.93811 1.00842 1.20993 0.92779 0.99547 1.01210 1.21003 0.97424 0.95306 1.00724 1.21077 0.98027 0.94183 1.00137 1.20146 0.92668 0.96729 0.99128 1.20256 0.87255 0.88135 1.00693 0.91061 0.96140 0.94793 0.96904 0.92620 0.92968 0.92982 0.93899 0.86177 0.95954 0.92666 0.89254 0.90704 0.90632 0.86542 0.86537 0.86323 0.85865 0.91096 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 11.01 101.05 1.11 1.86 16 2 O -0.36 -8.39 9.98 -35.23 -0.35 -8.74 16 3 C 0.04 0.94 5.87 37.16 0.22 1.16 16 4 C 0.15 3.15 6.17 -4.04 -0.02 3.12 16 5 N -0.57 -14.17 2.06 -174.61 -0.36 -14.53 16 6 C -0.21 -5.85 9.00 -15.06 -0.14 -5.98 16 7 H 0.07 2.06 7.84 -52.48 -0.41 1.65 16 8 C 0.00 0.11 5.41 -17.43 -0.09 0.01 16 9 N -0.92 -25.41 8.21 55.49 0.46 -24.95 16 10 Si 0.91 22.92 29.56 -169.99 -5.02 17.89 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 13 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 14 C 0.17 3.80 3.89 -5.20 -0.02 3.78 16 15 C 0.54 12.54 5.67 -10.99 -0.06 12.48 16 16 O -0.53 -14.32 13.23 5.56 0.07 -14.25 16 17 N -0.63 -12.10 2.93 -174.36 -0.51 -12.61 16 18 C 0.12 2.03 6.44 -3.75 -0.02 2.01 16 19 C -0.10 -1.35 5.86 -28.04 -0.16 -1.51 16 20 C -0.06 -0.90 5.76 -104.60 -0.60 -1.50 16 21 C -0.12 -1.49 9.59 -39.43 -0.38 -1.87 16 22 C -0.13 -1.38 10.05 -39.69 -0.40 -1.78 16 23 C -0.13 -1.38 10.05 -39.68 -0.40 -1.78 16 24 C -0.12 -1.40 9.62 -39.46 -0.38 -1.78 16 25 C -0.09 -1.22 5.82 -104.53 -0.61 -1.83 16 26 C 0.16 2.57 6.09 -5.02 -0.03 2.54 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 1.31 6.03 -51.93 -0.31 1.00 16 32 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.05 0.96 7.84 -51.93 -0.41 0.55 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.12 2.97 6.22 -51.93 -0.32 2.64 16 36 H 0.02 0.45 7.30 -51.93 -0.38 0.08 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.09 1.73 7.07 -51.93 -0.37 1.37 16 39 H 0.07 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.17 8.05 -52.48 -0.42 0.75 16 42 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.26 8.05 -52.48 -0.42 0.84 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.09 1.43 6.19 -51.93 -0.32 1.11 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -32.67 365.80 -9.35 -42.02 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -7.15 Total: 0.74 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.99 Total: 8.92 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.42 Total: -52.10 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.28 Total: -22.99 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.67 -9.35 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459548364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.293 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds