Wall clock time and date at job start Tue Mar 31 2020 12:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99844 * 2 1 4 4 C 1.52998 * 109.46781 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47143 * 65.00008 * 4 3 2 6 6 C 1.36940 * 119.99819 * 274.20984 * 5 4 3 7 7 H 1.08007 * 119.99767 * 337.87684 * 6 5 4 8 8 C 1.38806 * 120.00020 * 157.86892 * 6 5 4 9 9 N 1.31620 * 120.00172 * 7.57965 * 8 6 5 10 10 Si 1.86800 * 120.00127 * 187.57852 * 8 6 5 11 11 H 1.48497 * 109.47087 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46972 * 119.99884 * 10 8 6 13 13 H 1.48496 * 109.47159 * 240.00226 * 10 8 6 14 14 C 1.46495 * 120.00361 * 94.21206 * 5 4 3 15 15 C 1.50697 * 109.47146 * 269.99939 * 14 5 4 16 16 O 1.21279 * 120.00059 * 0.02562 * 15 14 5 17 17 N 1.34776 * 119.99928 * 179.97438 * 15 14 5 18 18 C 1.47235 * 121.33731 * 179.97438 * 17 15 14 19 19 C 1.52793 * 107.90047 * 115.75879 * 18 17 15 20 20 C 1.50603 * 110.85140 * 47.47674 * 19 18 17 21 21 C 1.38976 * 117.61125 * 160.55253 * 20 19 18 22 22 C 1.37918 * 120.58112 * 179.55685 * 21 20 19 23 23 C 1.38263 * 119.82083 * 359.56424 * 22 21 20 24 24 C 1.37950 * 119.72233 * 0.45487 * 23 22 21 25 25 C 1.37667 * 122.86577 * 339.97629 * 20 19 18 26 26 C 1.46680 * 121.33997 * 0.02562 * 17 15 14 27 27 H 1.09003 * 109.47269 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47449 * 300.00476 * 1 2 3 29 29 H 1.09001 * 109.47170 * 60.00431 * 1 2 3 30 30 H 1.08990 * 109.47128 * 59.99549 * 3 2 1 31 31 H 1.09004 * 109.46950 * 299.99734 * 3 2 1 32 32 H 1.08990 * 109.47351 * 304.99604 * 4 3 2 33 33 H 1.09006 * 109.47030 * 184.99294 * 4 3 2 34 34 H 0.96997 * 120.00026 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47199 * 149.99841 * 14 5 4 36 36 H 1.09004 * 109.47365 * 29.99890 * 14 5 4 37 37 H 1.09003 * 109.77506 * 235.35924 * 18 17 15 38 38 H 1.09001 * 109.77567 * 356.15527 * 18 17 15 39 39 H 1.09002 * 109.20349 * 167.83205 * 19 18 17 40 40 H 1.09004 * 109.19577 * 287.17075 * 19 18 17 41 41 H 1.08004 * 119.71157 * 359.30574 * 21 20 19 42 42 H 1.07996 * 120.08894 * 179.83755 * 22 21 20 43 43 H 1.08000 * 120.13669 * 180.47762 * 23 22 21 44 44 H 1.08004 * 119.75152 * 179.81973 * 24 23 22 45 45 H 1.08994 * 109.43656 * 104.26718 * 26 17 15 46 46 H 1.08997 * 109.40578 * 344.36924 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.0152 -0.8004 -1.3621 7 1 4.0753 -1.4131 -0.4747 8 6 3.9768 -1.3960 -2.6154 9 7 4.0539 -0.6536 -3.6995 10 14 3.8157 -3.2511 -2.7634 11 1 3.7473 -3.8518 -1.4070 12 1 2.5777 -3.5821 -3.5137 13 1 4.9932 -3.7941 -3.4870 14 6 4.3767 1.4027 -2.3834 15 6 3.1740 1.6910 -3.2445 16 8 2.0894 1.2406 -2.9417 17 7 3.3035 2.4502 -4.3505 18 6 2.1485 2.7500 -5.2130 19 6 1.9032 4.2572 -5.1624 20 6 3.1892 5.0165 -5.3566 21 6 3.0989 6.3474 -5.7466 22 6 4.2376 7.1027 -5.9332 23 6 5.4809 6.5358 -5.7225 24 6 5.5737 5.2148 -5.3358 25 6 4.4282 4.4517 -5.1537 26 6 4.6009 3.0102 -4.7438 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 3.8507 0.5686 0.8426 33 1 3.9784 2.1766 0.0901 34 1 4.0275 -1.0698 -4.5752 35 1 5.1296 0.8808 -2.9740 36 1 4.7912 2.3401 -2.0127 37 1 2.3644 2.4457 -6.2372 38 1 1.2684 2.2206 -4.8481 39 1 1.2016 4.5329 -5.9498 40 1 1.4761 4.5185 -4.1941 41 1 2.1285 6.7930 -5.9088 42 1 4.1582 8.1355 -6.2388 43 1 6.3757 7.1248 -5.8597 44 1 6.5448 4.7707 -5.1739 45 1 5.0029 2.4404 -5.5814 46 1 5.2905 2.9527 -3.9017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459548364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:24 Heat of formation + Delta-G solvation = -31.596663 kcal Electronic energy + Delta-G solvation = -28174.304634 eV Core-core repulsion = 24450.588869 eV Total energy + Delta-G solvation = -3723.715765 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14697 -39.72766 -38.56982 -37.06011 -36.23250 -33.92163 -33.37821 -32.07165 -30.79445 -30.03861 -28.40131 -27.12618 -26.35061 -25.17778 -24.26107 -23.04064 -22.30692 -21.46803 -19.60064 -18.59971 -17.69923 -17.44484 -17.24311 -17.05529 -16.42544 -16.35929 -16.19926 -15.71551 -15.51349 -15.46378 -15.25813 -14.81254 -14.63877 -14.19081 -13.96492 -13.80827 -13.53593 -13.37862 -13.11874 -13.02769 -12.87351 -12.77501 -12.69785 -12.61100 -12.36561 -12.12314 -11.94988 -11.86883 -11.79807 -11.57617 -11.55958 -10.68262 -10.31056 -10.05343 -9.64095 -9.43324 -9.18928 -8.66467 -7.76624 -5.12948 0.50426 0.53516 1.43626 1.49485 1.56214 2.40923 2.48041 2.69668 2.89737 3.19979 3.46655 3.73891 3.77390 3.86253 4.03272 4.20475 4.23352 4.36146 4.41216 4.44583 4.48341 4.51585 4.63431 4.64147 4.66843 4.68736 4.71317 4.78710 4.79779 4.83969 4.85005 4.92091 5.01825 5.09207 5.19055 5.27108 5.33740 5.51152 5.62576 5.68074 5.73549 5.78947 5.97569 6.18561 6.40709 6.62290 6.96029 7.28513 7.88847 8.10278 8.34996 9.27373 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.004371 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.572956 B = 6404.833028 C = 7081.273788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.393 6.393 3 C 0.049 3.951 4 C 0.142 3.858 5 N -0.586 5.586 6 C -0.214 4.214 7 H 0.064 0.936 8 C -0.042 4.042 9 N -0.922 5.922 10 Si 0.955 3.045 11 H -0.276 1.276 12 H -0.311 1.311 13 H -0.289 1.289 14 C 0.169 3.831 15 C 0.538 3.462 16 O -0.576 6.576 17 N -0.628 5.628 18 C 0.116 3.884 19 C -0.083 4.083 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.121 4.121 25 C -0.105 4.105 26 C 0.162 3.838 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.030 0.970 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.240 0.760 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.138 0.862 45 H 0.067 0.933 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.313 16.854 -3.171 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.312 6.312 3 C -0.029 4.029 4 C 0.016 3.984 5 N -0.306 5.306 6 C -0.344 4.344 7 H 0.082 0.918 8 C -0.235 4.235 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.201 1.201 12 H -0.239 1.239 13 H -0.216 1.216 14 C 0.040 3.960 15 C 0.328 3.672 16 O -0.454 6.454 17 N -0.364 5.364 18 C -0.007 4.007 19 C -0.121 4.121 20 C -0.085 4.085 21 C -0.146 4.146 22 C -0.142 4.142 23 C -0.142 4.142 24 C -0.139 4.139 25 C -0.106 4.106 26 C 0.039 3.961 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.083 0.917 41 H 0.153 0.847 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.156 0.844 45 H 0.085 0.915 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.878 16.316 -3.061 16.624 hybrid contribution -0.850 -1.299 -0.554 1.648 sum 0.028 15.018 -3.615 15.447 Atomic orbital electron populations 1.22639 0.82027 1.02123 0.99082 1.87986 1.19255 1.28841 1.95083 1.23325 0.97259 0.84266 0.98098 1.21219 0.90565 0.97643 0.88937 1.43942 1.74406 1.02400 1.09836 1.19268 1.40380 0.82857 0.91938 0.91793 1.25365 1.01905 1.00456 0.95756 1.69801 1.57460 1.33354 0.96533 0.85364 0.76062 0.82858 0.77041 1.20067 1.23943 1.21630 1.20749 0.93854 0.92687 0.88725 1.22017 0.91515 0.73471 0.80239 1.90461 1.30649 1.51513 1.72803 1.48191 1.09005 1.52859 1.26337 1.21281 0.90202 0.95226 0.94011 1.20717 0.95302 0.93476 1.02577 1.19631 0.93972 0.95089 0.99818 1.21387 1.00007 0.92927 1.00277 1.21398 0.92258 1.00803 0.99718 1.21383 0.98747 0.94816 0.99244 1.21280 0.97912 0.94825 0.99901 1.20023 0.93880 0.95634 1.01077 1.20328 0.85518 0.89687 1.00602 0.90116 0.92787 0.96365 0.93426 0.95160 0.92725 0.89889 0.95033 0.88181 0.93011 0.92081 0.92158 0.88134 0.91722 0.84652 0.83596 0.83459 0.84422 0.91470 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 11.01 113.37 1.25 2.70 16 2 O -0.39 -18.55 9.98 -148.98 -1.49 -20.04 16 3 C 0.05 2.09 5.87 71.98 0.42 2.51 16 4 C 0.14 5.96 6.17 86.38 0.53 6.50 16 5 N -0.59 -29.29 2.06 -706.34 -1.46 -30.75 16 6 C -0.21 -11.98 9.00 84.03 0.76 -11.23 16 7 H 0.06 3.63 7.84 -2.91 -0.02 3.60 16 8 C -0.04 -2.36 5.41 84.86 0.46 -1.90 16 9 N -0.92 -52.67 8.21 21.65 0.18 -52.49 16 10 Si 0.95 48.15 29.56 68.60 2.03 50.18 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 C 0.17 7.86 3.89 85.63 0.33 8.19 16 15 C 0.54 25.70 5.67 87.66 0.50 26.20 16 16 O -0.58 -32.29 13.23 -3.03 -0.04 -32.33 16 17 N -0.63 -24.82 2.93 -823.93 -2.42 -27.24 16 18 C 0.12 4.14 6.44 86.17 0.55 4.69 16 19 C -0.08 -2.29 5.86 29.75 0.17 -2.12 16 20 C -0.08 -2.23 5.76 -19.85 -0.11 -2.35 16 21 C -0.13 -2.69 9.59 22.37 0.21 -2.47 16 22 C -0.12 -2.20 10.05 22.20 0.22 -1.98 16 23 C -0.12 -2.24 10.05 22.21 0.22 -2.02 16 24 C -0.12 -2.64 9.62 22.35 0.21 -2.43 16 25 C -0.11 -2.87 5.82 -19.81 -0.12 -2.98 16 26 C 0.16 5.19 6.09 85.65 0.52 5.72 16 27 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.44 6.03 -2.38 -0.01 1.43 16 32 H 0.05 2.24 8.07 -2.39 -0.02 2.22 16 33 H 0.08 2.90 7.84 -2.38 -0.02 2.88 16 34 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.10 5.05 6.22 -2.39 -0.01 5.04 16 36 H 0.05 2.06 7.30 -2.39 -0.02 2.04 16 37 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.06 2.48 7.07 -2.39 -0.02 2.46 16 39 H 0.10 2.21 8.11 -2.39 -0.02 2.19 16 40 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 41 H 0.14 2.26 8.05 -2.91 -0.02 2.23 16 42 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 43 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.14 2.51 8.05 -2.91 -0.02 2.48 16 45 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.09 2.90 6.19 -2.39 -0.01 2.88 16 Total: -1.00 -72.65 365.80 3.91 -68.74 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.96 Total: 16.90 kcal Atomic # 6 Polarization: 20.88 SS G_CDS: 6.15 Total: 27.02 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -3.70 Total: -110.48 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -1.53 Total: -52.36 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -72.65 3.91 -68.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459548364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.138 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds