Wall clock time and date at job start Tue Mar 31 2020 12:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38758 * 120.05922 * 359.72826 * 3 2 1 5 5 C 1.38121 * 119.94303 * 179.69478 * 4 3 2 6 6 C 1.38284 * 120.05670 * 0.60266 * 5 4 3 7 7 C 1.38245 * 120.11162 * 359.67148 * 6 5 4 8 8 C 1.38173 * 120.05607 * 0.02881 * 7 6 5 9 9 C 1.50698 * 120.02790 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.49250 * 145.07241 * 9 8 7 11 11 C 1.53240 * 109.48897 * 265.15345 * 9 8 7 12 12 N 1.47080 * 108.51937 * 173.79115 * 11 9 8 13 13 C 1.34782 * 120.88383 * 128.79211 * 12 11 9 14 14 O 1.21283 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47049 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47049 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99967 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99782 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47074 * 90.00311 * 21 19 17 23 23 H 1.48508 * 109.46849 * 210.00575 * 21 19 17 24 24 H 1.48503 * 109.47063 * 330.00175 * 21 19 17 25 25 C 1.47079 * 118.23687 * 308.81282 * 12 11 9 26 26 C 1.53243 * 108.52206 * 51.18568 * 25 12 11 27 27 N 1.46895 * 109.33665 * 306.17007 * 26 25 12 28 28 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 30 30 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02200 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.96674 * 180.29445 * 5 4 3 33 33 H 1.08003 * 119.94493 * 179.69558 * 6 5 4 34 34 H 1.08000 * 119.97262 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.62927 * 293.49584 * 11 9 8 36 36 H 1.08998 * 109.63290 * 54.07762 * 11 9 8 37 37 H 1.09005 * 109.46818 * 299.99847 * 15 13 12 38 38 H 1.08994 * 109.46780 * 59.99456 * 15 13 12 39 39 H 1.09003 * 109.47325 * 300.00148 * 16 15 13 40 40 H 1.09004 * 109.47690 * 59.99942 * 16 15 13 41 41 H 0.97006 * 120.00206 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.62831 * 291.47603 * 25 12 11 43 43 H 1.09004 * 109.79150 * 170.99350 * 25 12 11 44 44 H 1.09002 * 109.49274 * 186.21095 * 26 25 12 45 45 H 1.08996 * 109.49066 * 66.13082 * 26 25 12 46 46 H 1.00902 * 110.99959 * 187.25041 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 -0.0057 5 6 1.9208 3.6048 0.0007 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5173 0.0001 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0223 -0.0007 10 1 3.7466 -0.7425 0.5876 11 6 4.4300 -0.4723 -1.4403 12 7 5.3561 -1.6149 -1.4316 13 6 5.0311 -2.7735 -2.0388 14 8 3.9629 -2.8838 -2.6025 15 6 5.9949 -3.9318 -2.0171 16 6 5.3864 -5.1156 -2.7715 17 6 6.3499 -6.2742 -2.7493 18 1 7.3013 -6.1758 -2.2477 19 6 6.0173 -7.4595 -3.3703 20 7 6.8579 -8.4706 -3.3505 21 14 4.3721 -7.6294 -4.2385 22 1 4.5158 -7.2145 -5.6570 23 1 3.9250 -9.0444 -4.1794 24 1 3.3675 -6.7646 -3.5691 25 6 6.6462 -1.4598 -0.7425 26 6 6.3826 -0.9263 0.6697 27 7 5.5730 0.2964 0.5845 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3203 -0.0106 32 1 1.3338 4.5114 0.0011 33 1 3.7921 4.6382 0.0002 34 1 5.1343 2.5754 0.0001 35 1 3.4658 -0.7856 -1.8406 36 1 4.8420 0.3283 -2.0547 37 1 6.9286 -3.6366 -2.4959 38 1 6.1916 -4.2215 -0.9849 39 1 4.4528 -5.4107 -2.2924 40 1 5.1893 -4.8263 -3.8037 41 1 6.6238 -9.3046 -3.7870 42 1 7.2712 -0.7541 -1.2897 43 1 7.1503 -2.4244 -0.6813 44 1 7.3316 -0.7010 1.1564 45 1 5.8461 -1.6783 1.2483 46 1 5.4833 0.7345 1.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488581174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:06 Heat of formation + Delta-G solvation = -40.556711 kcal Electronic energy + Delta-G solvation = -26843.361601 eV Core-core repulsion = 23119.257299 eV Total energy + Delta-G solvation = -3724.104302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73021 -39.66692 -37.93487 -37.14889 -34.00057 -33.48150 -32.49432 -31.27939 -30.38050 -29.50668 -27.49613 -27.12275 -25.59962 -23.95864 -22.65461 -22.00681 -21.20209 -20.17404 -18.62056 -18.22246 -17.36071 -16.58918 -16.51504 -16.05426 -15.89404 -15.44762 -15.29378 -15.15006 -14.71242 -14.62445 -14.23515 -14.03626 -13.63940 -13.44809 -13.23343 -12.97001 -12.58400 -12.53079 -12.23464 -12.17401 -11.98163 -11.71214 -11.42354 -11.37458 -11.30951 -11.14501 -10.94098 -10.89852 -10.08703 -10.00527 -9.75637 -9.22753 -9.16011 -9.06530 -8.91733 -8.49500 -8.47310 -8.21390 -6.00968 -3.99325 1.04567 1.19450 3.05463 3.14405 3.21933 3.39843 3.46089 3.51960 3.57784 3.85458 4.46739 4.53230 4.63698 4.74722 4.80605 4.84240 4.90596 4.94787 5.06031 5.13676 5.18966 5.21987 5.27409 5.31139 5.34733 5.36273 5.50566 5.60932 5.71181 5.79906 5.89233 5.99423 6.05195 6.08380 6.12429 6.17362 6.27884 6.54645 6.63540 6.74138 6.81364 7.06103 7.16259 7.40045 7.46864 7.71222 7.82554 8.52153 8.67950 9.02141 9.62402 11.11863 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003027 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.523776 B = 9248.716253 C =10319.779382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.136 3.864 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.163 4.163 7 C -0.059 4.059 8 C -0.117 4.117 9 C 0.126 3.874 10 H 0.057 0.943 11 C 0.130 3.870 12 N -0.625 5.625 13 C 0.512 3.488 14 O -0.539 6.539 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.523 4.523 18 H 0.073 0.927 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 C 0.111 3.889 26 C 0.043 3.957 27 N -0.683 5.683 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.038 0.962 46 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.679 26.465 11.468 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.223 6.223 3 C 0.090 3.910 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.181 4.181 7 C -0.077 4.077 8 C -0.119 4.119 9 C 0.016 3.984 10 H 0.075 0.925 11 C 0.007 3.993 12 N -0.360 5.360 13 C 0.303 3.697 14 O -0.415 6.415 15 C -0.160 4.160 16 C -0.036 4.036 17 C -0.561 4.561 18 H 0.091 0.909 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 C -0.013 4.013 26 C -0.087 4.087 27 N -0.315 5.315 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.160 0.840 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.041 0.959 40 H 0.037 0.963 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.879 26.164 10.488 29.268 hybrid contribution -1.502 -0.382 0.336 1.586 sum -9.381 25.782 10.824 29.494 Atomic orbital electron populations 1.23080 0.78263 1.04274 1.01103 1.86161 1.21448 1.26511 1.88203 1.18917 0.91724 0.84521 0.95869 1.21192 0.99978 0.92299 1.09607 1.20949 0.94832 0.96822 0.97313 1.21093 0.93824 0.98535 1.04658 1.20987 1.00838 0.90296 0.95551 1.19075 0.89922 0.95439 1.07419 1.20490 0.87989 0.93178 0.96778 0.92530 1.21526 0.95391 0.88054 0.94360 1.48313 1.18341 1.13290 1.56054 1.21565 0.88240 0.83199 0.76722 1.90639 1.24981 1.82225 1.43656 1.21675 0.97830 0.93419 1.03032 1.19374 0.96715 0.92038 0.95506 1.21113 1.03725 0.95858 1.35443 0.90934 1.24967 0.96872 0.95667 0.95728 1.69910 1.36072 1.03677 1.44642 0.86803 0.85184 0.77059 0.80564 1.20228 1.21470 1.18536 1.21824 0.85440 1.02315 0.91727 1.22338 0.98169 0.90970 0.97183 1.60365 1.15086 1.26578 1.29480 0.92558 0.92790 0.88029 0.85519 0.86001 0.85908 0.84043 0.88788 0.91481 0.89636 0.89740 0.95893 0.96283 0.92747 0.90852 0.88582 0.89274 0.94328 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.77 9.63 -19.44 -0.19 -3.96 16 3 C 0.14 1.53 6.66 -39.22 -0.26 1.27 16 4 C -0.21 -1.96 9.04 -39.43 -0.36 -2.31 16 5 C -0.08 -0.66 10.04 -39.61 -0.40 -1.06 16 6 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 7 C -0.06 -0.54 9.18 -39.60 -0.36 -0.90 16 8 C -0.12 -1.29 4.99 -104.47 -0.52 -1.81 16 9 C 0.13 1.51 2.51 -68.74 -0.17 1.34 16 10 H 0.06 0.80 7.69 -51.93 -0.40 0.40 16 11 C 0.13 1.89 5.87 -3.60 -0.02 1.86 16 12 N -0.62 -9.67 3.01 -172.46 -0.52 -10.19 16 13 C 0.51 10.09 7.71 -10.98 -0.08 10.00 16 14 O -0.54 -12.68 15.43 5.55 0.09 -12.59 16 15 C -0.12 -2.42 4.01 -27.89 -0.11 -2.53 16 16 C 0.00 0.04 3.33 -27.89 -0.09 -0.05 16 17 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 21 Si 0.88 22.93 27.47 -169.99 -4.67 18.26 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.82 6.54 56.52 0.37 -6.45 16 25 C 0.11 1.29 6.50 -3.60 -0.02 1.27 16 26 C 0.04 0.42 6.70 -3.70 -0.02 0.39 16 27 N -0.68 -6.59 5.31 -107.69 -0.57 -7.16 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.01 16 29 H 0.05 0.35 7.67 -51.93 -0.40 -0.05 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.14 1.18 7.26 -52.49 -0.38 0.80 16 35 H 0.09 1.60 7.06 -51.93 -0.37 1.23 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.59 8.00 -51.93 -0.42 1.18 16 38 H 0.08 1.57 7.67 -51.93 -0.40 1.17 16 39 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 40 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 41 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.10 1.09 6.03 -51.93 -0.31 0.78 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.34 2.76 8.59 -39.29 -0.34 2.43 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -35.37 368.80 -8.84 -44.21 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.05 Total: -0.09 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.27 Total: -6.56 kcal Atomic # 7 Polarization: -44.50 SS G_CDS: -0.32 Total: -44.82 kcal Atomic # 8 Polarization: -16.45 SS G_CDS: -0.10 Total: -16.55 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.67 Total: 18.26 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.37 -8.84 -44.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488581174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.658 kcal (2) G-P(sol) polarization free energy of solvation -35.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds