Wall clock time and date at job start Tue Mar 31 2020 12:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35898 * 116.99876 * 2 1 4 4 C 1.38748 * 119.95330 * 0.02562 * 3 2 1 5 5 C 1.38267 * 119.84824 * 179.63326 * 4 3 2 6 6 C 1.38033 * 119.71605 * 359.93520 * 5 4 3 7 7 C 1.37863 * 120.74288 * 0.76368 * 6 5 4 8 8 C 1.38316 * 119.77595 * 358.97013 * 7 6 5 9 9 C 1.50831 * 120.39433 * 178.84542 * 7 6 5 10 10 C 1.53151 * 108.76056 * 288.89826 * 9 7 6 11 11 C 1.52298 * 110.25884 * 87.41043 * 10 9 7 12 12 N 1.45854 * 112.09361 * 296.78848 * 11 10 9 13 13 C 1.34776 * 119.61717 * 244.52995 * 12 11 10 14 14 O 1.21588 * 119.99439 * 4.86858 * 13 12 11 15 15 N 1.34772 * 120.00375 * 184.59449 * 13 12 11 16 16 C 1.46502 * 120.00001 * 175.15106 * 15 13 12 17 17 C 1.53007 * 109.46963 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46948 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99907 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00143 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00052 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00292 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47296 * 60.00177 * 22 20 18 24 24 H 1.48506 * 109.47287 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47111 * 299.99984 * 22 20 18 26 26 C 1.46688 * 120.77530 * 64.80194 * 12 11 10 27 27 H 1.09007 * 109.47578 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47407 * 299.99900 * 1 2 3 29 29 H 1.09002 * 109.47235 * 59.99647 * 1 2 3 30 30 H 1.08003 * 120.07993 * 359.65087 * 4 3 2 31 31 H 1.08005 * 120.14028 * 179.91592 * 5 4 3 32 32 H 1.08006 * 120.09050 * 180.57390 * 8 7 6 33 33 H 1.08996 * 109.58739 * 169.11566 * 9 7 6 34 34 H 1.08996 * 109.70580 * 48.75119 * 9 7 6 35 35 H 1.08998 * 109.34477 * 327.16470 * 10 9 7 36 36 H 1.09004 * 109.20765 * 207.57202 * 10 9 7 37 37 H 1.09000 * 108.95315 * 176.11423 * 11 10 9 38 38 H 1.09003 * 108.88519 * 57.41454 * 11 10 9 39 39 H 0.97004 * 120.00181 * 355.15152 * 15 13 12 40 40 H 1.09005 * 109.46716 * 299.99463 * 16 15 13 41 41 H 1.08994 * 109.47596 * 59.99657 * 16 15 13 42 42 H 1.08998 * 109.46772 * 299.99957 * 17 16 15 43 43 H 1.09002 * 109.47040 * 59.99784 * 17 16 15 44 44 H 0.96991 * 120.00138 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.61575 * 36.13051 * 26 12 11 46 46 H 1.09000 * 109.62134 * 156.66527 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2893 2.3739 0.0005 5 6 1.9192 3.6047 0.0082 6 6 3.2981 3.6676 0.0166 7 6 4.0562 2.5162 0.0017 8 6 3.4312 1.2823 -0.0004 9 6 5.5624 2.5944 -0.0151 10 6 6.0142 3.0964 -1.3897 11 6 6.0436 4.6189 -1.4115 12 7 4.7192 5.1961 -1.2111 13 6 4.1472 5.9105 -2.2005 14 8 4.6947 5.9967 -3.2827 15 7 2.9658 6.5247 -1.9921 16 6 2.3957 7.3875 -3.0298 17 6 1.0609 7.9559 -2.5438 18 6 0.4747 8.8439 -3.6110 19 1 1.0013 8.9881 -4.5428 20 6 -0.7338 9.4723 -3.3978 21 7 -1.3749 9.2972 -2.2628 22 14 -1.4608 10.5725 -4.7208 23 1 -1.6817 9.7802 -5.9572 24 1 -2.7563 11.1243 -4.2491 25 1 -0.5227 11.6871 -5.0083 26 6 4.0048 5.0131 0.0570 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 0.2107 2.3180 -0.0047 31 1 1.3349 4.5130 0.0073 32 1 4.0202 0.3770 -0.0027 33 1 5.9817 1.6052 0.1686 34 1 5.9032 3.2849 0.7563 35 1 5.3212 2.7377 -2.1507 36 1 7.0124 2.7129 -1.6011 37 1 6.4330 4.9517 -2.3737 38 1 6.7064 4.9704 -0.6208 39 1 2.4930 6.3955 -1.1550 40 1 3.0843 8.2058 -3.2406 41 1 2.2337 6.8060 -3.9373 42 1 0.3726 7.1374 -2.3332 43 1 1.2225 8.5374 -1.6361 44 1 -2.2249 9.7396 -2.1127 45 1 4.7156 5.0299 0.8832 46 1 3.2737 5.8116 0.1837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541317474.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:40 Heat of formation + Delta-G solvation = -66.867728 kcal Electronic energy + Delta-G solvation = -26905.051572 eV Core-core repulsion = 23179.806339 eV Total energy + Delta-G solvation = -3725.245233 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.83291 -40.87709 -39.20770 -37.11049 -36.42667 -35.18097 -34.44888 -32.09495 -31.88005 -31.06193 -28.49550 -27.26041 -26.71708 -26.02842 -23.87190 -23.08703 -22.66770 -21.29577 -20.80478 -19.21626 -18.72578 -18.49156 -17.46084 -17.24577 -16.94169 -16.67274 -16.49929 -16.19751 -15.83704 -15.45457 -15.28673 -15.09503 -14.83274 -14.42345 -14.27653 -14.19237 -14.06779 -13.73281 -13.31688 -13.17610 -13.04884 -12.90198 -12.77685 -12.53345 -12.47027 -12.23363 -12.04119 -11.86066 -11.69502 -11.62786 -11.61002 -11.47286 -11.13885 -10.59465 -10.17412 -9.77988 -9.53755 -9.09422 -8.23481 -6.33681 0.32333 0.36969 1.41986 1.44326 1.52048 1.74362 2.13047 2.33711 2.41028 2.68698 3.09589 3.11276 3.71844 3.74974 3.86935 4.04316 4.04780 4.08282 4.22998 4.29661 4.34302 4.40273 4.46718 4.51129 4.55791 4.59298 4.61067 4.69801 4.80851 4.85379 4.89079 4.97286 5.07621 5.09265 5.24148 5.30894 5.36596 5.41191 5.50258 5.58662 5.62832 5.64500 5.78802 5.81696 5.94752 6.17513 6.40349 6.78459 6.97349 7.35413 7.56693 8.88193 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.003452 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.864439 B = 8110.110582 C = 9929.442754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.222 4.222 5 C -0.075 4.075 6 C -0.153 4.153 7 C -0.031 4.031 8 C -0.164 4.164 9 C -0.076 4.076 10 C -0.123 4.123 11 C 0.120 3.880 12 N -0.616 5.616 13 C 0.698 3.302 14 O -0.638 6.638 15 N -0.734 5.734 16 C 0.160 3.840 17 C 0.027 3.973 18 C -0.548 4.548 19 H 0.058 0.942 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.268 1.268 26 C 0.154 3.846 27 H 0.122 0.878 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.137 0.863 31 H 0.128 0.872 32 H 0.142 0.858 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.038 0.962 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.402 0.598 40 H 0.045 0.955 41 H 0.038 0.962 42 H 0.006 0.994 43 H 0.010 0.990 44 H 0.266 0.734 45 H 0.123 0.877 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.980 -18.166 11.409 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.240 4.240 5 C -0.094 4.094 6 C -0.155 4.155 7 C -0.031 4.031 8 C -0.182 4.182 9 C -0.113 4.113 10 C -0.161 4.161 11 C -0.002 4.002 12 N -0.351 5.351 13 C 0.399 3.601 14 O -0.520 6.520 15 N -0.390 5.390 16 C 0.036 3.964 17 C -0.011 4.011 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.788 3.212 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.193 1.193 26 C 0.032 3.968 27 H 0.140 0.860 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.155 0.845 31 H 0.146 0.854 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.116 0.884 39 H 0.240 0.760 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.028 0.972 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.318 -18.219 10.731 23.983 hybrid contribution -1.565 0.661 -0.442 1.755 sum 9.753 -17.557 10.290 22.567 Atomic orbital electron populations 1.23303 0.76740 1.05514 1.01933 1.86022 1.23172 1.26847 1.88694 1.19248 0.92861 0.84385 0.96286 1.21417 1.00822 0.92291 1.09518 1.21008 0.94236 0.97703 0.96463 1.20249 0.93438 0.96055 1.05722 1.19799 0.97166 0.91015 0.95130 1.20581 0.91241 0.98744 1.07657 1.20791 0.88691 1.04052 0.97730 1.21767 1.02861 0.94732 0.96785 1.21303 0.81813 0.93613 1.03509 1.47031 1.19722 1.54461 1.13933 1.16183 0.81128 0.78851 0.83936 1.90833 1.66258 1.69137 1.25778 1.45395 1.21508 1.50932 1.21157 1.21078 0.94824 0.91273 0.89274 1.19099 0.90598 0.95058 0.96318 1.21419 1.05827 1.28928 1.02443 0.92409 1.25828 0.97169 0.97967 0.97907 1.70045 1.16271 1.44522 1.25587 0.85526 0.77640 0.78981 0.79071 1.19511 1.20480 1.19302 1.20862 0.96560 0.93143 0.86227 0.86005 0.91743 0.92684 0.84491 0.85405 0.84011 0.88648 0.88286 0.94277 0.87561 0.91226 0.88389 0.76044 0.93672 0.94342 0.97532 0.97160 0.92536 0.85949 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.36 10.49 -92.40 -0.97 -8.33 16 3 C 0.12 2.80 6.68 22.51 0.15 2.95 16 4 C -0.22 -5.31 9.04 22.40 0.20 -5.11 16 5 C -0.08 -1.86 9.71 22.23 0.22 -1.64 16 6 C -0.15 -3.45 5.47 -19.57 -0.11 -3.56 16 7 C -0.03 -0.62 4.98 -19.89 -0.10 -0.72 16 8 C -0.16 -3.54 9.62 22.40 0.22 -3.33 16 9 C -0.08 -1.04 5.41 29.94 0.16 -0.88 16 10 C -0.12 -2.10 5.85 30.41 0.18 -1.92 16 11 C 0.12 2.54 5.84 86.27 0.50 3.04 16 12 N -0.62 -16.32 2.65 -844.20 -2.24 -18.56 16 13 C 0.70 25.81 8.25 179.06 1.48 27.29 16 14 O -0.64 -28.84 15.64 -3.99 -0.06 -28.90 16 15 N -0.73 -27.51 5.43 -478.52 -2.60 -30.11 16 16 C 0.16 7.22 5.62 86.38 0.49 7.71 16 17 C 0.03 1.37 5.09 29.85 0.15 1.53 16 18 C -0.55 -30.94 9.11 25.60 0.23 -30.71 16 19 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 20 C 0.01 0.58 5.46 84.65 0.46 1.04 16 21 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 22 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.15 3.17 5.36 86.03 0.46 3.63 16 27 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 29 H 0.05 0.84 7.65 -2.39 -0.02 0.83 16 30 H 0.14 2.88 6.29 -2.91 -0.02 2.86 16 31 H 0.13 3.07 8.00 -2.91 -0.02 3.05 16 32 H 0.14 2.56 7.98 -2.91 -0.02 2.54 16 33 H 0.09 0.97 7.92 -2.39 -0.02 0.95 16 34 H 0.10 1.01 6.93 -2.39 -0.02 0.99 16 35 H 0.04 0.92 7.84 -2.39 -0.02 0.90 16 36 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.07 1.86 6.85 -2.39 -0.02 1.84 16 38 H 0.10 1.42 8.07 -2.39 -0.02 1.40 16 39 H 0.40 13.16 6.02 -92.71 -0.56 12.61 16 40 H 0.04 2.10 8.14 -2.38 -0.02 2.08 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.27 14.62 8.31 -92.72 -0.77 13.85 16 45 H 0.12 1.70 7.32 -2.39 -0.02 1.68 16 46 H 0.08 1.77 5.73 -2.39 -0.01 1.76 16 Total: -1.00 -73.33 368.81 2.68 -70.64 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.43 Total: 22.52 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.81 Total: 0.71 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.55 Total: -102.43 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.03 Total: -37.23 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.33 2.68 -70.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541317474.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.775 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds