Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99876 * 2 1 4 4 C 1.38748 * 119.95330 * 0.02562 * 3 2 1 5 5 C 1.38267 * 119.84824 * 179.63326 * 4 3 2 6 6 C 1.38033 * 119.71605 * 359.93520 * 5 4 3 7 7 C 1.37863 * 120.74288 * 0.76368 * 6 5 4 8 8 C 1.38316 * 119.77595 * 358.97013 * 7 6 5 9 9 C 1.50831 * 120.39433 * 178.84542 * 7 6 5 10 10 C 1.53151 * 108.76056 * 288.89826 * 9 7 6 11 11 C 1.52298 * 110.25884 * 87.41043 * 10 9 7 12 12 N 1.45854 * 112.09361 * 296.78848 * 11 10 9 13 13 C 1.34776 * 119.61717 * 244.52995 * 12 11 10 14 14 O 1.21588 * 119.99439 * 4.86858 * 13 12 11 15 15 N 1.34772 * 120.00375 * 184.59449 * 13 12 11 16 16 C 1.46502 * 120.00001 * 175.15106 * 15 13 12 17 17 C 1.53007 * 109.46963 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46948 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99907 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00143 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00052 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47296 * 60.00177 * 22 20 18 24 24 H 1.48506 * 109.47287 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47111 * 299.99984 * 22 20 18 26 26 C 1.46688 * 120.77530 * 64.80194 * 12 11 10 27 27 H 1.09007 * 109.47578 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47407 * 299.99900 * 1 2 3 29 29 H 1.09002 * 109.47235 * 59.99647 * 1 2 3 30 30 H 1.08003 * 120.07993 * 359.65087 * 4 3 2 31 31 H 1.08005 * 120.14028 * 179.91592 * 5 4 3 32 32 H 1.08006 * 120.09050 * 180.57390 * 8 7 6 33 33 H 1.08996 * 109.58739 * 169.11566 * 9 7 6 34 34 H 1.08996 * 109.70580 * 48.75119 * 9 7 6 35 35 H 1.08998 * 109.34477 * 327.16470 * 10 9 7 36 36 H 1.09004 * 109.20765 * 207.57202 * 10 9 7 37 37 H 1.09000 * 108.95315 * 176.11423 * 11 10 9 38 38 H 1.09003 * 108.88519 * 57.41454 * 11 10 9 39 39 H 0.97004 * 120.00181 * 355.15152 * 15 13 12 40 40 H 1.09005 * 109.46716 * 299.99463 * 16 15 13 41 41 H 1.08994 * 109.47596 * 59.99657 * 16 15 13 42 42 H 1.08998 * 109.46772 * 299.99957 * 17 16 15 43 43 H 1.09002 * 109.47040 * 59.99784 * 17 16 15 44 44 H 0.96991 * 120.00138 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.61575 * 36.13051 * 26 12 11 46 46 H 1.09000 * 109.62134 * 156.66527 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2893 2.3739 0.0005 5 6 1.9192 3.6047 0.0082 6 6 3.2981 3.6676 0.0166 7 6 4.0562 2.5162 0.0017 8 6 3.4312 1.2823 -0.0004 9 6 5.5624 2.5944 -0.0151 10 6 6.0142 3.0964 -1.3897 11 6 6.0436 4.6189 -1.4115 12 7 4.7192 5.1961 -1.2111 13 6 4.1472 5.9105 -2.2005 14 8 4.6947 5.9967 -3.2827 15 7 2.9658 6.5247 -1.9921 16 6 2.3957 7.3875 -3.0298 17 6 1.0609 7.9559 -2.5438 18 6 0.4747 8.8439 -3.6110 19 1 1.0013 8.9881 -4.5428 20 6 -0.7338 9.4723 -3.3978 21 7 -1.3749 9.2972 -2.2628 22 14 -1.4608 10.5725 -4.7208 23 1 -1.6817 9.7802 -5.9572 24 1 -2.7563 11.1243 -4.2491 25 1 -0.5227 11.6871 -5.0083 26 6 4.0048 5.0131 0.0570 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2107 2.3180 -0.0047 31 1 1.3349 4.5130 0.0073 32 1 4.0202 0.3770 -0.0027 33 1 5.9817 1.6052 0.1686 34 1 5.9032 3.2849 0.7563 35 1 5.3212 2.7377 -2.1507 36 1 7.0124 2.7129 -1.6011 37 1 6.4330 4.9517 -2.3737 38 1 6.7064 4.9704 -0.6208 39 1 2.4930 6.3955 -1.1550 40 1 3.0843 8.2058 -3.2406 41 1 2.2337 6.8060 -3.9373 42 1 0.3726 7.1374 -2.3332 43 1 1.2225 8.5374 -1.6361 44 1 -2.2249 9.7396 -2.1127 45 1 4.7156 5.0299 0.8832 46 1 3.2737 5.8116 0.1837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541317474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -46.597192 kcal Electronic energy + Delta-G solvation = -26904.172576 eV Core-core repulsion = 23179.806339 eV Total energy + Delta-G solvation = -3724.366237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80641 -39.76807 -38.20553 -35.95733 -34.80424 -33.94550 -32.71128 -31.16436 -30.78730 -29.38941 -27.72303 -26.15641 -25.58000 -24.51231 -22.80962 -22.00536 -20.92672 -20.47551 -19.46515 -18.03341 -17.82734 -16.56970 -16.34196 -16.15364 -15.90217 -15.69019 -15.09975 -14.62774 -14.59256 -14.44900 -14.00535 -13.86671 -13.57062 -13.49969 -13.18410 -13.04486 -12.76750 -12.43357 -12.27170 -12.10386 -11.98174 -11.68047 -11.23869 -11.15814 -11.09309 -11.00653 -10.82494 -10.79080 -10.63777 -10.30037 -9.85803 -9.52622 -9.26550 -8.90900 -8.73801 -8.45793 -8.26244 -8.12519 -6.08626 -4.11000 1.20229 1.28316 2.97007 3.08541 3.31952 3.35493 3.39306 3.57314 3.64275 4.29454 4.45453 4.53351 4.64114 4.70110 4.81674 4.84681 4.91368 4.95397 4.99416 5.08227 5.21399 5.27001 5.28563 5.36464 5.41874 5.44459 5.63198 5.64973 5.73766 5.89468 5.94933 6.07399 6.19752 6.26905 6.30268 6.42359 6.51845 6.61652 6.71770 6.79465 7.03642 7.19318 7.23472 7.56354 7.64026 7.90535 8.26050 8.39646 8.93439 9.01745 9.53645 11.03035 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003452 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.864439 B = 8110.110582 C = 9929.442754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.321 6.321 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.059 4.059 6 C -0.142 4.142 7 C -0.029 4.029 8 C -0.154 4.154 9 C -0.081 4.081 10 C -0.132 4.132 11 C 0.128 3.872 12 N -0.626 5.626 13 C 0.702 3.298 14 O -0.596 6.596 15 N -0.738 5.738 16 C 0.139 3.861 17 C 0.014 3.986 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.156 3.844 27 H 0.098 0.902 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.128 0.872 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.062 0.938 39 H 0.391 0.609 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.262 0.738 45 H 0.088 0.912 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -17.512 10.493 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.083 3.917 4 C -0.228 4.228 5 C -0.078 4.078 6 C -0.144 4.144 7 C -0.029 4.029 8 C -0.173 4.173 9 C -0.118 4.118 10 C -0.171 4.171 11 C 0.004 3.996 12 N -0.364 5.364 13 C 0.404 3.596 14 O -0.474 6.474 15 N -0.393 5.393 16 C 0.016 3.984 17 C -0.023 4.023 18 C -0.559 4.559 19 H 0.077 0.923 20 C -0.142 4.142 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.033 3.967 27 H 0.117 0.883 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.081 0.919 39 H 0.226 0.774 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.311 -17.528 9.761 22.558 hybrid contribution -1.249 0.547 -0.207 1.380 sum 9.062 -16.981 9.555 21.489 Atomic orbital electron populations 1.23064 0.78292 1.03822 1.01653 1.86041 1.21482 1.27110 1.88779 1.19021 0.92265 0.84112 0.96259 1.21262 1.00171 0.92230 1.09136 1.20865 0.93584 0.97554 0.95766 1.20142 0.93543 0.95462 1.05236 1.19472 0.95640 0.91559 0.96248 1.20287 0.91218 0.97898 1.07885 1.20723 0.90647 1.02261 0.98144 1.21837 1.02019 0.96336 0.96861 1.21021 0.82806 0.92312 1.03458 1.46961 1.19167 1.55950 1.14273 1.16015 0.81524 0.78542 0.83560 1.90866 1.65294 1.67544 1.23727 1.45680 1.21019 1.51134 1.21435 1.21595 0.96336 0.91384 0.89088 1.19309 0.89626 0.96054 0.97343 1.21015 1.05100 1.28035 1.01762 0.92280 1.24979 0.96870 0.96672 0.95676 1.69942 1.15860 1.43697 1.23904 0.86579 0.78266 0.80846 0.81887 1.20123 1.21268 1.20097 1.20629 0.95882 0.93458 0.86746 0.88344 0.92553 0.92440 0.85295 0.85169 0.85406 0.90767 0.90351 0.91166 0.90380 0.88746 0.91944 0.77388 0.92843 0.92776 0.96075 0.96038 0.92841 0.89435 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.65 10.49 -19.42 -0.20 -3.85 16 3 C 0.13 1.56 6.68 -39.22 -0.26 1.30 16 4 C -0.21 -2.50 9.04 -39.38 -0.36 -2.85 16 5 C -0.06 -0.72 9.71 -39.65 -0.38 -1.11 16 6 C -0.14 -1.68 5.47 -104.17 -0.57 -2.25 16 7 C -0.03 -0.32 4.98 -104.67 -0.52 -0.84 16 8 C -0.15 -1.77 9.62 -39.38 -0.38 -2.15 16 9 C -0.08 -0.69 5.41 -27.74 -0.15 -0.84 16 10 C -0.13 -1.28 5.85 -27.01 -0.16 -1.44 16 11 C 0.13 1.47 5.84 -4.75 -0.03 1.44 16 12 N -0.63 -8.66 2.65 -180.80 -0.48 -9.13 16 13 C 0.70 12.89 8.25 -86.92 -0.72 12.18 16 14 O -0.60 -13.15 15.64 5.29 0.08 -13.07 16 15 N -0.74 -13.59 5.43 -65.22 -0.35 -13.94 16 16 C 0.14 3.04 5.62 -4.04 -0.02 3.02 16 17 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 18 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 22 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C 0.16 1.75 5.36 -4.43 -0.02 1.72 16 27 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 28 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 29 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.13 1.33 6.29 -52.48 -0.33 1.00 16 31 H 0.13 1.52 8.00 -52.48 -0.42 1.10 16 32 H 0.13 1.28 7.98 -52.48 -0.42 0.86 16 33 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 34 H 0.08 0.59 6.93 -51.93 -0.36 0.23 16 35 H 0.07 0.86 7.84 -51.93 -0.41 0.46 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.28 6.85 -51.93 -0.36 0.93 16 38 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 39 H 0.39 6.31 6.02 -40.82 -0.25 6.07 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.09 0.77 7.32 -51.93 -0.38 0.39 16 46 H 0.09 0.95 5.73 -51.93 -0.30 0.65 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -33.51 368.81 -9.73 -43.24 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -6.92 Total: 3.71 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -3.13 Total: -3.64 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.10 Total: -48.33 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.12 Total: -16.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.51 -9.73 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541317474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.359 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds