Wall clock time and date at job start Tue Mar 31 2020 12:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99818 * 2 1 4 4 H 1.09001 * 109.47492 * 329.99911 * 3 2 1 5 5 C 1.52996 * 109.47093 * 90.00129 * 3 2 1 6 6 C 1.52999 * 109.47372 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47032 * 299.99849 * 6 5 3 8 8 C 1.53005 * 109.46915 * 60.00039 * 7 6 5 9 9 H 1.08997 * 109.47571 * 59.99908 * 8 7 6 10 10 C 1.53002 * 109.46915 * 179.97438 * 8 7 6 11 11 C 1.50700 * 109.46906 * 294.99547 * 10 8 7 12 12 O 1.21269 * 120.00362 * 0.02562 * 11 10 8 13 13 N 1.34777 * 119.99673 * 180.02562 * 11 10 8 14 14 C 1.39468 * 119.99997 * 175.14244 * 13 11 10 15 15 C 1.38598 * 119.57762 * 184.90539 * 14 13 11 16 16 C 1.40817 * 118.78961 * 179.71867 * 15 14 13 17 17 C 1.41541 * 120.99361 * 180.25216 * 16 15 14 18 18 H 1.07994 * 119.99961 * 203.93501 * 17 16 15 19 19 C 1.40034 * 120.00034 * 23.93426 * 17 16 15 20 20 N 1.30743 * 120.00327 * 16.83353 * 19 17 16 21 21 Si 1.86806 * 120.00170 * 196.83698 * 19 17 16 22 22 H 1.48500 * 109.46918 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47345 * 119.99592 * 21 19 17 24 24 H 1.48500 * 109.47196 * 239.99932 * 21 19 17 25 25 C 1.41170 * 118.01124 * 0.53349 * 16 15 14 26 26 C 1.37593 * 119.01030 * 359.73679 * 25 16 15 27 27 N 1.32080 * 121.11254 * 359.97438 * 26 25 16 28 28 C 1.52999 * 109.46873 * 299.99749 * 8 7 6 29 29 H 1.09003 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46814 * 300.00079 * 1 2 3 31 31 H 1.08997 * 109.47032 * 59.99762 * 1 2 3 32 32 H 1.08997 * 109.47434 * 59.99939 * 5 3 2 33 33 H 1.09004 * 109.47553 * 299.99895 * 5 3 2 34 34 H 1.09005 * 109.47401 * 180.02562 * 6 5 3 35 35 H 1.09001 * 109.47360 * 59.99692 * 6 5 3 36 36 H 1.08990 * 109.47361 * 299.99944 * 7 6 5 37 37 H 1.09003 * 109.47132 * 179.97438 * 7 6 5 38 38 H 1.08996 * 109.47415 * 54.99901 * 10 8 7 39 39 H 1.09003 * 109.47007 * 174.99961 * 10 8 7 40 40 H 0.97008 * 120.00230 * 355.14172 * 13 11 10 41 41 H 1.07993 * 120.60592 * 359.97438 * 15 14 13 42 42 H 0.96998 * 120.00367 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.49817 * 179.72357 * 25 16 15 44 44 H 1.08001 * 119.44314 * 179.97438 * 26 25 16 45 45 H 1.09005 * 109.47036 * 180.02562 * 28 8 7 46 46 H 1.09001 * 109.47613 * 300.00325 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9995 -0.5138 5 6 2.2177 1.7714 1.4425 6 6 2.8393 3.1694 1.4425 7 6 4.1880 3.1278 0.7211 8 6 3.9805 2.6620 -0.7214 9 1 3.3149 3.3556 -1.2352 10 6 5.3290 2.6210 -1.4430 11 6 5.8835 4.0182 -1.5512 12 8 5.2616 4.9543 -1.0956 13 7 7.0705 4.2273 -2.1543 14 6 7.5363 5.5280 -2.3448 15 6 8.7075 5.7379 -3.0557 16 6 9.1594 7.0583 -3.2433 17 6 10.3464 7.3266 -3.9662 18 1 10.8894 8.2436 -3.7914 19 6 10.8166 6.4031 -4.9079 20 7 10.0209 5.4706 -5.3628 21 14 12.5806 6.5032 -5.5143 22 1 13.2684 7.6397 -4.8506 23 1 13.2880 5.2384 -5.1902 24 1 12.5876 6.7115 -6.9846 25 6 8.3966 8.1061 -2.6836 26 6 7.2496 7.7987 -1.9884 27 7 6.8565 6.5465 -1.8398 28 6 3.3589 1.2640 -0.7214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 2.8829 1.0775 1.9563 33 1 1.2569 1.8015 1.9564 34 1 2.9876 3.5011 2.4702 35 1 2.1737 3.8631 0.9288 36 1 4.8536 2.4343 1.2347 37 1 4.6307 4.1239 0.7208 38 1 6.0234 1.9971 -0.8804 39 1 5.1943 2.2054 -2.4416 40 1 7.6009 3.4731 -2.4558 41 1 9.2611 4.9044 -3.4619 42 1 10.3467 4.8307 -6.0149 43 1 8.7086 9.1335 -2.7992 44 1 6.6609 8.5947 -1.5570 45 1 3.2115 0.9319 -1.7491 46 1 4.0244 0.5703 -0.2077 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527000970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:38 Heat of formation + Delta-G solvation = -87.698348 kcal Electronic energy + Delta-G solvation = -26252.476040 eV Core-core repulsion = 22526.327523 eV Total energy + Delta-G solvation = -3726.148517 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37933 -40.30458 -39.39342 -37.46095 -36.08907 -35.41510 -33.43709 -32.44596 -31.08894 -30.54868 -28.08109 -27.84481 -27.28610 -23.90764 -23.68403 -23.34979 -22.25717 -21.10075 -20.74467 -19.43129 -18.36696 -17.54629 -17.24537 -16.94886 -16.56356 -16.43884 -16.07646 -16.03353 -15.89347 -15.50457 -15.04782 -14.95761 -14.51906 -14.37053 -14.30255 -14.08140 -13.82942 -13.28824 -13.16371 -13.00510 -12.90289 -12.69908 -12.66608 -12.45210 -12.07377 -11.93659 -11.92364 -11.90406 -11.59678 -11.37078 -11.35645 -11.28797 -11.12654 -10.72620 -10.37600 -9.94640 -9.55093 -8.84464 -8.64186 -6.56538 0.77002 0.99413 1.41071 1.53717 1.56516 1.95659 2.19120 2.21240 2.79965 2.82438 3.64075 3.73064 3.74619 3.77633 4.08932 4.10319 4.19048 4.28174 4.32518 4.50096 4.51771 4.54358 4.56466 4.67083 4.69278 4.74919 4.78467 4.82766 4.87877 4.88953 4.93716 5.05302 5.08128 5.09888 5.21837 5.23438 5.26340 5.34736 5.47331 5.50167 5.55477 5.69207 5.91140 6.16584 6.30030 6.49477 6.65558 6.79992 6.83103 7.39953 7.86695 8.25766 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026743 B = 0.002413 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.753122 B =11602.076993 C =12336.171952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.088 3.912 4 H 0.059 0.941 5 C -0.132 4.132 6 C -0.111 4.111 7 C -0.121 4.121 8 C -0.060 4.060 9 H 0.060 0.940 10 C -0.124 4.124 11 C 0.492 3.508 12 O -0.518 6.518 13 N -0.656 5.656 14 C 0.335 3.665 15 C -0.264 4.264 16 C 0.113 3.887 17 C -0.485 4.485 18 H 0.082 0.918 19 C 0.040 3.960 20 N -0.811 5.811 21 Si 0.987 3.013 22 H -0.259 1.259 23 H -0.261 1.261 24 H -0.266 1.266 25 C -0.301 4.301 26 C 0.113 3.887 27 N -0.577 5.577 28 C -0.103 4.103 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.422 0.578 41 H 0.124 0.876 42 H 0.293 0.707 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.076 0.924 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.874 -13.083 6.846 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C 0.031 3.969 4 H 0.077 0.923 5 C -0.170 4.170 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.079 4.079 9 H 0.078 0.922 10 C -0.164 4.164 11 C 0.280 3.720 12 O -0.391 6.391 13 N -0.304 5.304 14 C 0.109 3.891 15 C -0.289 4.289 16 C 0.104 3.896 17 C -0.515 4.515 18 H 0.101 0.899 19 C -0.178 4.178 20 N -0.436 5.436 21 Si 0.807 3.193 22 H -0.183 1.183 23 H -0.185 1.185 24 H -0.190 1.190 25 C -0.325 4.325 26 C -0.041 4.041 27 N -0.297 5.297 28 C -0.140 4.140 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.259 0.741 41 H 0.141 0.859 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.165 0.835 45 H 0.094 0.906 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.096 -13.021 7.501 19.291 hybrid contribution 1.511 0.532 -1.057 1.919 sum -10.585 -12.489 6.445 17.594 Atomic orbital electron populations 1.22947 0.80012 1.03683 1.00529 1.87862 1.20983 1.28327 1.95214 1.22140 0.94954 0.84031 0.95776 0.92267 1.21969 1.01421 0.96701 0.96873 1.21411 0.96312 0.96489 1.00635 1.21694 0.97717 1.01587 0.94887 1.20741 0.94723 0.96460 0.95990 0.92198 1.21777 0.98392 0.91510 1.04708 1.21684 0.80251 0.93040 0.77071 1.90720 1.58241 1.45765 1.44344 1.43613 1.21753 1.05705 1.59317 1.18483 0.91091 0.85766 0.93738 1.21532 0.99633 0.98592 1.09191 1.18019 0.91852 0.91132 0.88550 1.19881 1.07186 1.05587 1.18886 0.89940 1.26825 1.03431 0.93014 0.94494 1.69812 1.37599 1.13615 1.22558 0.85082 0.76089 0.79741 0.78356 1.18258 1.18498 1.19041 1.22062 0.99952 0.99022 1.11465 1.22207 0.93986 0.92684 0.95229 1.67366 1.35118 0.99292 1.27914 1.21552 0.95210 0.95937 1.01337 0.88419 0.93473 0.93596 0.91118 0.91346 0.91336 0.92689 0.91483 0.92811 0.86313 0.86576 0.74065 0.85850 0.89625 0.86835 0.83454 0.90551 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.82 113.37 1.23 1.56 16 2 O -0.40 -7.89 10.35 -148.98 -1.54 -9.43 16 3 C 0.09 1.66 2.61 30.59 0.08 1.74 16 4 H 0.06 1.11 7.79 -2.39 -0.02 1.09 16 5 C -0.13 -2.37 5.54 30.59 0.17 -2.20 16 6 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 7 C -0.12 -2.97 4.95 30.60 0.15 -2.82 16 8 C -0.06 -1.37 1.84 -10.79 -0.02 -1.39 16 9 H 0.06 1.62 7.95 -2.39 -0.02 1.60 16 10 C -0.12 -2.82 5.18 29.85 0.15 -2.66 16 11 C 0.49 17.44 7.51 87.66 0.66 18.10 16 12 O -0.52 -22.79 12.22 -2.99 -0.04 -22.83 16 13 N -0.66 -25.06 5.39 -308.67 -1.66 -26.72 16 14 C 0.34 16.40 7.42 132.76 0.98 17.38 16 15 C -0.26 -13.63 8.62 22.99 0.20 -13.43 16 16 C 0.11 6.07 5.60 -21.11 -0.12 5.95 16 17 C -0.48 -25.24 9.12 23.52 0.21 -25.02 16 18 H 0.08 4.13 7.90 -2.91 -0.02 4.11 16 19 C 0.04 1.89 5.20 85.29 0.44 2.34 16 20 N -0.81 -39.56 10.93 21.84 0.24 -39.33 16 21 Si 0.99 35.76 29.59 68.60 2.03 37.79 16 22 H -0.26 -9.30 7.11 99.48 0.71 -8.60 16 23 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 24 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 25 C -0.30 -15.15 9.90 22.84 0.23 -14.93 16 26 C 0.11 5.51 11.15 84.50 0.94 6.45 16 27 N -0.58 -29.77 7.85 -193.53 -1.52 -31.29 16 28 C -0.10 -1.89 4.86 30.59 0.15 -1.74 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 31 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.10 7.87 -2.38 -0.02 1.08 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.05 1.74 5.95 -2.39 -0.01 1.72 16 38 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.42 12.93 8.70 -92.70 -0.81 12.12 16 41 H 0.12 6.30 6.21 -2.91 -0.02 6.28 16 42 H 0.29 12.66 8.29 -92.71 -0.77 11.90 16 43 H 0.11 5.24 8.06 -2.91 -0.02 5.21 16 44 H 0.15 6.22 8.06 -2.91 -0.02 6.19 16 45 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 46 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -67.89 369.87 3.32 -64.57 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.17 Total: 40.05 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: 5.64 Total: -12.82 kcal Atomic # 7 Polarization: -94.39 SS G_CDS: -2.94 Total: -97.33 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -1.58 Total: -32.26 kcal Atomic # 14 Polarization: 35.76 SS G_CDS: 2.03 Total: 37.79 kcal Total: -67.89 3.32 -64.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527000970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.127 kcal (2) G-P(sol) polarization free energy of solvation -67.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds