Wall clock time and date at job start Tue Mar 31 2020 12:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35904 * 116.99628 * 2 1 4 4 C 1.38758 * 120.05922 * 359.72826 * 3 2 1 5 5 C 1.38121 * 119.94303 * 179.69478 * 4 3 2 6 6 C 1.38284 * 120.05670 * 0.60266 * 5 4 3 7 7 C 1.38245 * 120.11162 * 359.67148 * 6 5 4 8 8 C 1.38173 * 120.05607 * 0.02881 * 7 6 5 9 9 C 1.50698 * 120.02790 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.49250 * 145.07241 * 9 8 7 11 11 C 1.53240 * 109.48897 * 265.15345 * 9 8 7 12 12 N 1.47080 * 108.51937 * 173.79115 * 11 9 8 13 13 C 1.34782 * 120.88383 * 128.79211 * 12 11 9 14 14 O 1.21283 * 119.99755 * 0.02562 * 13 12 11 15 15 C 1.50700 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.52991 * 109.47049 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47049 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00095 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99967 * 180.02562 * 17 16 15 20 20 N 1.31507 * 119.99782 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47074 * 90.00311 * 21 19 17 23 23 H 1.48508 * 109.46849 * 210.00575 * 21 19 17 24 24 H 1.48503 * 109.47063 * 330.00175 * 21 19 17 25 25 C 1.47079 * 118.23687 * 308.81282 * 12 11 9 26 26 C 1.53243 * 108.52206 * 51.18568 * 25 12 11 27 27 N 1.46895 * 109.33665 * 306.17007 * 26 25 12 28 28 H 1.09002 * 109.47382 * 59.99787 * 1 2 3 29 29 H 1.09001 * 109.46938 * 299.99774 * 1 2 3 30 30 H 1.09004 * 109.46926 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02200 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.96674 * 180.29445 * 5 4 3 33 33 H 1.08003 * 119.94493 * 179.69558 * 6 5 4 34 34 H 1.08000 * 119.97262 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.62927 * 293.49584 * 11 9 8 36 36 H 1.08998 * 109.63290 * 54.07762 * 11 9 8 37 37 H 1.09005 * 109.46818 * 299.99847 * 15 13 12 38 38 H 1.08994 * 109.46780 * 59.99456 * 15 13 12 39 39 H 1.09003 * 109.47325 * 300.00148 * 16 15 13 40 40 H 1.09004 * 109.47690 * 59.99942 * 16 15 13 41 41 H 0.97006 * 120.00206 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.62831 * 291.47603 * 25 12 11 43 43 H 1.09004 * 109.79150 * 170.99350 * 25 12 11 44 44 H 1.09002 * 109.49274 * 186.21095 * 26 25 12 45 45 H 1.08996 * 109.49066 * 66.13082 * 26 25 12 46 46 H 1.00902 * 110.99959 * 187.25041 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3754 -0.0057 5 6 1.9208 3.6048 0.0007 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5173 0.0001 8 6 3.4311 1.2849 0.0000 9 6 4.2537 0.0223 -0.0007 10 1 3.7466 -0.7425 0.5876 11 6 4.4300 -0.4723 -1.4403 12 7 5.3561 -1.6149 -1.4316 13 6 5.0311 -2.7735 -2.0388 14 8 3.9629 -2.8838 -2.6025 15 6 5.9949 -3.9318 -2.0171 16 6 5.3864 -5.1156 -2.7715 17 6 6.3499 -6.2742 -2.7493 18 1 7.3013 -6.1758 -2.2477 19 6 6.0173 -7.4595 -3.3703 20 7 6.8579 -8.4706 -3.3505 21 14 4.3721 -7.6294 -4.2385 22 1 4.5158 -7.2145 -5.6570 23 1 3.9250 -9.0444 -4.1794 24 1 3.3675 -6.7646 -3.5691 25 6 6.6462 -1.4598 -0.7425 26 6 6.3826 -0.9263 0.6697 27 7 5.5730 0.2964 0.5845 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2127 2.3203 -0.0106 32 1 1.3338 4.5114 0.0011 33 1 3.7921 4.6382 0.0002 34 1 5.1343 2.5754 0.0001 35 1 3.4658 -0.7856 -1.8406 36 1 4.8420 0.3283 -2.0547 37 1 6.9286 -3.6366 -2.4959 38 1 6.1916 -4.2215 -0.9849 39 1 4.4528 -5.4107 -2.2924 40 1 5.1893 -4.8263 -3.8037 41 1 6.6238 -9.3046 -3.7870 42 1 7.2712 -0.7541 -1.2897 43 1 7.1503 -2.4244 -0.6813 44 1 7.3316 -0.7010 1.1564 45 1 5.8461 -1.6783 1.2483 46 1 5.4833 0.7345 1.4890 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488581174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:06 Heat of formation + Delta-G solvation = -64.810796 kcal Electronic energy + Delta-G solvation = -26844.413337 eV Core-core repulsion = 23119.257299 eV Total energy + Delta-G solvation = -3725.156038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61545 -40.87670 -38.96384 -38.05640 -35.61734 -35.10874 -33.51580 -33.17880 -31.07450 -30.42405 -28.71427 -28.12245 -27.05722 -25.02792 -23.62206 -22.92910 -22.67454 -21.32654 -19.92062 -19.27349 -18.91744 -18.07645 -17.32419 -16.98931 -16.96666 -16.64985 -16.55664 -16.25359 -16.13176 -15.56485 -15.34776 -15.04530 -14.88250 -14.80219 -14.56269 -14.32695 -13.88595 -13.68800 -13.45081 -13.36875 -12.94417 -12.93159 -12.74177 -12.53730 -12.28163 -12.20815 -12.04965 -12.01318 -11.96474 -11.80032 -11.64106 -11.40977 -10.79392 -10.75162 -10.00455 -9.82188 -9.40018 -9.09678 -8.32795 -6.35301 0.34730 0.50185 1.31203 1.32879 1.48553 1.60876 1.96259 2.33674 2.37472 2.81170 3.02330 3.02682 3.62400 3.71684 3.95788 4.02041 4.04783 4.08562 4.16850 4.28217 4.30298 4.31803 4.32355 4.40131 4.44932 4.45853 4.51986 4.64272 4.66092 4.73339 4.82537 4.87882 4.97883 5.04791 5.10012 5.29033 5.36346 5.40396 5.47491 5.49480 5.58570 5.60844 5.88857 5.94867 6.21644 6.28840 6.41635 6.46299 6.70245 7.16931 7.29963 8.82726 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003027 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.523776 B = 9248.716253 C =10319.779382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.112 3.888 4 C -0.218 4.218 5 C -0.080 4.080 6 C -0.162 4.162 7 C -0.058 4.058 8 C -0.137 4.137 9 C 0.141 3.859 10 H 0.028 0.972 11 C 0.132 3.868 12 N -0.615 5.615 13 C 0.510 3.490 14 O -0.588 6.588 15 C -0.110 4.110 16 C 0.006 3.994 17 C -0.527 4.527 18 H 0.054 0.946 19 C 0.016 3.984 20 N -0.941 5.941 21 Si 0.935 3.065 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.265 1.265 25 C 0.101 3.899 26 C 0.047 3.953 27 N -0.672 5.672 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.006 0.994 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.124 0.876 45 H 0.027 0.973 46 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.537 29.299 12.306 32.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.180 4.180 7 C -0.076 4.076 8 C -0.139 4.139 9 C 0.031 3.969 10 H 0.046 0.954 11 C 0.009 3.991 12 N -0.348 5.348 13 C 0.301 3.699 14 O -0.469 6.469 15 C -0.150 4.150 16 C -0.032 4.032 17 C -0.565 4.565 18 H 0.072 0.928 19 C -0.182 4.182 20 N -0.582 5.582 21 Si 0.760 3.240 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.021 4.021 26 C -0.083 4.083 27 N -0.305 5.305 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.142 0.858 45 H 0.045 0.955 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.703 29.044 11.368 32.127 hybrid contribution -1.492 -1.167 0.130 1.899 sum -9.195 27.877 11.498 31.526 Atomic orbital electron populations 1.23260 0.76806 1.04857 1.02367 1.86113 1.23252 1.27665 1.88614 1.19224 0.92222 0.84906 0.97016 1.21448 1.00855 0.92096 1.09220 1.21338 0.95263 0.97330 0.95861 1.21440 0.93991 0.99211 1.03374 1.21132 1.01433 0.89920 0.95118 1.19117 0.89988 0.95537 1.09251 1.20154 0.89071 0.93182 0.94541 0.95367 1.21538 0.93653 0.87515 0.96386 1.48327 1.19735 1.12132 1.54625 1.21389 0.87380 0.84252 0.76892 1.90617 1.26768 1.83266 1.46199 1.21492 0.98192 0.91929 1.03386 1.19215 0.95470 0.93028 0.95439 1.21392 1.03544 0.96980 1.34596 0.92824 1.25757 1.00185 0.95575 0.96679 1.70009 1.37914 1.04366 1.45879 0.85874 0.80984 0.77461 0.79664 1.19323 1.20118 1.19004 1.22187 0.83662 1.03409 0.92862 1.22380 0.99592 0.90623 0.95704 1.60346 1.13490 1.26371 1.30274 0.91735 0.90982 0.87915 0.83992 0.83268 0.83329 0.83025 0.92020 0.90561 0.87769 0.88056 0.97548 0.97495 0.92324 0.88985 0.88065 0.85768 0.95490 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -8.69 9.63 -92.47 -0.89 -9.58 16 3 C 0.11 2.52 6.66 22.51 0.15 2.67 16 4 C -0.22 -3.70 9.04 22.37 0.20 -3.50 16 5 C -0.08 -1.08 10.04 22.25 0.22 -0.86 16 6 C -0.16 -2.17 10.04 22.28 0.22 -1.94 16 7 C -0.06 -0.95 9.18 22.26 0.20 -0.75 16 8 C -0.14 -2.95 4.99 -19.77 -0.10 -3.05 16 9 C 0.14 3.37 2.51 44.25 0.11 3.48 16 10 H 0.03 0.83 7.69 -2.39 -0.02 0.81 16 11 C 0.13 3.88 5.87 86.35 0.51 4.39 16 12 N -0.61 -18.84 3.01 -817.91 -2.46 -21.30 16 13 C 0.51 20.35 7.71 87.66 0.68 21.03 16 14 O -0.59 -28.68 15.43 -3.04 -0.05 -28.72 16 15 C -0.11 -4.44 4.01 29.85 0.12 -4.32 16 16 C 0.01 0.33 3.33 29.85 0.10 0.43 16 17 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 18 H 0.05 3.28 7.99 -2.91 -0.02 3.25 16 19 C 0.02 0.96 5.47 84.66 0.46 1.42 16 20 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 21 Si 0.94 47.79 27.47 68.60 1.88 49.68 16 22 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 23 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -13.67 6.54 99.48 0.65 -13.02 16 25 C 0.10 2.15 6.50 86.35 0.56 2.71 16 26 C 0.05 0.79 6.70 86.39 0.58 1.37 16 27 N -0.67 -11.60 5.31 -494.62 -2.63 -14.23 16 28 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 29 H 0.07 0.89 7.67 -2.39 -0.02 0.87 16 30 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.14 1.84 6.30 -2.91 -0.02 1.82 16 32 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.15 1.20 8.06 -2.91 -0.02 1.17 16 34 H 0.15 2.09 7.26 -2.91 -0.02 2.07 16 35 H 0.06 2.23 7.06 -2.39 -0.02 2.21 16 36 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.10 3.77 8.00 -2.38 -0.02 3.75 16 38 H 0.10 3.70 7.67 -2.39 -0.02 3.68 16 39 H 0.01 0.34 7.16 -2.39 -0.02 0.32 16 40 H 0.01 0.36 7.53 -2.39 -0.02 0.34 16 41 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 2.08 6.03 -2.39 -0.01 2.07 16 44 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.36 4.87 8.59 -89.69 -0.77 4.10 16 Total: -1.00 -78.65 368.80 1.70 -76.96 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.16 Total: 12.40 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.38 Total: -6.13 kcal Atomic # 7 Polarization: -89.81 SS G_CDS: -4.79 Total: -94.60 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.94 Total: -38.31 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 1.88 Total: 49.68 kcal Total: -78.65 1.70 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488581174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.146 kcal (2) G-P(sol) polarization free energy of solvation -78.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds